BAC Information

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BAC

Clone NameB6Ng01-311L17
Chromosome4 (Build37)
Map Location 92,963,273 - 93,084,955
singlet/doubletdoublet
Overlap geneTusc1
Upstream geneLOC620269, LOC384125
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311L17.bB6Ng01-311L17.g
ACCGA103378GA103379
length2291,151
definitionB6Ng01-311L17.b B6Ng01-311L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,084,727 - 93,084,955)(92,963,273 - 92,964,422)
sequence
aatgaactttgattcttacattaatgagtaattctcttatgctgaaagaa
attatgcttctgaattttattattttaaagattaaaaataaatcaggaac
atgttttttgatattgtcaaaacaacagtacatattagtgtcaaagaggg
aagttgaaggcactgaaggcaggttggtatctattggactggagatggtc
agaagtgtgtatgtgtgtatatgtgtgtg

gaattctctgagctttccctattaatttatgcattaagacatatttgaac
agctgctgtgcatcaaacagtgtgctggaggccaaggttacaaacttaaa
tgtctagtgtatgaagaagagaatgagacagagccatagataggcgagca
tgtttatgtgtgcagagagaatgagcctagaagaaaacatgattcgactt
gggatttgaatgatggagaactagacacgtatagttctataccagaacac
gtatccccaggtttgaaagatgagaaaaagagttagcagagtcaacaaag
ttggcaccagagaagctatcataaatgttagaaattaatgctagagtatt
tgtgcctgccttcatattctcaccctgtattattcatacaaagggagaca
agtatgggttcgaaatgctctcaatagtttctaatggttggtctccatgt
ccattgttctgtatcacagtggactggctgtgaatcatcagggttacgtt
ttcctgtatacactaatcatgttactcaggaactgtctagtcttaggggt
tgtcccaattctacactgtacaatcactgaggtcactgttttagactcag
actttgatgcctcactttcctcatcacccttattaaggtgctatgttaaa
tttttttctttacaatttttttctaagttaaatatttttggggtcacaat
attctacacacaagtgaatgcaagttaatggtgctaatggagaaatggct
tttgttttgaaaattgagtatgtgtgaattttacagtgagaagacattct
ccacccatatgaaagagttttaatttcttcttgttgtattatgtcattca
tataatactctttgcttctgggttaaaaaaaattagagcaaaatcaaaat
gttatcccaaatgttactggtcaaggaaggagagattaaaaacattccct
aacatgttcacgttccacagtgatcagcttatattgatcatcaatagcat
tggacttgaattgatgtatacttcatgttacaggactgaatattctgtaa
taaattgaatgttatacattatatatatgtaataccatatacattcagaa
gtatgcatatattctataatatgcatactagtgaataggcagcctaattt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93084727_93084955
seq2: B6Ng01-311L17.b_54_282 (reverse)

seq1  CACACACATATACACACATACACACTTCTGACCATCTCCAGTCCAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATATACACACATACACACTTCTGACCATCTCCAGTCCAATAGA  50

seq1  TACCAACCTGCCTTCAGTGCCTTCAACTTCCCTCTTTGACACTAATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACCTGCCTTCAGTGCCTTCAACTTCCCTCTTTGACACTAATATGT  100

seq1  ACTGTTGTTTTGACAATATCAAAAAACATGTTCCTGATTTATTTTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTTTTGACAATATCAAAAAACATGTTCCTGATTTATTTTTAATC  150

seq1  TTTAAAATAATAAAATTCAGAAGCATAATTTCTTTCAGCATAAGAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATAAAATTCAGAAGCATAATTTCTTTCAGCATAAGAGAATT  200

seq1  ACTCATTAATGTAAGAATCAAAGTTCATT  229
      |||||||||||||||||||||||||||||
seq2  ACTCATTAATGTAAGAATCAAAGTTCATT  229


seq1: chr4_92963273_92964422
seq2: B6Ng01-311L17.g_67_1217

seq1  GAATTCTCTGAGCTTTCCCTATTAATTTATGCATTAAGACATATTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGCTTTCCCTATTAATTTATGCATTAAGACATATTTGAAC  50

seq1  AGCTGCTGTGCATCAAACAGTGTGCTGGAGGCCAAGGTTACAAACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGCATCAAACAGTGTGCTGGAGGCCAAGGTTACAAACTTAAA  100

seq1  TGTCTAGTGTATGAAGAAGAGAATGAGACAGAGCCATAGATAGGCGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTGTATGAAGAAGAGAATGAGACAGAGCCATAGATAGGCGAGCA  150

seq1  TGTTTATGTGTGCAGAGAGAATGAGCCTAGAAGAAAACATGATTCGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGTGCAGAGAGAATGAGCCTAGAAGAAAACATGATTCGACTT  200

