BAC Information

Click to search

BAC

Clone NameB6Ng01-313J07
Chromosome4 (Build37)10 (Build37)
Map Location 12,825,206 - 12,826,305101,762,241 - 101,762,278
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313J07.bB6Ng01-313J07.g
ACCGA104754GA104755
length1,096973
definitionB6Ng01-313J07.b B6Ng01-313J07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,825,206 - 12,826,305)(101,762,241 - 101,762,278)
sequence
gaattctctaggagacacattctgggctttgagcctattcctggggatga
acaagagaagaaggatatcctactttgaataggagtgccatggtgtccta
gagggctctcctggaatgaatgaaaatgagcaacacaacctgacacctca
gttagagacatgattgttagtatgcttcctctgccatggtagaccatatc
cttttaaaatagttagcacaaacacacctttcattaagaagcattctggg
gtattttatttcagtggcaaaataaaagtgattaatacagaacattggta
ctaggaatggagctgtggctttaataaaatattaacaaatagaatctata
ggcctttgacagtggttgcaacgactagctagagacattctagaatctat
aaacaagacttctgagttcaaggccagtctggtctacaaagtgagttcta
ggacagccagggctatacaaggaaaccctgtctcaaaaataaaacaaaac
aaacaaacaaaaaacaaaaaaaaagttttaatgcagtctgatgggagttt
gggggctcaaacttctctcatacattgtagtctttttctttcaaaattat
tgttccatatatgtagatatgcaaaaatatataaatatataattttctaa
gtctatttttgtggtttgtgtgtatgtttcttcaggactgagcattgaag
gaaaaaatagcggactaattcaagagagaggcctcttcctctggtagtcg
ttagtccttgtatttctttgtctatggtgagatccagaaaaactttccct
tttccacattaacatgtccattggtattgccattttcccagtgttactta
tgcagccttttctaggagaggcagtttcacagcagacttccccaatattc
tggctcttacagtctttctgtcctttcttctgctatgttccctgaggcat
agatacatgagctctgatgcagatgtatctatgttccctgaggcatagat
acatgagctctgatgcagatgtattcattaggacttgactcccatgatat
gggacaatgtttcattattaagttattgatcatagattaccctata

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagagtgtcctggactgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctttgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccgattgtctggagt
cgaagatgttgccgcctcaaatatgttatcttgtgttgtgagtacaaagt
tcccatgcccacagatcactagagaaaccgggaatgttaaagccagaagg
ttttctcctcaatgaaggaaataaatatctgttctctacggacaagactg
ggagtggaaactgttagagacctggtgacctttgctatctacagagccag
actgtccccaaatccctcagagtgtttgtccctgactctccctccctaga
cctttatctttagctctccattaataaaacccatccttaggtgagacatc
acatgtactttatacagactactgacgtccatgctatgtcagagaataca
ccagatcctaggccctttaagctatagaatgcatcttcatggtcacatat
actttaagttgggttttgaagtaattatgcctctttgtgcacccaatatt
gtattgtaccagagaggttatgttttggttttgggctttggtttgttttt
ttgtttgtttttgttgttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12825206_12826305
seq2: B6Ng01-313J07.b_44_1138

seq1  AATTCTCTAGGAGACACATTCTGGGCTTTGAGCCTATTCCTGGGGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTAGGAGACACATTCTGGGCTTTGAGCCTATTCCTGGGGATGAA  50

seq1  CAAGAGAAGAAGGATATCCTACTTTGAATAGGAGTGCCATGGTGTCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGAAGGATATCCTACTTTGAATAGGAGTGCCATGGTGTCCTAG  100

seq1  AGGGCTCTCCTGGAATGAATGAAAATGAGCAACACAACCTGACACCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTCCTGGAATGAATGAAAATGAGCAACACAACCTGACACCTCAG  150

seq1  TTAGAGACATGATTGTTAGTATGCTTCCTCTGCCATGGTAGACCATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACATGATTGTTAGTATGCTTCCTCTGCCATGGTAGACCATATCC  200

seq1  TTTTAAAATAGTTAGCACAAACACACCTTTCATTAAGAAGCATTCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAGTTAGCACAAACACACCTTTCATTAAGAAGCATTCTGGGG  250

