BAC Information

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BAC

Clone NameB6Ng01-314O11
Chromosome4 (Build37)
Map Location 11,503,872 - 11,601,140
singlet/doubletdoublet
Overlap geneE130016E03Rik, LOC100039862
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847
Downstream geneGem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O11.bB6Ng01-314O11.g
ACCGA105693GA105694
length1,0441,034
definitionB6Ng01-314O11.b B6Ng01-314O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,503,872 - 11,504,926)(11,600,101 - 11,601,140)
sequence
gaattctgttctgagattgccctttatttcacagaactcataggtaagta
ctgtactttaggagtatctgtgttggctcccaagtatcagcacaatagga
attacagactatatatttttgtctaatgcattctttttaaatgtactatg
ttaatatttagaaatctgctttccttttctttttgcgtgtgtacattcca
tgctgtacattcatatttacttagggaacctgtgtgtgtgcctgcatgtg
tacagaggttagaattggtggtctgtcttcttccattattgatctctgct
ttatttactgagacaaggtctctgactaaacctcgaattctcagattggg
ctaatctaagctagccagttaccctgggaatcccctgtctttacttcctg
aatttagggattagaggtaggttgccatgcctatccagttttttgttttg
ttttgcttttaaagacaaaatttctttatgtagcccttggctgtcctgca
actggcctcaaactcatggagatctgcctgcctctgctaggattaaaagc
ttgcttatttgggtggtggggagctgaactctggttttcatgcttgaatg
acaggtacgttattgtctgagtcgtttcagtagcccatgttgtctcttga
tgcaaggtcttgttatatatagcccagtttagccttgaacttgtgctctc
cgcatccctgggcatgtaagcactacacccagcttctattcctttgtttg
tttgtgtccaggcctgctcagtcagtcaacaggttctccagtacaggagt
gaggattaaaaagaaaaaagacagttagacaacattgtagtgtgacccca
gtctattctgagactgaaggcaaatttttattttctaacccactttttat
accattttaattacatgcaagtatttcggcaagcagcaccataaggacta
ctacaagcagcagtgagtgattacttcccagtagttgtaaaaagggcttg
tcctattgaactaaatactgagccacttcctcgtcaagcccaaa
gaattctcagtgcctttgacacgaggtggaagggacatgcagtgatcttg
actgtgagacactggcacaagggcaaaggagcctcttggaagtcacctcc
tgggaaatgttcaactgaattctccctactcatgttcacacttggtgagc
tgtttgccttccagagctcttgctatgctccaaggaatggaaagaacggc
tctgatgctgccctggggggtgggggtggccaccacatctgcctttgcca
tgcactggcttagtgatcctgggcaggtgtgaaaaaatcgctcttcagtt
ttcctatctgtgaaccgttgagagtaacaacactttaaatgggtctgcct
catgcagttgttagggggaaaaaagtgaagagcctggcacatagtaagac
ctgtgtaagtgggcaggaccatcagtgattacagcagcccttgtgccccg
ctttcctatctctcaggccccaggaaagactccctaaccttgatcttgag
gctggtggaatggatgcttgacattgagtctattacctgggagtcctgga
agagccaggcagatccacaaatatctcacagtgtgagaggtctggaagct
gacgtttcagagccgtgtggtggtgttagcaattccctgatgtctttcat
tcttctctcaggggtccagggaactcaagcttatttctgagtctatctgt
cataggctatgaaacggatcatgcaagcagcagatgagaggaaccctgct
tcctttccgcaagtttcctgctgtttcagctgtatatacctcctcccatt
ctagctgagtcttgggacagagggaagggagggagggtttccactctgca
ggaaggctccctgtcatttgtttgctatacccgttgcccctagttttata
gtactttgactttaaagaaagtttttcaagcaacagctgggcgaagagac
tcgcacaggagtgggccggagcccagctctcctcagcactggctatgtgt
gagcttgcttggcgatgacagtcctggtacgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11503872_11504926
seq2: B6Ng01-314O11.b_47_1090

seq1  GAATTCTGTTCTGAGATTGCCCTTTATTTCACAGAACTCATAGGTAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGAGATTGCCCTTTATTTCACAGAACTCATAGGTAAGTA  50

seq1  CTGTACTTTAGGAGTATCTGTGTTGGCTCCCAAGTATCAGCACAATAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTAGGAGTATCTGTGTTGGCTCCCAAGTATCAGCACAATAGGA  100

seq1  ATTACAGACTATATATTTTTGTCTAATGCATTCTTTTTAAATGTACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGACTATATATTTTTGTCTAATGCATTCTTTTTAAATGTACTATG  150

