BAC Information

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BAC

Clone NameB6Ng01-315P04
Chromosome4 (Build37)
Map Location 26,193,013 - 26,293,520
singlet/doubletdoublet
Overlap geneManea
Upstream gene1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneBhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315P04.bB6Ng01-315P04.g
ACCGA106465GA106466
length1,180612
definitionB6Ng01-315P04.b B6Ng01-315P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,292,340 - 26,293,520)(26,193,013 - 26,193,624)
sequence
gaattcagttaatcaaaaatttctgaagagttcctatgtgcaagaaatta
ttctacgtgtcataaaatatacatataaatgaagaaacactttttctaca
gtaactcttttaatatagagacatgtacaattataattaaatgatcaaaa
cattgccatatagattattaataacaacagttaatctttataggttgaag
agaatggcaagctcctagaatacataaatttactctaatctaataaagga
taacagtaggatgccccaaaattaaaaaaataatcaaaagaaaccgataa
tcatgaagatatcttaatatatcttaaggtagtagaaagataggaaattt
ggataatatgggcaaaaagcatgctgagatgctgagtggcaaatgattct
actctcgagatgtatcctgcttgtcctactaagaaaggcaaaatatttta
atagtgctaataaatcctaaattgctcatggagacaatttatgtttttac
aaaggaaatcttatgcttactcaggaccaaaatgatgtatacacttgagt
tccttgcacttctttctcattcccagatttaaacgatacctcccataaat
atactatataaccccatacacagaagaaagtttctcaatataactttctt
gtaacctagattttttctatgttaaaaaacataaggattattcttatcca
tctcatatctcatatatcctcagagtttccaagaactaaaccaccaacca
aaaagtaagtacagatgggctggctgccagagcatgtgggagagccatct
tgtgtcccgggtccctcagacaccagtctgctcaggagagcctgcagact
gcagaagcaacatagcttctgggacaggccccagttctgggccttcatct
gaatccaggaagcagatctaagctccagacacctaccctcccttccccac
cagaggagggtgcccagccaggaagggcttcaagtgctagagccatcttg
tgtccgggttcatcagagacagtctgctcagtctactcctgctgagtgca
gagccacatagcttctggacaggcccctgatcagactttcatcttcagca
ggagccagagctgagctcagaacatctgtgtctctttactcagaagaaag
tagcttgcaaaagagtgtaccttgactact

gaattctttaacaaatatgtgcatgtgtgtgttaaaaatttttctcctaa
tttctgatttgtttgccattatttaataaggtctttcacagacaacaaca
atcaaaataaagtttatctcttgaatttttttcataaatagtgtttttag
ttttccatttgaaacttaactactaaagtcaagacctcctcaactttctc
atgtattttcttatgaaatgttttaaagtttaacttatatctaggatatt
tattgttatgatgttacaatcagtttgttgtatgtttttcttcctacctt
tcataatccttctctagattttcaggaccagggatgcatctggcaggaga
agagctattctctgctctgtctagaatgaatgattatggcaagactaaaa
ggataacatttccatttttacagtgaatctggtaacttccagggccaagc
ttcatcttgataatttggagccttagagttcccttatcagatacttgcta
tatctcagggtacaattacctctggatccctggggaaaaaaaatcaagca
tcctgaggtcttaaatttaccttggagaatgcatcatggggggtggagat
gtaatgtggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26292340_26293520
seq2: B6Ng01-315P04.b_48_1227 (reverse)

seq1  AGTAGTCAGGGCACTCTC---TCCAGGCCTCCTCTCCTCTGAAGGGAAAG  47
      |||||||| || || |||   | || | || || || |||||  | ||||
seq2  AGTAGTCAAGGTACACTCTTTTGCAAG-CTACTTTCTTCTGA--GTAAAG  47

seq1  AG-CACAGATGTCTGGAGCTCAGCTCTGCCTCCTGGCTGAAGATGAAGGT  96
      || |||||||||   ||||||||||||| ||||| |||||||||||| ||
seq2  AGACACAGATGTTCTGAGCTCAGCTCTGGCTCCT-GCTGAAGATGAAAGT  96

