BAC Information

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BAC

Clone NameB6Ng01-311J13
Chromosome4 (Build37)
Map Location 83,913,324 - 84,040,352
singlet/doubletdoublet
Overlap geneBnc2
Upstream gene1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311J13.bB6Ng01-311J13.g
ACCGA103276GA103277
length1,1791,032
definitionB6Ng01-311J13.b B6Ng01-311J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,039,180 - 84,040,352)(83,913,324 - 83,914,339)
sequence
gaattcaggagtcagagacaggcagatctcagagctggagaccagcttgg
cctaacacagaaggttccaaggcggctagggctacttaaacgctgtctct
gagcaaactctttgatgactccctacagactggaactgtaaaacagactt
ccctggtagagtgtagagcctataccaggccagtcattaacataggatga
ttaccatctatcttcgatgttgcattcaggctgaaatcatggcctcaagc
cacgctgtttacgttccacatcctcacctatggctcatctctgacactct
tgagagtcttttctttgtggcctacttggactttgttgttactactaact
tactcgcacttactagtacaaacatcctctgcactagggtctgaagctgg
ccctatgcgtatctgtgtaaataaagttttactggggcacacacacacac
acacacccttccatactctaatgtataagtgactaattgttaaataaaag
ttgcagcttacaaactagttactaaatatcacgtccttgtagaatacatt
gtcgagccctgttgtacatatgctttgtcacactgttcttacttctttat
atatgacacgtttgtatagaatgatcatagactattgagatagttacgtc
ggtaaacgtgcttgccgccagtcctgataatgaacttagaccagtcttca
gggccttcctggtagaagaaaactcctattagccatattctgaccactcc
atgagcatggtgggtagatgtgcatactcacaaaaaaataaatgttaaaa
aaaaaaaaactaattaaataagcatcagggaaacggtccttgtatctcct
gtctgggtataaaaggagtttagagggaaatatttgaattagatatttac
tcaagcttttccggttaccccccgtccccctccccaccttttgctcactc
aaggttcttttcttctttgaaaccaccagacttcttagcttctcatgcct
cgggaagatgggatagcactttcctgtcgctaccgagcacatctgaccat
gagtctgcatttcactttgcagggcatgcagactgccaaaccccatgcat
catcaggatcgggtgtctactgattctctgtgaatcccttcagctgctca
ttgtgtgggtccagacgccttgtttggtg

gaattccatattctctcagccaagtgaggaacctcaccacaacccacaga
cccaagtcctgcctggtttctctatcttccttgtcccactgacccacagt
gaactcatccacagctcttgagactggcactggtgggatgagggaagttt
cctcttgagacaggagaaccaaagtttgcacaggaaagtgagtgtactgt
atacaaggaatcctagtcctatcttgttaatacatactactagaacatct
catttgcttaattcgtgttatgtaaacctgggcagggtagaacacacaca
catatccaaagtgatcaaaaccaggccaagggagggagtgttctacccac
ttgccctaggaaagatttatttgtttttttggaggggagtgggtaacagg
agggcaaagggcaagagtgagggtaggagagatgcagaggagatcaagac
aggcaatgagaagaatgaaggactctgtacaaagacatgcaaaaatgctc
caagcagagtatgaatttaaaagaataaacagtcagtcttggtttataca
tctcaagtgaacctatttactcagcacattggccaggcagacaggagcat
cgtgtcttgtgaatcagggcttacatgagccactgcgctgattcaggaat
gggtagggggatgctttgtctcctagcaaagaagaggcaggaacgttagt
gccacaaagacagtgccaggtcagttcaccatgcagggtgtgtgggagag
cagcacaagggctggagttttcacctttcttgaaaaccttccagagccag
cagagggagagctctctttcccacacaggggtcttccccagagcatcctc
ttccaccccctgggattcccacaacagaagttgggcagagccgttaataa
attgatgcctttgccatccttagaaggtgtcctttagtcagcaatcacca
ttttggcaacaggaagccttataaatcttggtatagcacttaagatctcc
tctatcttggaagaaaataatacttttatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84039180_84040352
seq2: B6Ng01-311J13.b_44_1222 (reverse)

seq1  CACCAAACAAGCGCTCTGACCACAACAAATGAGCAGCTGAAAGGA-TCAC  49
      |||||||||||   ||||  | ||   |||||||||||||| ||| ||||
seq2  CACCAAACAAGGCGTCTGGACCCACACAATGAGCAGCTGAAGGGATTCAC  50

seq1  AGAGAAACAGTAGGACACCGAATCCTGGATTGGATGCATGGGGTTTGGCA  99
      |||||| ||||| ||||||  ||||| |||  ||||||||||||||||||
seq2  AGAGAATCAGTA-GACACCCGATCCT-GAT--GATGCATGGGGTTTGGCA  96

seq1  GTCTGCATG-CCTGCAAAGTG-AATGCAGACTCATGGTCAGATGTGCTCG  147
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  GTCTGCATGCCCTGCAAAGTGAAATGCAGACTCATGGTCAGATGTGCTCG  146

