BAC Information

Click to search

BAC

Clone NameB6Ng01-312C08
Chromosome4 (Build37)
Map Location 16,338,403 - 16,339,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312C08.bB6Ng01-312C08.g
ACCGA103686GA103687
length1,2011,067
definitionB6Ng01-312C08.b B6Ng01-312C08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctactgaggaataccgaatggctgagaagcatctgaaaagatg
tcaacccttaatcatcagggaaatgcaaatcaaaacaaccttgagattcc
cacctcacaccagtcagaatggctaagatcaataattcaggtgagagcag
atgctggcggggatgtggagaaagaggaacactcttccattactggtggg
gttgcaagctggtataaccactctagaaatcagtctggtgattcctcaga
aaattggacatagtcctgttggatgatccagcaattcttctcctgggcat
atacacagatgatgttccaacttgtcataatgacacatgctccattatgt
tcatagcaacattatttttatagccagaagctggaaagagccaaagatgt
ccctcaacagaggaatggatatagaaaatgtggtacatttacacaatggg
attcaactcagctattaaaaacaatgaatttatgaaattcttaggcaatt
ggatggatctggtggatatcatcctgagtgaggtaacccaatcataaaag
aacacacatgatatcactcactgataagtagatattagctcagaaattta
gaatacccaaggtacaatttgtaaaacacatgaaactcaagaagtaggaa
gaccaaagtgtggatacttgttccttcttagaatggggaacaaatactca
tggaaggagttacggagacaagtttcagagccgagatagaaggaaggacc
atccagagtctaacacacccggatatctattctataaacaaacaccaaac
ccagacactattgtatatgccagcaagattttgctaacaggaccctgata
tagctaactcttctgaggctatgccagcgcctagcaaatacagtagcgga
tgctcacagtcatctagtggatggaacacaggacccccaataaaggaact
agaaaaagtactcaaggagataaaggggtctgtaaccctatagaggacac
aatatgaactaacccagtaccccctcagagctcatgtctctagctgcata
tgtagcagatatgggcctagtcagcatcagtgggaagagagcctggatct
gcgatgattatatgcccaagtcaggtattccaaggttaaggaaagaattg
gttgagtggggagcagtcagagggaggctcatgatgctcactgctggaca
t
gaattctaaaagctggagaaatagtcttctccagggatgaacacaccaac
tgattatataatacaaaatagttatgccaaaaaacatgcacatgagtagt
actatatagactaagaagcttatatttatatatttaggagtttgtaagca
tatatagatatataaatgcacataacagcaatcagtgaagaaagtggacc
atgagttgagagaaggagatgtaggaaagggtgtgaagggaggaaaggta
gaaatgatgaataatattatattctcaaaaagaagaaagtaacaaaattt
tacttacaaaatcacattaagacttttataatatactacttatctgctac
cttctttttaaaaagaattatccttaaaaacattaacctattctaagcaa
gtgctaaagatgtgtacttaccgtcaagacaaatttatcttaagagaaat
aattcatcactcagtgagacttatattcgacatttagctataacttattt
tccttcaaagtgttatatgaaattatcttaatttgcattgtgcaatacaa
gaataaatacatgaatattaagtaaaaagcataatttatttactggaaac
ataaagtgtataactaacacatatattgttaacaatgaaatatccaaagc
ccaaataatgctgtgtgagttaagagtgcttcaagttctattgttcaaaa
gccctccctcaaaactgctgagattaaagcattccacaaacccacagaga
aaaattctataaatgagtttgaaacacttaaaatgacaaaaatgtgtttc
aaaaagggtagcatgattcttcatcctcagtctagatgcattaggttcaa
gtgaaacgttgttatcaaaagcgaaaagagtcaacacagcctagcctata
ccaggaccagtgagagctgagcacagctgcacacatctaggacacaaaca
ctgggagagaaacaaaaaagcccagcaggatcttcttggggtttcaaggc
cagcatctagctaggacagaagacttgctgtagtaccaggtattacactg
agaatctccgttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16338403_16339474
seq2: B6Ng01-312C08.g_67_1133 (reverse)

seq1  AAATCAAAGGAGATTCTCAGTGTAAATACCTGGTACTTACAGCAAGTC-T  49
      ||||||| ||||||||||||||| |||||||||||| ||||||||||| |
seq2  AAATCAACGGAGATTCTCAGTGT-AATACCTGGTAC-TACAGCAAGTCTT  48