seq1  CTGAACAGGGGCCTGTCCCAGAAGCTATGTTGCTTCTGCACTCAGCAGGA  146
      |||| ||||||||||| ||||||||||||| || ||||||||||||||||
seq2  CTGATCAGGGGCCTGT-CCAGAAGCTATGTGGC-TCTGCACTCAGCAGGA  144

seq1  GTAGACCTGAGCAGACTGGTCTCTGATGGACCCGGACACAAGATGGCTCT  196
      ||||| ||||||||||| |||||||||| |||||||||||||||||||||
seq2  GTAGA-CTGAGCAGACT-GTCTCTGATGAACCCGGACACAAGATGGCTCT  192

seq1  AGCACTTG-AGCCCTTCCTGGCTGGCACCCCTCCTCTGGTGGGGAA-GGA  244
      |||||||| ||||||||||||||||   |||||||||||||||||| |||
seq2  AGCACTTGAAGCCCTTCCTGGCTGGGCACCCTCCTCTGGTGGGGAAGGGA  242

seq1  GGGTAGGTGTCTGGAGCTTAGATCTGCTTCCTGGATTCAGATGAAGG-CC  293
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGTAGGTGTCTGGAGCTTAGATCTGCTTCCTGGATTCAGATGAAGGCCC  292

seq1  AGAACTGGGGCCTGTCCCAGAAGCTATGTTGCTTCTGCAGTCTGCAGGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGGGCCTGTCCCAGAAGCTATGTTGCTTCTGCAGTCTGCAGGCT  342

seq1  CTCCTGAGCAGACTGGTGTCTGAGGGACCCGGGACACAAGATGGCTCTCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGCAGACTGGTGTCTGAGGGACCCGGGACACAAGATGGCTCTCC  392

seq1  CACATGCTCTGGCAGCCAGCCCATCTGTACTTACTTTTTGGTTGGTGGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTCTGGCAGCCAGCCCATCTGTACTTACTTTTTGGTTGGTGGTT  442

seq1  TAGTTCTTGGAAACTCTGAGGATATATGAGATATGAGATGGATAAGAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTGGAAACTCTGAGGATATATGAGATATGAGATGGATAAGAATA  492

seq1  ATCCTTATGTTTTTTAACATAGAAAAAATCTAGGTTACAAGAAAGTTATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATGTTTTTTAACATAGAAAAAATCTAGGTTACAAGAAAGTTATA  542

seq1  TTGAGAAACTTTCTTCTGTGTATGGGGTTATATAGTATATTTATGGGAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAACTTTCTTCTGTGTATGGGGTTATATAGTATATTTATGGGAGG  592

seq1  TATCGTTTAAATCTGGGAATGAGAAAGAAGTGCAAGGAACTCAAGTGTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTTTAAATCTGGGAATGAGAAAGAAGTGCAAGGAACTCAAGTGTAT  642

seq1  ACATCATTTTGGTCCTGAGTAAGCATAAGATTTCCTTTGTAAAAACATAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTTTGGTCCTGAGTAAGCATAAGATTTCCTTTGTAAAAACATAA  692

seq1  ATTGTCTCCATGAGCAATTTAGGATTTATTAGCACTATTAAAATATTTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCATGAGCAATTTAGGATTTATTAGCACTATTAAAATATTTTG  742

seq1  CCTTTCTTAGTAGGACAAGCAGGATACATCTCGAGAGTAGAATCATTTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTAGTAGGACAAGCAGGATACATCTCGAGAGTAGAATCATTTGC  792

seq1  CACTCAGCATCTCAGCATGCTTTTTGCCCATATTATCCAAATTTCCTATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCATCTCAGCATGCTTTTTGCCCATATTATCCAAATTTCCTATC  842

seq1  TTTCTACTACCTTAAGATATATTAAGATATCTTCATGATTATCGGTTTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTACCTTAAGATATATTAAGATATCTTCATGATTATCGGTTTCT  892

