BAC Information

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BAC

Clone NameB6Ng01-310J10
Chromosome18 (Build37)4 (Build37)
Map Location 23,953,381 - 23,953,89835,343,781 - 35,344,770
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNol4, LOC100040579, LOC665797, Dtna
Downstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J10.bB6Ng01-310J10.g
ACCGA102525GA102526
length1,0661,006
definitionB6Ng01-310J10.b B6Ng01-310J10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,953,381 - 23,953,898)(35,343,781 - 35,344,770)
sequence
gaattctcaagtatgtcaggtatcatggagaccaacagcctattcagact
acgtcaccaactgtttgcaaagtggttctgcaaccatatctgtaccatga
tgcagcagcattcttgaagtcttggaacttcctgggaacttactgtaaaa
tggtggggtccctcaagttacatactggtgaaagatcatcctctgtgtcc
ccctgcttcttaagcatgcatttaaaaacataatcaaagcttagttggca
aagctttctgtttggaggtgaaacatttgggttcaaatctaaactctgtc
attagtcagagatctgaacttgggtaactcatttaacatctctaggtctc
aacaaacaacttagaaaggtaactgtaagaatcaaatgtgattttttttt
taaactcaaactgttgaagaatctcccaacattgctattgaactgcaaat
ataaatgctaatgtctctactatcatgtgacctgtaataccagatagaag
aagcttcgaagtgtgtgatcaaaggagatcaaggccggccaccttcctgg
tgagagcacgggggtctgcccggcctgagaggtttgtggcacaggcgccg
gcgggagcctagggcaggctgcacgggtgaccgtgtggaatacagagtgc
cagccgtttctgggacgggcgagagtcgcagagcttctgggcggcgccat
cttcagctccagacagccggccaccttcctggtgagagcacgggggtctg
ccaggcctgagaggtttgtggcacaggcgccggcgggagccttcttggct
ccgggactccgcggagggcaggctgcacgggtgaccgtgtggaatacaga
gtgccagccgtttctgggacgggcgagagtcacagagcttctgggcagcg
ccatcttcagctccagacagccggcaccttcctggtgagagcacgggggt
ctgcccgggctgagaggtttgtggcacaggcgccggcggagccttcttgg
ctccgggactccgcggagggcaggctgcacggtgacgtgtggaatacaga
gtgcagcgttctggga
gaattccacccaactctaacttggtgaaccttcgagtttcttagggttat
ttacaggacactaggtgatctaaaggcagctacattacggaaagccctcc
tgagtgtgggtgacaagtgaaatgaactgtacttctagaaatccctactc
tacttacaggcagcttggttggttagagtctccctccctaagcaattgct
tactgtttttgtcacttgggggaggaactttctgaaccttgaaaggtttg
tttgttttgttttgttttgtttgttttgcttttttttcaagacaggtttt
ctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggc
cttgaactcagaaatccacctgcctctgcctcccaagtgctggaattaaa
ggtgtgcgccaccacctcccggagccttgaaagtttcgtttacttccaga
gtcttcagagttcctctcctgcctcccagaaggaatgctttaatttgaag
gaaatagctacacaaaactctacatttcctctgactcttatattctttcc
gtcccttcttccattatatccccagagccttggagacggtgatcactgat
gtctgatggcttttatccatctgaggctgaacactgggccacgacgccgg
agcaacagccactattctaaaagcttaaccagttctatgtttctatttac
ccactgcagaagaaagcttctctccatgagcgaacaaggctgacaacacc
attaatttatgggtttaaacataaatctttagaagggaatttgacagaca
catcatatccatttgaaagagcaacagaagttgcttcctcactggaacct
atgacatctacggccacaggcttttgccttggcttacagtattagatgtg
agttctttcctggtttgtatccagcacagtcatatcatgaattcagccct
ttggtaaatcgtgtctgggatgtggtggtgtagcacacaggaatcataca
tagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23953381_23953898
seq2: B6Ng01-310J10.b_629_1114 (reverse)

seq1  TCCCAGAAACAGCTGGCACTCTGTATTCCACACAGTCACCCGTGCAGCCT  50
      ||||||||   ||| |||||||||||||||||| |||| |||||||||||
seq2  TCCCAGAA--CGCT-GCACTCTGTATTCCACAC-GTCA-CCGTGCAGCCT  45

seq1  GCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCTCCGGCGCCTGTGCC  100
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCT-CCGCCGGCGCCTGTGCC  94

seq1  ACAAACCTCTCAGGCCAGGCAGA-CCCCGTGCTCTCACCAGGAAGGTGGC  149
      ||||||||||||| || |||||| ||||||||||||||||||||||| ||
seq2  ACAAACCTCTCAGCCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGT-GC  143

seq1  CGGCTGTCTGGAGCTAAAGATGGCGCCGCCCAGAAGCTCTGCGACTCTCT  199
      ||||||||||||||| |||||||||| |||||||||||||| ||  ||||
seq2  CGGCTGTCTGGAGCTGAAGATGGCGCTGCCCAGAAGCTCTGTGA--CTCT  191

