BAC Information

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BAC

Clone NameB6Ng01-311K11
Chromosome4 (Build37)
Map Location 134,014,296 - 134,156,381
singlet/doubletdoublet
Overlap geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311K11.bB6Ng01-311K11.g
ACCGA103318GA103319
length1,0441,095
definitionB6Ng01-311K11.b B6Ng01-311K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,155,344 - 134,156,381)(134,014,296 - 134,015,396)
sequence
gaattcaatggttatttgatgagaccgtcagatcagacaggtcaggaatt
ctcagaaggcacagcatggatggctcttctttgcaccttgtgcgcaggcg
ctcagctgcgtaggttggaggcggaggcttttcattcatgtgtctggaat
ccatgccagttgttggccagacctctggtgggactgtcagtcgggataaa
tgtacatggagtcctagtggctgtcttgggctccccgacaatatggcatc
tgtccctcacagaggcaggagagctgccaatttcttaaggctggcctaga
aaccaacatatcctcacattctttattctgtgggtccgagtcattacctg
tcctgcccaggtgttggggtaaagccaagcaaggagcgtccacaccccag
gaagcctcactgtcacgggcaagcactgcctttggtccccatctgtaaaa
attccagtctgccacacacagccaccctgctctctgtggcagccgagaaa
agatgtccgtgttgtttcactgcagatcaagagaagtctctgcggattgt
atcattaaattaaacacagccattagtgcgtggctccggggagacgcagt
aataggcgaggccttgggtcattttttttccttctaaatgttcttccggg
agctggagttgcccagcctgacccatttctctctgttaatataacatcac
ataaaagacatcattattatacggcagagctggtggggacacagaccagg
caagtagctctgtgaaggtggccctggccctgagaggaggtgctggggcc
agaagttctcactcctctcaacaggcagctctgtgtgaggtgcggtgagg
cccgtggaggccagaggatgaatggtcttgagtgttgatcctctttggtg
ttgtccagcttgggttttgagacctagtctgtccttgggctctggggttc
attgattaggttagactgactctgcactgagtcccggggcagctcctgtt
ctgtcattattccaccaagaatggctgtggttggggttaaggga
gaattcactatgtacatagcccaggctttcccttgatttgcagcaatcca
agcctggggcttcccgaatgtggaggttacaggcacagccaccaccagtt
catactgctcacctcttgtttgtattttgctcattcggagaagactggct
ggaggaagcggtggaaagcaatcacccagctacttcgttacagaaatggc
cccagttgaggcgacaagactctccatgcaaggtggtgtcctgagttaga
tcttggaacagaaaaaaaaagagagagagagaccccaacaggaagatgga
ggagccagctcaagccagccgttcagttaacagcgctgcgctaaggcaga
tgtcctagtttggatatgtgtcatttattattctgtgtgaccctgatatc
aaccgttgttgtacagaagaagtttcatgagctcttcacagatgacgaga
tggggcagtcgcacctgagattcgcacaaccatgatgagcaggaccagca
ggattgtgtgaggagacacaggatgagaagtccctctgggacaccttggg
agcctgggcaaatgtctccagttctctgaccacgcctctcatctgtaagg
gataggagtagccattcggacagcacagagtggcaaagccagactagact
gaagctctgctgctcccaaatggcctagttgggccagtgacgtcatctca
gcccatccgatgccaagatagggcagagctagatgagaaaaggctccaca
ccatatgttctaggatctcagtcacagatcaaggcagtaaactagttctt
aaaattgcatgttctgccctctcatgtctacacagcctagagagacagag
tttgagttgagggaaaaaatttcgtttaaaaaaaaattgaagtggggtgg
gtggtagtgcacaacctttgattcctagcacccaggaaaacagaggcaag
gtggatctctagttcaggccagcgaggtggagttctacgacaggccaggg
ctacattaaagaaccttgtctctaaacaaaacaaaacaaaatccccgaac
aactccgttacaaccccaaggaaaaaaaccacaaagaatggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134155344_134156381
seq2: B6Ng01-311K11.b_47_1090 (reverse)

seq1  TCCCT--ACCCCACCCACAGACATTCTT-GTGGAATAATGACAG-ACAGG  46
      |||||  |||||| |||||| ||||||| ||||||||||||||| |||||
seq2  TCCCTTAACCCCAACCACAGCCATTCTTGGTGGAATAATGACAGAACAGG  50