seq1  CTGTCTTAGCTAGATTGCTGGCC-TGAAAACCCAAG-AGATCCTGCTGGG  97
      ||||| |||||||| |||||||| ||||| |||||| |||||||||||||
seq2  CTGTCCTAGCTAGA-TGCTGGCCTTGAAACCCCAAGAAGATCCTGCTGGG  97

seq1  CTTTTTTTTTTTTTTTTCTCT-CCAGTGTTTGTGTCCTAGATGTGTGCAG  146
      |      |||||| ||||||| ||||||||||||||||||||||||||||
seq2  C------TTTTTTGTTTCTCTCCCAGTGTTTGTGTCCTAGATGTGTGCAG  141

seq1  CTGTGCTCAGCTCTCACTGGTCCTGGTATAGGCTAGGCTGTGTTGACTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCAGCTCTCACTGGTCCTGGTATAGGCTAGGCTGTGTTGACTCT  191

seq1  TTTCGCTTTTGATAACAACGTTTCACCTGAACCTAATGCATCTAGACTGA  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCGCTTTTGATAACAACGTTTCACTTGAACCTAATGCATCTAGACTGA  241

seq1  GGATGAAGAATCATGCTACCCTTTTTGAAACACATTTTTGTCATTTTAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGAATCATGCTACCCTTTTTGAAACACATTTTTGTCATTTTAAG  291

seq1  TGTTTCAAACTCATTTATAGAATTTTTCTCTGTGGGTTTGTGGAATGCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAACTCATTTATAGAATTTTTCTCTGTGGGTTTGTGGAATGCTT  341

seq1  TAATCTCAGCAGTTTTGAGGGAGGGCTTTTGAACAATAGAACTTGAAGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGCAGTTTTGAGGGAGGGCTTTTGAACAATAGAACTTGAAGCA  391

seq1  CTCTTAACTCACACAGCATTATTTGGGCTTTGGATATTTCATTGTTAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTCACACAGCATTATTTGGGCTTTGGATATTTCATTGTTAACA  441

seq1  ATATATGTGTTAGTTATACACTTTATGTTTCCAGTAAATAAATTATGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTTAGTTATACACTTTATGTTTCCAGTAAATAAATTATGCTT  491

seq1  TTTACTTAATATTCATGTATTTATTCTTGTATTGCACAATGCAAATTAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAATATTCATGTATTTATTCTTGTATTGCACAATGCAAATTAAG  541

seq1  ATAATTTCATATAACACTTTGAAGGAAAATAAGTTATAGCTAAATGTCGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATATAACACTTTGAAGGAAAATAAGTTATAGCTAAATGTCGA  591

seq1  ATATAAGTCTCACTGAGTGATGAATTATTTCTCTTAAGATAAATTTGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTCTCACTGAGTGATGAATTATTTCTCTTAAGATAAATTTGTCT  641

seq1  TGACGGTAAGTACACATCTTTAGCACTTGCTTAGAATAGGTTAATGTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTAAGTACACATCTTTAGCACTTGCTTAGAATAGGTTAATGTTTT  691

seq1  TAAGGATAATTCTTTTTAAAAAGAAGGTAGCAGATAAGTAGTATATTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAATTCTTTTTAAAAAGAAGGTAGCAGATAAGTAGTATATTATA  741

seq1  AAAGTCTTAATGTGATTTTGTAAGTAAAATTTTGTTACTTTCTTCTTTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTAATGTGATTTTGTAAGTAAAATTTTGTTACTTTCTTCTTTTT  791

seq1  GAGAATATAATATTATTCATCATTTCTACCTTTCCTCCCTTCACACCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATAATATTATTCATCATTTCTACCTTTCCTCCCTTCACACCCTT  841

seq1  TCCTACATCTCCTTCTCTCAACTCATGGTCCACTTTCTTCACTGATTGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATCTCCTTCTCTCAACTCATGGTCCACTTTCTTCACTGATTGCT  891

seq1  GTTATGTGCATTTATATATCTATATATGCTTACAAACTCCTAAATATATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGCATTTATATATCTATATATGCTTACAAACTCCTAAATATATA  941

seq1  AATATAAGCTTCTTAGTCTATATAGTACTACTCATGTGCATGTTTTTTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGCTTCTTAGTCTATATAGTACTACTCATGTGCATGTTTTTTGG  991

seq1  CATAACTATTTTGTATTATATAATCAGTTGGTGTGTTCATCCCTGGAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTATTTTGTATTATATAATCAGTTGGTGTGTTCATCCCTGGAGAA  1041

seq1  GACTATTTCTCCAGCTTTTAGAATTC  1072
      ||||||||||||||||||||||||||
seq2  GACTATTTCTCCAGCTTTTAGAATTC  1067