seq1  CGCCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACGGTCACCCGTG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACGGTCACCCGTG  241

seq1  CAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCC  291

seq1  TGTGCCACAAACCTCTCAGGCCAGGCAGACCCCCGTGCTCTCACCAGGAA  349
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGCCACAAACCTCTCAGGCCTGGCAGACCCCCGTGCTCTCACCAGGAA  341

seq1  GGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCAGAAGCTCTGCGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCAGAAGCTCTGCGA  391

seq1  CTCTCTCGCCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACAGTCA  449
        |||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  --CTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCACACGGTCA  439

seq1  CCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCCCTCC  499
      |||||||||||||||||                      |||||||| ||
seq2  CCCGTGCAGCCTGCCCT----------------------AGGCTCCCGCC  467

seq1  GGCGCCTGTGCCACAAACC  518
      |||||||||||||||||||
seq2  GGCGCCTGTGCCACAAACC  486

seq1: chr4_35343781_35344770
seq2: B6Ng01-310J10.g_66_1056

seq1  GAATTCCACCCAACTCTAACTTGGTGAACCTTCGAGTTTCTTAGGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCAACTCTAACTTGGTGAACCTTCGAGTTTCTTAGGGTTAT  50

seq1  TTACAGGACACTAGGTGATCTAAAGGCAGCTACATTACGGAAAGCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGACACTAGGTGATCTAAAGGCAGCTACATTACGGAAAGCCCTCC  100

seq1  TGAGTGTGGGTGACAAGTGAAATGAACTGTACTTCTAGAAATCCCTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGGTGACAAGTGAAATGAACTGTACTTCTAGAAATCCCTACTC  150

seq1  TACTTACAGGCAGCTTGGTTGGTTAGAGTCTCCCTCCCTAAGCAATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGCAGCTTGGTTGGTTAGAGTCTCCCTCCCTAAGCAATTGCT  200

seq1  TACTGTTTTTGTCACTTGGGGGAGGAACTTTCTGAACCTTGAAAGGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTTGTCACTTGGGGGAGGAACTTTCTGAACCTTGAAAGGTTTG  250

seq1  TTTGTTTTGTTTTGTTTTGTTTGTTTTGCTTTTTTTTCAAGACAGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTGTTTTGCTTTTTTTTCAAGACAGGTTTT  300

seq1  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  350

seq1  CTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAA  400

seq1  GGTGTGCGCCACCACCTCCCGGAGCCTTGAAAGTTTCGTTTACTTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCGCCACCACCTCCCGGAGCCTTGAAAGTTTCGTTTACTTCCAGA  450

seq1  GTCTTCAGAGTTCCTCTCCTGCCTCCCAGAAGGAATGCTTTAATTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGAGTTCCTCTCCTGCCTCCCAGAAGGAATGCTTTAATTTGAAG  500

seq1  GAAATAGCTACACAAAACTCTACATTTCCTCTGACTCTTATATTCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCTACACAAAACTCTACATTTCCTCTGACTCTTATATTCTTTCC  550

seq1  GTCCCTTCTTCCATTATATCCCCAGAGCCTTGGAGACGGTGATCACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCTTCCATTATATCCCCAGAGCCTTGGAGACGGTGATCACTGAT  600

seq1  GTCTGATGGCTTTTATCCATCTGAGGCTGAACACTGGGCCACGACGCCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGGCTTTTATCCATCTGAGGCTGAACACTGGGCCACGACGCCGG  650

seq1  AGCAACAGCCACTATTCTAAAAGCTTAACCAGTTCTATGTTTCTATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGCCACTATTCTAAAAGCTTAACCAGTTCTATGTTTCTATTTAC  700

seq1  CCACTGCAGAAGAAAGCTTCTCTCCATGAGCGAACAAGGCTGACAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGAAGAAAGCTTCTCTCCATGAGCGAACAAGGCTGACAACACC  750

seq1  ATTAATTTATGGGTTTAAACATAAATCTTTAGAAGGGAATTTGACAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTATGGGTTTAAACATAAATCTTTAGAAGGGAATTTGACAGACA  800

seq1  CATCATATCCATTTGAAAGAGCAACAGAAGTTGCTTCCTCACTGGAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATCCATTTGAAAGAGCAACAGAAGTTGCTTCCTCACTGGAACCT  850

seq1  ATGACATCTACGGCCACAGGCTTTTGCCTTGGCTTACAGTATTAGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCTACGGCCACAGGCTTTTGCCTTGGCTTACAGTATTAGATGTG  900

seq1  AGTTCTTTCCTGG-TTGTATCCAGCACAGTCATATCATGAATTCAG-CCT  948
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  AGTTCTTTCCTGGTTTGTATCCAGCACAGTCATATCATGAATTCAGCCCT  950

seq1  TTGGTAAATCGTGTCTGGGATGTTGGTGGTGTAGCACACAGG  990
      |||||||||||||||||||||| |||||||||||||||||||
seq2  TTGGTAAATCGTGTCTGGGATG-TGGTGGTGTAGCACACAGG  991