seq1  TTAATATTTAGAAATCTGCTTTCCTTTTCTTTTTGCGTGTGTACATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTAGAAATCTGCTTTCCTTTTCTTTTTGCGTGTGTACATTCCA  200

seq1  TGCTGTACATTCATATTTACTTAGGGAACCTGTGTGTGTGCCTGCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTACATTCATATTTACTTAGGGAACCTGTGTGTGTGCCTGCATGTG  250

seq1  TACAGAGGTTAGAATTGGTGGTCTGTCTTCTTCCATTATTGATCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGTTAGAATTGGTGGTCTGTCTTCTTCCATTATTGATCTCTGCT  300

seq1  TTATTTACTGAGACAAGGTCTCTGACTAAACCTCGAATTCTCAGATTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTGAGACAAGGTCTCTGACTAAACCTCGAATTCTCAGATTGGG  350

seq1  CTAATCTAAGCTAGCCAGTTACCCTGGGAATCCCCTGTCTTTACTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAAGCTAGCCAGTTACCCTGGGAATCCCCTGTCTTTACTTCCTG  400

seq1  AATTTAGGGATTAGAGGTAGGTTGCCATGCCTATCCAGTTTTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGGATTAGAGGTAGGTTGCCATGCCTATCCAGTTTTTTGTTTTG  450

seq1  TTTTGCTTTTAAAGACAAAATTTCTTTATGTAGCCCTTGGCTGTCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTAAAGACAAAATTTCTTTATGTAGCCCTTGGCTGTCCTGCA  500

seq1  ACTGGCCTCAAACTCATGGAGATCTGCCTGCCTCTGCTAGGATTAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTCAAACTCATGGAGATCTGCCTGCCTCTGCTAGGATTAAAAGC  550

seq1  TTGCTTATTTGGGTGGTGGGGAGCTGAACTCTGGTTTTCATGCTTGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTGGGTGGTGGGGAGCTGAACTCTGGTTTTCATGCTTGAATG  600

seq1  ACAGGTACGTTATTGTCTGAGTCGTTTCAGTAGCCCATGTTGTCTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACGTTATTGTCTGAGTCGTTTCAGTAGCCCATGTTGTCTCTTGA  650

seq1  TGCAAGGTCTTGTTATATATAGCCCAGTTTAGCCTTGAACTTGTGCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTCTTGTTATATATAGCCCAGTTTAGCCTTGAACTTGTGCTCTC  700

seq1  CGCATCCCTGGGCATGTAAGCACTACACCCAGCTTCTATTCCTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCCCTGGGCATGTAAGCACTACACCCAGCTTCTATTCCTTTGTTTG  750

seq1  TTTGTGTCCAGGCCTGCTCAGTCAGTCAACAGGTTCTCCAGTACAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCCAGGCCTGCTCAGTCAGTCAACAGGTTCTCCAGTACAGGAGT  800

seq1  GAGGATTAAAAAGAAAAAAGACAGTTAGACAACATTGTAGTGTGACCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTAAAAAGAAAAAAGACAGTTAGACAACATTGTAGTGTGACCCCA  850

seq1  GTCTATTCTGAGACTGAAGGCAAATTTTTATTTTCTAACCCACTTTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCTGAGACTGAAGGCAAATTTTTATTTTCTAACCCACTTTTTAT  900

seq1  ACCATTTTAATTACATGCAAGTATTTTCGGCAAGCAGCACCATAAGGAAC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  ACCATTTTAATTACATGCAAGTA-TTTCGGCAAGCAGCACCATAAGG-AC  948

seq1  TACTAACAAAGCAGCAAGTGAAGTGATTACTCCCAAGTTAGTTGTTAAAA  1000
      |||||   ||||||| |||| |||||||||| || || |||||| |||||
seq2  TACTA--CAAGCAGC-AGTG-AGTGATTACTTCCCAG-TAGTTG-TAAAA  992

seq1  AGGGCTTGTCATAATGACCAAAATACTTGAGCCCACTTCCTCGTCCAAGC  1050
      |||||||||| || ||| | |||||| |||| |||||||||||| |||||
seq2  AGGGCTTGTCCTATTGAACTAAATAC-TGAG-CCACTTCCTCGT-CAAGC  1039

seq1  CCAAA  1055
      |||||
seq2  CCAAA  1044

seq1: chr4_11600101_11601140
seq2: B6Ng01-314O11.g_66_1099 (reverse)

seq1  TTTCGTCACAGGACTGGTTCTTTCGCAAAGCAAGCCTCACACTTAGCCAG  50
      ||||||  ||||||||  ||  |||| ||||||| ||||||| |||||||
seq2  TTTCGTACCAGGACTG--TC-ATCGCCAAGCAAG-CTCACACATAGCCAG  46