seq1  GTAGCCGACAGG-AAGTGCTATCCCATCTT-CCGAGGCATTGAGAAGCTA  195
      |||| ||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  GTAG-CGACAGGAAAGTGCTATCCCATCTTCCCGAGGCA-TGAGAAGCTA  194

seq1  AG-AGTCTGGTGGTTTCAAAGA--GAAAGAACC-TGAGTGAGCAAAAGGT  241
      || |||||||||||||||||||   |||||||| ||||||||||||||||
seq2  AGAAGTCTGGTGGTTTCAAAGAAGAAAAGAACCTTGAGTGAGCAAAAGGT  244

seq1  GGG--AGGGGACGGGGGGTAACCGGAAAAGCCTGAGTAAAATATCTAATT  289
      |||   ||||||||||||||||||||||||| ||||| ||||||||||||
seq2  GGGGAGGGGGACGGGGGGTAACCGGAAAAGCTTGAGT-AAATATCTAATT  293

seq1  CAAAATATTTCCCTCTAAACTCCTTTTATACCCAGACAGGAGATACAAGG  339
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAATATTTCCCTCTAAACTCCTTTTATACCCAGACAGGAGATACAAGG  342

seq1  A-CGTTT-CCTGATGCTTATTTAATTAGTTTTTTTTTTTTTAACATTTAT  387
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTTCCCTGATGCTTATTTAATTAGTTTTTTTTTTTTTAACATTTAT  392

seq1  TTTTTTGTGAGTATGCACATCTA-CCACCATGCTCATGGAGTGGTCAGAA  436
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTTGTGAGTATGCACATCTACCCACCATGCTCATGGAGTGGTCAGAA  442

seq1  TATGGCTAATAGGAGTTTTCTTCTACCAGGAAGGCCCTGAAGACTGGTCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTAATAGGAGTTTTCTTCTACCAGGAAGGCCCTGAAGACTGGTCT  492

seq1  AAGTTCATTATCAGGACTGGCGGCAAGCACGTTTACCGACGTAACTATCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATTATCAGGACTGGCGGCAAGCACGTTTACCGACGTAACTATCT  542

seq1  CAATAGTCTATGATCATTCTATACAAACGTGTCATATATAAAGAAGTAAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTCTATGATCATTCTATACAAACGTGTCATATATAAAGAAGTAAG  592

seq1  AACAGTGTGACAAAGCATATGTACAACAGGGCTCGACAATGTATTCTACA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGACAAAGCATATGTACAACAGGGCTCGACAATGTATTCTACA  642

seq1  AGGACGTGATATTTAGTAACTAGTTTGTAAGCTGCAACTTTTATTTAACA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGTGATATTTAGTAACTAGTTTGTAAGCTGCAACTTTTATTTAACA  692

seq1  ATTAGTCACTTATACATTAGAGTATGGAAGGGTGTGTGTGTGTGTGTGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCACTTATACATTAGAGTATGGAAGGGTGTGTGTGTGTGTGTGTG  742

seq1  CCCCAGTAAAACTTTATTTACACAGATACGCATAGGGCCAGCTTCAGACC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTAAAACTTTATTTACACAGATACGCATAGGGCCAGCTTCAGACC  792

seq1  CTAGTGCAGAGGATGTTTGTACTAGTAAGTGCGAGTAAGTTAGTAGTAAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCAGAGGATGTTTGTACTAGTAAGTGCGAGTAAGTTAGTAGTAAC  842

seq1  AACAAAGTCCAAGTAGGCCACAAAGAAAAGACTCTCAAGAGTGTCAGAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGTCCAAGTAGGCCACAAAGAAAAGACTCTCAAGAGTGTCAGAGA  892

seq1  TGAGCCATAGGTGAGGATGTGGAACGTAAACAGCGTGGCTTGAGGCCATG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATAGGTGAGGATGTGGAACGTAAACAGCGTGGCTTGAGGCCATG  942

seq1  ATTTCAGCCTGAATGCAACATCGAAGATAGATGGTAATCATCCTATGTTA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCTGAATGCAACATCGAAGATAGATGGTAATCATCCTATGTTA  992

seq1  ATGACTGGCCTGGTATAGGCTCTACACTCTACCAGGGAAGTCTGTTTTAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGGCCTGGTATAGGCTCTACACTCTACCAGGGAAGTCTGTTTTAC  1042

seq1  AGTTCCAGTCTGTAGGGAGTCATCAAAGAGTTTGCTCAGAGACAGCGTTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTCTGTAGGGAGTCATCAAAGAGTTTGCTCAGAGACAGCGTTT  1092

seq1  AAGTAGCCCTAGCCGCCTTGGAACCTTCTGTGTTAGGCCAAGCTGGTCTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCCTAGCCGCCTTGGAACCTTCTGTGTTAGGCCAAGCTGGTCTC  1142

seq1  CAGCTCTGAGATCTGCCTGTCTCTGACTCCTGAATTC  1173
      |||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAGATCTGCCTGTCTCTGACTCCTGAATTC  1179