seq1  GGGATTTGAATGATGGAGAACTAGACACGTATAGTTCTATACCAGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAATGATGGAGAACTAGACACGTATAGTTCTATACCAGAACAC  250

seq1  GTATCCCCAGGTTTGAAAGATGAGAAAAAGAGTTAGCAGAGTCAACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCCAGGTTTGAAAGATGAGAAAAAGAGTTAGCAGAGTCAACAAAG  300

seq1  TTGGCACCAGAGAAGCTATCATAAATGTTAGAAATTAATGCTAGAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACCAGAGAAGCTATCATAAATGTTAGAAATTAATGCTAGAGTATT  350

seq1  TGTGCCTGCCTTCATATTCTCACCCTGTATTATTCATACAAAGGGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCCTTCATATTCTCACCCTGTATTATTCATACAAAGGGAGACA  400

seq1  AGTATGGGTTCGAAATGCTCTCAATAGTTTCTAATGGTTGGTCTCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGTTCGAAATGCTCTCAATAGTTTCTAATGGTTGGTCTCCATGT  450

seq1  CCATTGTTCTGTATCACAGTGGACTGGCTGTGAATCATCAGGGTTACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCTGTATCACAGTGGACTGGCTGTGAATCATCAGGGTTACGTT  500

seq1  TTCCTGTATACACTAATCATGTTACTCAGGAACTGTCTAGTCTTAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATACACTAATCATGTTACTCAGGAACTGTCTAGTCTTAGGGGT  550

seq1  TGTCCCAATTCTACACTGTACAATCACTGAGGTCACTGTTTTAGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAATTCTACACTGTACAATCACTGAGGTCACTGTTTTAGACTCAG  600

seq1  ACTTTGATGCCTCACTTTCCTCATCACCCTTATTAAGGTGCTATGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATGCCTCACTTTCCTCATCACCCTTATTAAGGTGCTATGTTAAA  650

seq1  TTTTTTTCTTTACAATTTTTTTCTAAGTTAAATATTTTTGGGGTCACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTACAATTTTTTTCTAAGTTAAATATTTTTGGGGTCACAAT  700

seq1  ATTCTACACACAAGTGAATGCAAGTTAATGGTGCTAATGGAGAAATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACACACAAGTGAATGCAAGTTAATGGTGCTAATGGAGAAATGGCT  750

seq1  TTTGTTTTGAAAATTGAGTATGTGTGAATTTTACAGTGAGAAGACATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAAAATTGAGTATGTGTGAATTTTACAGTGAGAAGACATTCT  800

seq1  CCACCCATATGAAAGAGTTTTAATTTCTTCTTGTTGTATTATGTCATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATATGAAAGAGTTTTAATTTCTTCTTGTTGTATTATGTCATTCA  850

seq1  TATAATACTCTTTGCTTCTGGGTT-AAAAAAATTAGAGCAAAATCAAAAT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATAATACTCTTTGCTTCTGGGTTAAAAAAAATTAGAGCAAAATCAAAAT  900

seq1  GTTATCCCAAATGTTACT-GTCAAAGAAGGAGAGATTAAAAACATT-CCT  947
      |||||||||||||||||| ||||| ||||||||||||||||||||| |||
seq2  GTTATCCCAAATGTTACTGGTCAAGGAAGGAGAGATTAAAAACATTCCCT  950

seq1  AACATGTTCACGTTCCACAGTGATCAGCTTATATTGATCATCAATAGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCACGTTCCACAGTGATCAGCTTATATTGATCATCAATAGCAT  1000

seq1  T-GACTTGAAATGATGTATAC-TCATGTTACAGGACTGAAATATCTGTAA  1045
      | |||||||| |||||||||| ||||||||||||||||||   |||||||
seq2  TGGACTTGAATTGATGTATACTTCATGTTACAGGACTGAATATTCTGTAA  1050

seq1  ATAAAATTGGAAATGTTATACATTATATATGT---ATAACATATACA-TC  1091
         ||||||  ||||||||||||||||||| |   ||| |||||||| ||
seq2  --TAAATTG--AATGTTATACATTATATATATGTAATACCATATACATTC  1096

seq1  AGAAAGTAATGCAATATAATTCTAATAATAATGCATACTAGTG-ATAGGC  1140
      || |||| |||| |||| ||||| ||||| ||||||||||||| ||||||
seq2  AG-AAGT-ATGC-ATAT-ATTCT-ATAAT-ATGCATACTAGTGAATAGGC  1140

seq1  AGCCTATTTT-  1150
      |||||| ||| 
seq2  AGCCTAATTTT  1151


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