seq1  AGGCTG-CCCGGGACTCAGTGCAGAGTCAGTCTAACCTAATCAATGAACC  95
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  A-GCTGCCCCGGGACTCAGTGCAGAGTCAGTCTAACCTAATCAATGAACC  99

seq1  CC--AGGCCAAGGACAGACTAGGTCTCAAAACCCAAGCTGGACAACACCA  143
      ||  || |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCCAAGGACAGACTAGGTCTCAAAACCCAAGCTGGACAACACCA  149

seq1  AAGAGGATCAACACTCAAGACCATTCATCCTCTGGCCTCCACGGGCCTCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATCAACACTCAAGACCATTCATCCTCTGGCCTCCACGGGCCTCA  199

seq1  CCGCACCTCACACAGAGCTGCCTGTTGAGAGGAGTGAGAACTTCTGGCCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCTCACACAGAGCTGCCTGTTGAGAGGAGTGAGAACTTCTGGCCC  249

seq1  CAGCACCTCCTCTCAGGGCCAGGGCCACCTTCACAGAGCTACTTGCCTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTCCTCTCAGGGCCAGGGCCACCTTCACAGAGCTACTTGCCTGG  299

seq1  TCTGTGTCCCCACCAGCTCTGCCGTATAATAATGATGTCTTTTATGTGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCCCACCAGCTCTGCCGTATAATAATGATGTCTTTTATGTGAT  349

seq1  GTTATATTAACAGAGAGAAATGGGTCAGGCTGGGCAACTCCAGCTCCCGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTAACAGAGAGAAATGGGTCAGGCTGGGCAACTCCAGCTCCCGG  399

seq1  AAGAACATTTAGAAGGAAAAAAAATGACCCAAGGCCTCGCCTATTACTGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTTAGAAGGAAAAAAAATGACCCAAGGCCTCGCCTATTACTGC  449

seq1  GTCTCCCCGGAGCCACGCACTAATGGCTGTGTTTAATTTAATGATACAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCGGAGCCACGCACTAATGGCTGTGTTTAATTTAATGATACAAT  499

seq1  CCGCAGAGACTTCTCTTGATCTGCAGTGAAACAACACGGACATCTTTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGAGACTTCTCTTGATCTGCAGTGAAACAACACGGACATCTTTTCT  549

seq1  CGGCTGCCACAGAGAGCAGGGTGGCTGTGTGTGGCAGACTGGAATTTTTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCCACAGAGAGCAGGGTGGCTGTGTGTGGCAGACTGGAATTTTTA  599

seq1  CAGATGGGGACCAAAGGCAGTGCTTGCCCGTGACAGTGAGGCTTCCTGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGGACCAAAGGCAGTGCTTGCCCGTGACAGTGAGGCTTCCTGGG  649

seq1  GTGTGGACGCTCCTTGCTTGGCTTTACCCCAACACCTGGGCAGGACAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGACGCTCCTTGCTTGGCTTTACCCCAACACCTGGGCAGGACAGGT  699

seq1  AATGACTCGGACCCACAGAATAAAGAATGTGAGGATATGTTGGTTTCTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCGGACCCACAGAATAAAGAATGTGAGGATATGTTGGTTTCTAG  749

seq1  GCCAGCCTTAAGAAATTGGCAGCTCTCCTGCCTCTGTGAGGGACAGATGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTTAAGAAATTGGCAGCTCTCCTGCCTCTGTGAGGGACAGATGC  799

seq1  CATATTGTCGGGGAGCCCAAGACAGCCACTAGGACTCCATGTACATTTAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTCGGGGAGCCCAAGACAGCCACTAGGACTCCATGTACATTTAT  849

seq1  CCCGACTGACAGTCCCACCAGAGGTCTGGCCAACAACTGGCATGGATTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTGACAGTCCCACCAGAGGTCTGGCCAACAACTGGCATGGATTCC  899

seq1  AGACACATGAATGAAAAGCCTCCGCCTCCAACCTACGCAGCTGAGCGCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGAATGAAAAGCCTCCGCCTCCAACCTACGCAGCTGAGCGCCT  949

seq1  GCGCACAAGGTGCAAAGAAGAGCCATCCATGCTGTGCCTTCTGAGAATTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAAGGTGCAAAGAAGAGCCATCCATGCTGTGCCTTCTGAGAATTC  999

seq1  CTGACCTGTCTGATCTGACGGTCTCATCAAATAACCATTGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGTCTGATCTGACGGTCTCATCAAATAACCATTGAATTC  1044

