BAC Information

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BAC

Clone NameB6Ng01-315A16
Chromosome4 (Build37)
Map Location 146,364,571 - 146,553,144
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315A16.bB6Ng01-315A16.g
ACCGA105799GA105800
length1,1021,155
definitionB6Ng01-315A16.b B6Ng01-315A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,552,025 - 146,553,144)(146,364,571 - 146,365,159)
sequence
gaattctctgatgaatattaagatgagatttttgggtaaagcatttgtca
cattcactacatttgtaaggtttctctcctgtatgaattctctgatgaat
attaagatgaaatttgtgggtaaagcatttgtcacattcactacatttat
aaattttctcttctgcatgaattccctgatggatactaagatcgatctga
tgggtaaagcatttgtcacttttactacttctgtaacgtttcttttcatg
ataaattctctgctgactttgaagtttgtctctctgggtaagatatttgt
caaatttactacatttgtaagggttcactccagtattatttcgtttcacc
atgactttatgtttagaaataaaagccttctcagattctgcatttccgtt
gtgttttttcttctgcatgtggattccctgattgagactaatggaagaaa
acaaagttaaactgtttacagagtcattgtatttgcaaacttttttattg
ttcctgggcttaagtcttttttggttcgaaaattgaagagcatcagaggt
gtgattagttttgtaaggtgtacattgggaggcttcaagtatcacattgc
taagtttgtcccatttagaagacttctcttgaatattcatgtgttcatgg
acaatgtactggctgtcttgatccaagaccttctcatactttccacatat
gcaatgattttctgaaaaaaagtggggaggggcaattagaggtgacatga
attacttatataaggagtaagtgattcaataatcagtgatctcatggatt
cgtactctcaagagaggtttttctcctttttttgaatcattacatgtatc
ctcaaagaacttcaaatatggtctatatcaaatgattggaaatgatagta
acctgctaaatttcagtttcaaattggacatcatacccacctcaatataa
taacccagaattgctcctgtgttaaggaaaaagaggaaaaatggaaagag
ctgaagttaagtcatccagagactgactaaagagatgcagatccagccac
attagactgagcagggggcctacatgagagtttatgagtacttgaagaag
ct
gaattcatacaggacagaaaccttacaaatgcagtgaatgtggcaaatgc
tttatcaaacaacccaatcttagtattcatcagagaattcatacaggaga
gaaaccttataaatgtagtgaatgtaacaaatgctttacccaaaattcct
atcttaatattcatcagagaattcatgcaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactacaaaaggcaatctgataattcatca
gagaattcatacaagagagaaaccttacaaatgcagtgaatgtgacaaat
gctttaccaaacaatccaaacttagtattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatc
caaacttagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttaatgaaaaaaacagtctgaaaattcat
cagagaattcatacaggagagagaccttacaaatgtagtgaatgtgacaa
atgcttttcccgaaaattctatcttggtattcatcagagaattcatacag
gaaagaaaccttacaaatgtagtgaatgtgacaaatgctttacccaaaaa
tcctgtcttaatattcatcagagaattcatgcaggagagaaaccttacaa
atgcagtgaatgtgacaaatgctttactacaaaaggcaatctgataattc
atcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgac
aaatgctttacccagaaatcccatcttagtattcatcagaaaattcatac
aggagagaaaccttacaaatagattgtatgtgacaaatacaatactcaca
atgtcagtcttagaaatcatcagttatttcatacagtagagaatctttat
aaatgaagtgaatgagacatcctttaccagataatatcatctcaaaattc
atagaagaatactagaagaaggacaacttttcaatatattgtagtatgga
tccttctttgctagtctagactgtaacagtgaatacttacagctagaact
taactcatgcatggatgaagaatagccttgacttcacttcaaggtcccga
gagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146552025_146553144
seq2: B6Ng01-315A16.b_50_1151 (reverse)

seq1  AGCTTCTTC-AGTCCTTCCCTTAACTCCTTCATGTAGCCCCCCTGCTCAG  49
      ||||||||| ||| ||  | | |||||  |||||||| ||||||||||||
seq2  AGCTTCTTCAAGTACT--CATAAACTC--TCATGTAGGCCCCCTGCTCAG  46

seq1  TCTAATGGTTGGCTGCAGAGATCTGCATCTCTTTGGTCCAGTCTCTGGAT  99
      |||||||  ||||||    ||||||||||||||| || ||||||||||||
seq2  TCTAATG--TGGCTG----GATCTGCATCTCTTTAGT-CAGTCTCTGGAT  89

seq1  GGCCTTACCTTCAGCCTCTTTTCCATTTTTTTCCCTCTTTTTCCTTAACA  149
       | |||| |||||| ||| |||||||||||   |||||||||||||||||
seq2  -GACTTAACTTCAG-CTC-TTTCCATTTTT---CCTCTTTTTCCTTAACA  133

seq1  CGGGAGCAATTCTGGGTTATTATATTTGAGGTGGGTATGATGTCCAATTT  199
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGGAGCAATTCTGGGTTATTATA-TTGAGGTGGGTATGATGTCCAATTT  182

seq1  GAAACTGAAATTTAGCAGGTTACTATCATTTCCAATCATTTGATATAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAATTTAGCAGGTTACTATCATTTCCAATCATTTGATATAGAC  232

seq1  CATATTTGAAGTTCTTTTGAGGATACATGTAATGATTCAAAAAAAGGAGA  299
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATATTTGAAGTTC-TTTGAGGATACATGTAATGATTCAAAAAAAGGAGA  281

