BAC Information

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BAC

Clone NameB6Ng01-314K19
Chromosome4 (Build37)16 (Build37)
Map Location 70,146,590 - 70,147,02984,292,234 - 84,293,270
singlet/doubletsingletsinglet
Overlap geneMegf9
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2
Downstream geneLOC100039565, LOC100039979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314K19.bB6Ng01-314K19.g
ACCGA105537GA105538
length6571,041
definitionB6Ng01-314K19.b B6Ng01-314K19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,146,590 - 70,147,029)(84,292,234 - 84,293,270)
sequence
gaattctttcttccttctgtgctgagtagtacagctctgtggactgagca
cctagcagatatattccggcttttctggcatattgatggctatttttgag
aaatgtaaactccgctaagttaaatttgcccattaaatcttcaataatct
tagaattatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tatgtatatatatgtgtgtgtttatgatttttagtaatttcaaagttttt
cttaatcttcatagcaactctatatatagagattagtaagtgacaaaaat
ataaagaattccaaattaggctttccaagtctaagccctggatttaacac
catgccccatatcacctataatgaaacgattaatagtctttattgttatt
gagactatagtaacttcttttttttttttttttttttgagaaaaggtttc
attatgtagccctagctggcttataacccttaaaacaggctatcctcaaa
ctcaaggagttatatctgcctttgctgtctctatatctggcacttctcct
ctacttctcaggtgctgggataaaaatcgtgcgctactatcactggcggc
tccatgaagtacttccgtaccatgcctcatatacctagccatacaagtta
tgttcac
gaattcaggattcaggcttattaaattgtagttggtgcaataatgagaag
aatagggaatggctggcatgacccttgaaaaagataaagtttttgttgat
aggaaaataatacaaagtgcaagtacatttagaaaaatggaaaatttaca
gttagacacattttatggcaactggggagatgccagggtcaaaactcttc
tgtctaatcacaaagaaaatattaattacattagggaaagaattgctctg
ttgtgagaacagcttttaagaaactacatatggaatgaaatggttcttag
atgtttcatttggttacaaagggtcaatgttagcttcagaatatcacctt
gatgtgtaaatgctaatgatggagagaaaaaggtgtccctcaaaagtatg
tgtgatatggggttacatgtataaggatcacttaagcaccaatgtttgga
catttctatcctattaggaggagtatacagtgtaatctgaaaattttcat
gaattcagtcactacagcctttcttttaaaaataataataataatttttg
ttgatatgaaaacattgaaatatcactctgtagttaaatcggaaaaaaat
aaattgtgggatacagttatcgagctttggtaggtcatctgtctggatca
agtgcacaggttggagatcctccgtaaagctttatggaggtttataaaat
ttatgggaatagatgggttttagtatttctgttttttagagtttctagga
aaggtaactggaacaattgggaggcagaatgtgaaagtgtcatgaagatg
tggaaaaatatacagccaggtctcaaaggggtaagtggaactcaagtgag
aagcagagccactgctggatccagaccagttagaatagctggtgtgatgg
gttgttattttctaccgaacatagatgattatcatattatggttcgcatc
agaaatattctgagattcaggctcttatacgttcatgtcagattaaatac
gaaagcaaaataaattaaaactaaaaatggagtctttaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_70146590_70147029
seq2: B6Ng01-314K19.b_264_702 (reverse)

seq1  GTGAATATAACTTGTATGGCTATGTATATGAGGCATGGTAAGGAAGTACT  50
      ||||| |||||||||||||||| ||||||||||||||||| |||||||||
seq2  GTGAACATAACTTGTATGGCTAGGTATATGAGGCATGGTACGGAAGTACT  50

seq1  TCATGGAGCCACCAGTGATAGTAGCACACAATTTTAATCCCAGCACTTGA  100
      |||||||||| |||||||||||||| ||| ||||| |||||||||| |||
seq2  TCATGGAGCCGCCAGTGATAGTAGCGCACGATTTTTATCCCAGCACCTGA  100

seq1  GAAGTAGAGGCAGAAGTGGCAGATATAGAGACAGCAAAGGCAGATATAAC  150
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  GAAGTAGAGG-AGAAGTGCCAGATATAGAGACAGCAAAGGCAGATATAAC  149

seq1  TCCATGAGTTTGAGGATAGCCTGTTTTAAGAGTTCTAAGCCAGCTAGGGC  200
      ||| |||||||||||||||||||||||||| ||| |||||||||||||||
seq2  TCCTTGAGTTTGAGGATAGCCTGTTTTAAGGGTTATAAGCCAGCTAGGGC  199

seq1  TACATAATGAAACCTTTTCTCAAAAAAAAAAAAAAAAAAAAGAAGTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAAACCTTTTCTCAAAAAAAAAAAAAAAAAAAAGAAGTTACT  249

seq1  ATAGTCTCAATATCAATAAAGACTATTAATCGTTTCATTATAGGTGATAT  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCAATAACAATAAAGACTATTAATCGTTTCATTATAGGTGATAT  299

seq1  GTGGCATGGTGTTAAATCCAGGGCTTAGACTTGGAAAGCCTAATTTGGAA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGTGTTAAATCCAGGGCTTAGACTTGGAAAGCCTAATTTGGAA  349