seq1  TATTTTATTTCAGTGGCAAAATAAAAGTGATTAATACAGAACATTGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTCAGTGGCAAAATAAAAGTGATTAATACAGAACATTGGTAC  300

seq1  TAGGAATGGAGCTGTGGCTTTAATAAAATATTAACAAATAGAATCTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGGAGCTGTGGCTTTAATAAAATATTAACAAATAGAATCTATAG  350

seq1  GCCTTTGACAGTGGTTGCAACGACTAGCTAGAGACATTCTAGAATCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGACAGTGGTTGCAACGACTAGCTAGAGACATTCTAGAATCTATA  400

seq1  AACAAGACTTCTGAGTTCAAGGCCAGTCTGGTCTACAAAGTGAGTTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACTTCTGAGTTCAAGGCCAGTCTGGTCTACAAAGTGAGTTCTAG  450

seq1  GACAGCCAGGGCTATACAAGGAAACCCTGTCTCAAAAATAAAACAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAAGGAAACCCTGTCTCAAAAATAAAACAAAACA  500

seq1  AACAAACAAAAAACAAAAAAAAAGTTTTAATGCAGTCTGATGGGAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAACAAAAAAAAAGTTTTAATGCAGTCTGATGGGAGTTTG  550

seq1  GGGGCTCAAACTTCTCTCATACATTGTAGTCTTTTTCTTTCAAAATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAAACTTCTCTCATACATTGTAGTCTTTTTCTTTCAAAATTATT  600

seq1  GTTCCATATATGTAGATATGCAAAAATATATAAATATATAATTTTCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATATATGTAGATATGCAAAAATATATAAATATATAATTTTCTAAG  650

seq1  TCTATTTTTGTGGTTTGTGTGTATGTTTCTTCAGGACTGAGCATTGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTGTGGTTTGTGTGTATGTTTCTTCAGGACTGAGCATTGAAGG  700

seq1  AAAAAATAGCGGACTAATTCAAGAGAGAGGCCTCTTCCTCTGGTAGTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGCGGACTAATTCAAGAGAGAGGCCTCTTCCTCTGGTAGTCGT  750

seq1  TAGTCCTTGTATTTCTTTGTCTATGGTGAGATCCAGAAAAACTTTCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTGTATTTCTTTGTCTATGGTGAGATCCAGAAAAACTTTCCCTT  800

seq1  TTCCACATTAACATGTCCATTGGTATTGCCATTTTCCCAGTGTTACTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTAACATGTCCATTGGTATTGCCATTTTCCCAGTGTTACTTAT  850

seq1  GCAGCCTTTTCTAGGAGAGGCAGTTTCACAGCAGACTTCCCCAATATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTTTCTAGGAGAGGCAGTTTCACAGCAGACTTCCCCAATATTCT  900

seq1  GGCTCTTACAGTCTTTCTGTCCTTTCTTCTGCTATGTTCCCTGAGGCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTACAGTCTTTCTGTCCTTTCTTCTGCTATGTTCCCTGAGGCATA  950

seq1  GATACATGAGCTCTGATGCAGATGTATCTATGTTCCCTGAGGCATAGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGAGCTCTGATGCAGATGTATCTATGTTCCCTGAGGCATAGATA  1000

seq1  CATGAGCTCTGATGCAGATGTATTCATTAGGACTTGACTCCCCATGATAT  1050
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGAGCTCTGATGCAGATGTATTCATTAGGACTTGACT-CCCATGATAT  1049

seq1  GGGACAAATGTTTCAATTATTAAGTTATTGAATTCATAGATTACCCTATA  1100
      ||||| |||||||| ||||||||||||||||  |||||||||||||||||
seq2  GGGAC-AATGTTTC-ATTATTAAGTTATTGA--TCATAGATTACCCTATA  1095


seq1: chr10_101762241_101762278
seq2: B6Ng01-313J07.g_1002_1038 (reverse)

seq1  AAAACAAACAAAAAAAACAAACAAAAAAACAAACCAAA  38
       ||| |||||| ||||||||||||||||||||||||||
seq2  -AAAAAAACAACAAAAACAAACAAAAAAACAAACCAAA  37


| Home | SequenceCutter | Blast | Download |