seq1  AAAACCTCTCTTGAGAGTACGAATCCATGAGATCACTGATTATTGAATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCTCTTGAGAGTACGAATCCATGAGATCACTGATTATTGAATCA  331

seq1  CTTACTCCTTATATAAGTAATTCATGTCACCTCTAATTGCCCCTCCCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTACTCCTTATATAAGTAATTCATGTCACCTCTAATTGCCCCTCCCCAC  381

seq1  TTTTTTTCAGAAAATCATTGCATATGTGGAAAGTATGAGAAGGTCTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGAAAATCATTGCATATGTGGAAAGTATGAGAAGGTCTTGGA  431

seq1  TCAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAGCCAGTACATTGTCCATGAACACATGAATATTCAAGAGAAGT  481

seq1  CTTCTAAATGGGACAAACTTAGCAATGTGATACTTGAAGCCCCCCAATGT  549
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCTAAATGGGACAAACTTAGCAATGTGATACTTGAAGCCTCCCAATGT  531

seq1  ACACCTTACAAAACTAATCACACCTCTGATGCTCTTCAATTTTCGAACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTACAAAACTAATCACACCTCTGATGCTCTTCAATTTTCGAACCA  581

seq1  AAAAAGACTTAAGCCCAGGAACACTAAAGAAGTTTGCAAATACAATGACT  649
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  AAAAAGACTTAAGCCCAGGAACAATAAAAAAGTTTGCAAATACAATGACT  631

seq1  CTGTAAACAGTTTAACTTTGTTTTCTACCATTAGTCTCAATCAGGGAATC  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTAAACAGTTTAACTTTGTTTTCTTCCATTAGTCTCAATCAGGGAATC  681

seq1  CACATGCAGAAGAAAAAACACAACGGAAATGCAGAATCTGAGAAGGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAGAAGAAAAAACACAACGGAAATGCAGAATCTGAGAAGGCTTT  731

seq1  TATTTCTAAACATAAAGTCATGGTGAAACGAAATAATACTGGAGTGAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAACATAAAGTCATGGTGAAACGAAATAATACTGGAGTGAACC  781

seq1  CTTACAAATGTAGTAAATTTGACAAATATCTTACCCAGAGAGACAAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGTAGTAAATTTGACAAATATCTTACCCAGAGAGACAAACTT  831

seq1  CAAAGTCAGCAGAGAATTTATCATGAAAAGAAACATTACAGAAGTAGTAA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAGTCAGCAGAGAATTTATCATGAAAAGAAACGTTACAGAAGTAGTAA  881

seq1  AAGTGACAAATGCTTTACCCATCAGATCGATCTTAGTATCCATCAGGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACAAATGCTTTACCCATCAGATCGATCTTAGTATCCATCAGGGAA  931

seq1  TTCATGCAGAAGAGAAAATTTATAAATGTAGTGAATGTGACAAATGCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAGAAGAGAAAATTTATAAATGTAGTGAATGTGACAAATGCTTT  981

seq1  ACCCACAAATTTCATCTTAATATTCATCAGAGAATTCATACAGGAGAGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAAATTTCATCTTAATATTCATCAGAGAATTCATACAGGAGAGAA  1031

seq1  ACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAAAAATCTCATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAAATGTAGTGAATGTGACAAATGCTTTACCCAAAAATCTCATC  1081

seq1  TTAATATTCATCAGAGAATTC  1120
      |||||||||||||||||||||
seq2  TTAATATTCATCAGAGAATTC  1102

seq1: chr4_146364571_146365159
seq2: B6Ng01-315A16.g_646_1222

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTCGTGAATG  50
      |||||||||||||||||||||||| ||| ||||||||||||| |||||||
seq2  ATTCATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  50

seq1  TGACAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  100
      ||||||||||||| ||| ||||| |  ||||  |||||||||||||||||
seq2  TGACAAATGCTTTACCCAAAAATCCTGTCTTAATATTCATCAGAGAATTC  100

seq1  ATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACT  150
      || ||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  ATGCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACT  150

seq1  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAAAAGGCAATCTGATAATTCATCAGAGAATTCATACAGGAGAGAAACC  200

seq1  TCACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTA  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGTAGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTA  250

seq1  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCAGAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTA  300

seq1  TGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATT  350

seq1  TCATACAGTAGAGAATCTTTATAAATGAAGTGAACGAGACAATCCTTTAC  400
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TCATACAGTAGAGAATCTTTATAAATGAAGTGAATGAGAC-ATCCTTTAC  399

seq1  CAAGAT-ATATCATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAA  449
      | |||| |||||||||||||||||||   ||||||||   |||||   ||
seq2  C-AGATAATATCATCTCAAAATTCATAGAAGAATACTAGAAGAAGGACAA  448

seq1  CTTTTCAAATATATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCT  499
      |||||| ||||||||||| ||||| ||||||  ||||    ||| |  ||
seq2  CTTTTC-AATATATTGTA-GTATGGATCCTT--CTTT---GCTAGT--CT  489

seq1  AGACTGTAACAGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGT  549
      |||||||||||||||||||||||| ||||| ||||||||||||||| || 
seq2  AGACTGTAACAGTGAATACTTACA-GCTAG-AACTTAACTCATGCA-TGG  536

seq1  ATGAAGAAATATCTTTGACTTCATTTC-AGGT-CAGAGAGAA  589
      |||||| |||| | ||||||||| ||| |||| | |||||||
seq2  ATGAAG-AATAGCCTTGACTTCACTTCAAGGTCCCGAGAGAA  577