seq1: chr4_83913324_83914339
seq2: B6Ng01-311J13.g_66_1097

seq1  GAATTCCATATTCTCTCAGCCAAGTGAGGAACCTCACCACAACCCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTCTCTCAGCCAAGTGAGGAACCTCACCACAACCCACAGA  50

seq1  CCCAAGTCCTGCCTGGTTTCTCTATCTTCCTTGTCCCACTGACCCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCCTGCCTGGTTTCTCTATCTTCCTTGTCCCACTGACCCACAGT  100

seq1  GAACTCATCCACAGCTCTTGAGACTGGCACTGGTGGGATGAGGGAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATCCACAGCTCTTGAGACTGGCACTGGTGGGATGAGGGAAGTTT  150

seq1  CCTCTTGAGACAGGAGAACCAAAGTTTGCACAGGAAAGTGAGTGTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGACAGGAGAACCAAAGTTTGCACAGGAAAGTGAGTGTACTGT  200

seq1  ATACAAGGAATCCTAGTCCTATCTTGTTAATACATACTACTAGAACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGAATCCTAGTCCTATCTTGTTAATACATACTACTAGAACATCT  250

seq1  CATTTGCTTAATTCGTGTTATGTAAACCTGGGCAGGGTAGAACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTTAATTCGTGTTATGTAAACCTGGGCAGGGTAGAACACACACA  300

seq1  CATATCCAAAGTGATCAAAACCAGGCCAAGGGAGGGAGTGTTCTACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCAAAGTGATCAAAACCAGGCCAAGGGAGGGAGTGTTCTACCCAC  350

seq1  TTGCCCTAGGAAAGATTTATTTGTTTTTTTGGAGGGGAGTGGGTAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTAGGAAAGATTTATTTGTTTTTTTGGAGGGGAGTGGGTAACAGG  400

seq1  AGGGCAAAGGGCAAGAGTGAGGGTAGGAGAGATGCAGAGGAGATCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAAGGGCAAGAGTGAGGGTAGGAGAGATGCAGAGGAGATCAAGAC  450

seq1  AGGCAATGAGAAGAATGAAGGACTCTGTACAAAGACATGCAAAAATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGAGAAGAATGAAGGACTCTGTACAAAGACATGCAAAAATGCTC  500

seq1  CAAGCAGAGTATGAATTTAAAAGAATAAACAGTCAGTCTTGGTTTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGTATGAATTTAAAAGAATAAACAGTCAGTCTTGGTTTATACA  550

seq1  TCTCAAGTGAACCTATTTACTCAGCACATTGGCCAGGCAGACAGGAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGAACCTATTTACTCAGCACATTGGCCAGGCAGACAGGAGCAT  600

seq1  CGTGTCTTGTGAATCAGGGCTTACATGAGCCACTGCGCTGATTCAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTTGTGAATCAGGGCTTACATGAGCCACTGCGCTGATTCAGGAAT  650

seq1  GGGTAGGGGGATGCTTTGTCTCCTAGCAAAGAAGAGGCAGGAACGTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGGGATGCTTTGTCTCCTAGCAAAGAAGAGGCAGGAACGTTAGT  700

seq1  GCCACAAAGACAGTGCCAGGTCAGTTCACCATGCAGGGTGTGTGGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAAGACAGTGCCAGGTCAGTTCACCATGCAGGGTGTGTGGGAGAG  750

seq1  CAGCACAAGGGCTGGAGTTTTCACC-TTCTTGAAAACCTTTCCAGAGCCA  799
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CAGCACAAGGGCTGGAGTTTTCACCTTTCTTGAAAACC-TTCCAGAGCCA  799

seq1  GCAGA-GGAGAGCTCTCTTTCCCACACAGGGGTC-TCCCCAGAGCATCCT  847
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGAGGGAGAGCTCTCTTTCCCACACAGGGGTCTTCCCCAGAGCATCCT  849

seq1  C-TCCACCCC--TGGATT-CCACAACAGAAG-TGGGCAGAGCCGGTTAAT  892
      | ||||||||   ||||| |||||||||||| ||||||||||| ||||||
seq2  CTTCCACCCCCTGGGATTCCCACAACAGAAGTTGGGCAGAGCC-GTTAAT  898

seq1  -AATTGATGCCTTTGCCAT-CTTAG-AGGTGT-CTTTAGTCAGC-ATCAC  937
       |||||||||||||||||| ||||| |||||| ||||||||||| |||||
seq2  AAATTGATGCCTTTGCCATCCTTAGAAGGTGTCCTTTAGTCAGCAATCAC  948

seq1  --ATTTGGCAACAGGAAGCCTTATAAAATCTTGGTATAGCACTT-AGATT  984
         ||||||||||||||||||||| ||||||||||||||||||| |||| 
seq2  CATTTTGGCAACAGGAAGCCTTAT-AAATCTTGGTATAGCACTTAAGATC  997

seq1  CTCTCTATCTT-GAAGAAA--TATACTTTTATACT  1016
        ||||||||| |||||||   |||||||||||||
seq2  TCCTCTATCTTGGAAGAAAATAATACTTTTATACT  1032


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