seq1  TGCTGAGGAGAGCT-GGCTCCGTGCCCACTCCTGTGCGAGTCTCTTCGCC  99
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TGCTGAGGAGAGCTGGGCTCCG-GCCCACTCCTGTGCGAGTCTCTTCGCC  95

seq1  CAGCTGTTGCCTGAAAAACTTTTCTTTTAAAGTCAAAGTACTAT-AAACT  148
      |||||||||| |||||||||||   ||||||||||||||||||| |||||
seq2  CAGCTGTTGCTTGAAAAACTTT--CTTTAAAGTCAAAGTACTATAAAACT  143

seq1  AGGGGCAACGGGTATAGCAAACAAATTGACA-GGAGCCTTCCTGCAGAGT  197
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AGGGGCAACGGGTATAGCAAACAAA-TGACAGGGAGCCTTCCTGCAGAGT  192

seq1  GGAAACCCTCCCTCCCTTCCCTCTGTCCCAAGACTCAGCTAGAATGGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCCTCCCTCCCTTCCCTCTGTCCCAAGACTCAGCTAGAATGGGAG  242

seq1  GAGGTATATACAGCTGAAACAGCAGGAAACTTGCGGAAAGGAAGCAGGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATACAGCTGAAACAGCAGGAAACTTGCGGAAAGGAAGCAGGGT  292

seq1  TCCTCTCATCTGCTGCTTTGCATGATCCGTTTCATAGCCTATGACAGATA  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTCTCATCTGCTGC-TTGCATGATCCGTTTCATAGCCTATGACAGATA  341

seq1  GACTCAGAAATAAGCTTGAGTTCCCTGGACCCCTGAGAGAAGAATGAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAAATAAGCTTGAGTTCCCTGGACCCCTGAGAGAAGAATGAAAG  391

seq1  ACATCAGGGAATTGCTAACACCACCACACGGCTCTGAAACGTCAGCTTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGGAATTGCTAACACCACCACACGGCTCTGAAACGTCAGCTTCC  441

seq1  AGACCTCTCACACTGTGAGATATTTGTGGATCTGCCTGGCTCTTCCAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTCACACTGTGAGATATTTGTGGATCTGCCTGGCTCTTCCAGGA  491

seq1  CTCCCAGGTAATAGACTCAATGTCAAGCATCCATTCCACCAGCCTCAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTAATAGACTCAATGTCAAGCATCCATTCCACCAGCCTCAAGA  541

seq1  TCAAGGTTAGGGAGTCTTTCCTGGGGCCTGAGAGATAGGAAAGCGGGGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTAGGGAGTCTTTCCTGGGGCCTGAGAGATAGGAAAGCGGGGCA  591

seq1  CAAGGGCTGCTGTAATCACTGATGGTCCTGCCCACTTACACAGGTCTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTGCTGTAATCACTGATGGTCCTGCCCACTTACACAGGTCTTAC  641

seq1  TATGTGCCAGGCTCTTCACTTTTTTCCCCCTAACAACTGCATGAGGCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCCAGGCTCTTCACTTTTTTCCCCCTAACAACTGCATGAGGCAGA  691

seq1  CCCATTTAAAGTGTTGTTACTCTCAACGGTTCACAGATAGGAAAACTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAAAGTGTTGTTACTCTCAACGGTTCACAGATAGGAAAACTGAA  741

seq1  GAGCGATTTTTTCACACCTGCCCAGGATCACTAAGCCAGTGCATGGCAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATTTTTTCACACCTGCCCAGGATCACTAAGCCAGTGCATGGCAAA  791

seq1  GGCAGATGTGGTGGCCACCCCCACCCCCCAGGGCAGCATCAGAGCCGTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGTGGTGGCCACCCCCACCCCCCAGGGCAGCATCAGAGCCGTTC  841

seq1  TTTCCATTCCTTGGAGCATAGCAAGAGCTCTGGAAGGCAAACAGCTCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCCTTGGAGCATAGCAAGAGCTCTGGAAGGCAAACAGCTCACC  891

seq1  AAGTGTGAACATGAGTAGGGAGAATTCAGTTGAACATTTCCCAGGAGGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAACATGAGTAGGGAGAATTCAGTTGAACATTTCCCAGGAGGTG  941

seq1  ACTTCCAAGAGGCTCCTTTGCCCTTGTGCCAGTGTCTCACAGTCAAGATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAGAGGCTCCTTTGCCCTTGTGCCAGTGTCTCACAGTCAAGATC  991

seq1  ACTGCATGTCCCTTCCACCTCGTGTCAAAGGCACTGAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGTCCCTTCCACCTCGTGTCAAAGGCACTGAGAATTC  1034