seq1  TTCTTTATATTTTTGTGACTTACTAATCTCTATATATAGAGTTGCTATGA  400
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCTTTATATTTTTGTCACTTACTAATCTCTATATATAGAGTTGCTATGA  399

seq1  AGATTAAGAAAAACTTTGAAATTACTAAAAATCATAAACA  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAAAAACTTTGAAATTACTAAAAATCATAAACA  439

seq1: chr16_84292234_84293270
seq2: B6Ng01-314K19.g_67_1107 (reverse)

seq1  ATTTTAAGACT-CATTTTT-GTTTTATTTTATTTTGTTT---TGTTTTAT  45
      |||| |||||| ||||||| |||||| ||||||||| ||   | ||| ||
seq2  ATTTAAAGACTCCATTTTTAGTTTTAATTTATTTTGCTTTCGTATTTAAT  50

seq1  CTGACATGAA-GTAT-AGAGCCTGAATCTCAGAATATTTCTGATGGGAA-  92
      |||||||||| |||| ||||||||||||||||||||||||||||| ||| 
seq2  CTGACATGAACGTATAAGAGCCTGAATCTCAGAATATTTCTGATGCGAAC  100

seq1  CATAATATGATAATTATCTATGTTTCGGTAGAAAATAACAAACCATCACA  142
      |||||||||||||| ||||||| |||||||||||||||||| ||||||||
seq2  CATAATATGATAATCATCTATG-TTCGGTAGAAAATAACAACCCATCACA  149

seq1  CCAGCTATTTCTAACTGGTCTGGATCCAGCAGTGGCTCTGCTTTCTCACT  192
      ||||||| ||||||||||||||||||||||||||||||||| ||||||| 
seq2  CCAGCTA-TTCTAACTGGTCTGGATCCAGCAGTGGCTCTGC-TTCTCAC-  196

seq1  TTGAGTTCCACTTACCCCTTTGAGACCTGGCTGTATATTTTTCCACATCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCCACTTACCCCTTTGAGACCTGGCTGTATATTTTTCCACATCT  246

seq1  TCATGACACTTTCACATTCTGCCTCCCAATTGTTCCAGTTACCTTTCCTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACACTTTCACATTCTGCCTCCCAATTGTTCCAGTTACCTTTCCTA  296

seq1  GAAACTCTAAAAAACAGAAATACTAAAACCCATCTATTCCCATAAATTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTAAAAAACAGAAATACTAAAACCCATCTATTCCCATAAATTTT  346

seq1  ATAAACCTCCATAAAGCTTTACGGAGGATCTCCAACCTGTGCACTTGATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCTCCATAAAGCTTTACGGAGGATCTCCAACCTGTGCACTTGATC  396

seq1  CAGACAGATGACCTACCAAAGCTCGATAACTGTATCCCACAATTTATTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATGACCTACCAAAGCTCGATAACTGTATCCCACAATTTATTTT  446

seq1  TTTCCGATTTAACTACAGAGTGATATTTCAATGTTTTCATATCAACAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGATTTAACTACAGAGTGATATTTCAATGTTTTCATATCAACAAAA  496

seq1  ATTATTATTATTATTTTTAAAAGAAAGGCTGTAGTGACTGAATTCATGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTTTTAAAAGAAAGGCTGTAGTGACTGAATTCATGAA  546

seq1  AATTTTCAGATTACACTGTATACTCCTCCTAATAGGATAGAAATGTCCAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGATTACACTGTATACTCCTCCTAATAGGATAGAAATGTCCAA  596

seq1  ACATTGGTGCTTAAGTGATCCTTATACATGTAACCCCATATCACACATAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTGCTTAAGTGATCCTTATACATGTAACCCCATATCACACATAC  646

seq1  TTTTGAGGGACACCTTTTTCTCTCCATCATTAGCATTTACACATCAAGGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGGACACCTTTTTCTCTCCATCATTAGCATTTACACATCAAGGT  696

seq1  GATATTCTGAAGCTAACATTGACCCTTTGTAACCAAATGAAACATCTAAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTGAAGCTAACATTGACCCTTTGTAACCAAATGAAACATCTAAG  746

seq1  AACCATTTCATTCCATATGTAGTTTCTTAAAAGCTGTTCTCACAACAGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCATTCCATATGTAGTTTCTTAAAAGCTGTTCTCACAACAGAG  796

seq1  CAATTCTTTCCCTAATGTAATTAATATTTTCTTTGTGATTAGACAGAAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTTCCCTAATGTAATTAATATTTTCTTTGTGATTAGACAGAAGA  846

seq1  GTTTTGACCCTGGCATCTCCCCAGTTGCCATAAAATGTGTCTAACTGTAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACCCTGGCATCTCCCCAGTTGCCATAAAATGTGTCTAACTGTAA  896

seq1  ATTTTCCATTTTTCTAAATGTACTTGCACTTTGTATTATTTTCCTATCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATTTTTCTAAATGTACTTGCACTTTGTATTATTTTCCTATCAA  946

seq1  CAAAAACTTTATCTTTTTCAAGGGTCATGCCAGCCATTCCCTATTCTTCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTTATCTTTTTCAAGGGTCATGCCAGCCATTCCCTATTCTTCT  996

seq1  CATTATTGCACCAACTACAATTTAATAAGCCTGAATCCTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGCACCAACTACAATTTAATAAGCCTGAATCCTGAATTC  1041