seq1: chr4_134014296_134015396
seq2: B6Ng01-311K11.g_67_1161

seq1  GAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAATCCA  50

seq1  AGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACCAGTT  100

seq1  CATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACTGGCT  150

seq1  GGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAATGGC  200

seq1  CCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAGTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAGTTAGA  250

seq1  TCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAGATGGA  300

seq1  GGAGCCAGCTCAAGCCAGCCGTTCAGTTAACAGCGCTGCGCTAAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCTCAAGCCAGCCGTTCAGTTAACAGCGCTGCGCTAAGGCAGA  350

seq1  TGTCCTAGTTTGGATATGTGTCATTTATTATTCTGTGTGACCCTGATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGTTTGGATATGTGTCATTTATTATTCTGTGTGACCCTGATATC  400

seq1  AACCGTTGTTGTACAGAAGAAGTTTCATGAGCTCTTCACAGATGACGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTGTTGTACAGAAGAAGTTTCATGAGCTCTTCACAGATGACGAGA  450

seq1  TGGGGCAGTCGCACCTGAGATTCGCACAACCATGATGAGCAGGACCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGTCGCACCTGAGATTCGCACAACCATGATGAGCAGGACCAGCA  500

seq1  GGATTGTGTGAGGAGACACAGGATGAGAAGTCCCTCTGGGACACCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGTGAGGAGACACAGGATGAGAAGTCCCTCTGGGACACCTTGGG  550

seq1  AGCCTGGGCAAATGTCTCCAGTTCTCTGACCACGCCTCTCATCTGTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCAAATGTCTCCAGTTCTCTGACCACGCCTCTCATCTGTAAGG  600

seq1  GATAGGAGTAGCCATTCGGACAGCACAGAGTGGCAAAGCCAGACTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGTAGCCATTCGGACAGCACAGAGTGGCAAAGCCAGACTAGACT  650

seq1  GAAGCTCTGCTGCTCCCAAATGGCCTAGTTGGGCCAGTGACGTCATCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTGCTGCTCCCAAATGGCCTAGTTGGGCCAGTGACGTCATCTCA  700

seq1  GCCCATCCGATGCCAAGATAGGGCAGAGCTAGATGAGAAAAGGCTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCCGATGCCAAGATAGGGCAGAGCTAGATGAGAAAAGGCTCCACA  750

seq1  CCATATGTTCTAGGATCTCAGTCACAGATCAAGGCAGTAAACTAGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGTTCTAGGATCTCAGTCACAGATCAAGGCAGTAAACTAGTTCTT  800

seq1  AAAATTGCATGTTCTGCCCTCTCATGTCTACACAGCCTAGAGAGACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCATGTTCTGCCCTCTCATGTCTACACAGCCTAGAGAGACAGAG  850

seq1  TTTGAGTTGAGGGAAAAAATTTCGTTAAAAAAAAAATTGAGGTGGG--TG  898
      |||||||||||||||||||||||||| ||||||||||||| |||||   |
seq2  TTTGAGTTGAGGGAAAAAATTTCGTTTAAAAAAAAATTGAAGTGGGGTGG  900

seq1  GTGGTAGTGCAC-ACCTTTGAATCCTAGCACCCAGG-AAACAGAGGC-AG  945
      |||||||||||| |||||||| |||||||||||||| |||||||||| ||
seq2  GTGGTAGTGCACAACCTTTGATTCCTAGCACCCAGGAAAACAGAGGCAAG  950

seq1  GTGGATCTCTAAGTTCAAGGCCAGCGAG--TGAGTTCTACGACA-GCCAG  992
      |||||||||| ||||| |||||||||||   ||||||||||||| |||||
seq2  GTGGATCTCT-AGTTC-AGGCCAGCGAGGTGGAGTTCTACGACAGGCCAG  998

seq1  GGCTACATAAAGAAACCCTGTCTCCAAAAACAAAAAACAAAAACAAAAAT  1042
      |||||||| ||  |||| |||||| ||    | |||||||||   |||||
seq2  GGCTACATTAAAGAACCTTGTCTCTAA----ACAAAACAAAA--CAAAAT  1042

seq1  CCCCCAACAACCTCCCGTACCAACCCCCAGGAAAAAAAAACACACAAAAA  1092
      |||| ||||||   ||||  ||||||| ||||||||||    |||||| |
seq2  CCCCGAACAAC--TCCGTTACAACCCCAAGGAAAAAAA---CCACAAAGA  1087

seq1  ATTGGCATG  1101
      | |||||||
seq2  A-TGGCATG  1095