seq1  TTTGATTATTTTTTTAATTTTGGGGCATCCTACTGTTATCCTTTATTAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATTTTTTTAATTTTGGGGCATCCTACTGTTATCCTTTATTAGA  942

seq1  TTAGAGTAAATTTATGTATTCTAGGAGCTTGCCATTCTCTTCAACCTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTAAATTTATGTATTCTAGGAGCTTGCCATTCTCTTCAACCTATA  992

seq1  AAGATTAACTGTTGTTATTAATAATCTATATGGCAATGTTTTGATCATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAACTGTTGTTATTAATAATCTATATGGCAATGTTTTGATCATTT  1042

seq1  AATTATAATTGTACATGTCTCTATATTAAAAGAGTTACTGTAGAAAAAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAATTGTACATGTCTCTATATTAAAAGAGTTACTGTAGAAAAAGT  1092

seq1  GTTTCTTCATTTATATGTATATTTTATGACACGTAGAATAATTTCTTGCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCATTTATATGTATATTTTATGACACGTAGAATAATTTCTTGCA  1142

seq1  CATAGGAACTCTTCAGAAATTTTTGATTAACTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAACTCTTCAGAAATTTTTGATTAACTGAATTC  1180


seq1: chr4_26193013_26193624
seq2: B6Ng01-315P04.g_68_679

seq1  GAATTCTTTAACAAATATGTGCATGTGTGTGTTAAAAATTTTTCTCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACAAATATGTGCATGTGTGTGTTAAAAATTTTTCTCCTAA  50

seq1  TTTCTGATTTGTTTGCCATTATTTAATAAGGTCTTTCACAGACAACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTTGTTTGCCATTATTTAATAAGGTCTTTCACAGACAACAACA  100

seq1  ATCAAAATAAAGTTTATCTCTTGAATTTTTTTCATAAATAGTGTTTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATAAAGTTTATCTCTTGAATTTTTTTCATAAATAGTGTTTTTAG  150

seq1  TTTTCCATTTGAAACTTAACTACTAAAGTCAAGACCTCCTCAACTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTGAAACTTAACTACTAAAGTCAAGACCTCCTCAACTTTCTC  200

seq1  ATGTATTTTCTTATGAAATGTTTTAAAGTTTAACTTATATCTAGGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTCTTATGAAATGTTTTAAAGTTTAACTTATATCTAGGATATT  250

seq1  TATTGTTATGATGTTACAATCAGTTTGTTGTATGTTTTTCTTCCTACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTATGATGTTACAATCAGTTTGTTGTATGTTTTTCTTCCTACCTT  300

seq1  TCATAATCCTTCTCTAGATTTTCAGGACCAGGGATGCATCTGGCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCCTTCTCTAGATTTTCAGGACCAGGGATGCATCTGGCAGGAGA  350

seq1  AGAGCTATTCTCTGCTCTGTCTAGAATGAATGATTATGGCAAGACTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATTCTCTGCTCTGTCTAGAATGAATGATTATGGCAAGACTAAAA  400

seq1  GGATAACATTTCCATTTTTACAGTGAATCTGGTAACTTCCAGGGCCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATTTCCATTTTTACAGTGAATCTGGTAACTTCCAGGGCCAAGC  450

seq1  TTCATCTTGATAATTTGGAGCCTTAGAGTTCCCTTATCAGATACTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGATAATTTGGAGCCTTAGAGTTCCCTTATCAGATACTTGCTA  500

seq1  TATCTCAGGGTACAATTACCTCTGGATCCCTGGGGAAAAAAAATCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGGGTACAATTACCTCTGGATCCCTGGGGAAAAAAAATCAAGCA  550

seq1  TCCTGAGGTCTTAAATTTACCTTGGAGAATGCATCATGGGGGGTGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGTCTTAAATTTACCTTGGAGAATGCATCATGGGGGGTGGAGAT  600

seq1  GTAATGTGGGGT  612
      ||||||||||||
seq2  GTAATGTGGGGT  612


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