BAC Information

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BAC

Clone NameB6Ng01-317B14
Chromosome4 (Build37)
Map Location 76,103,664 - 76,250,718
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317B14.bB6Ng01-317B14.g
ACCGA107328GA107329
length1,2071,196
definitionB6Ng01-317B14.b B6Ng01-317B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,103,664 - 76,104,890)(76,249,495 - 76,250,718)
sequence
gaattcaatgggtcagttcctcacaagtgttgtagaaccatccaatgtcc
ttaggtggaatggtacctgaacccattctaaatttcaagtccttactacc
aatgtcttagcctctagtactgtctacatgaaactgcattttctttttcc
aacagttacacaataaatgcatcaccatgcctaaaggaacctctcacctt
atgcattgtttgactttctgattctattgcccaaatataaacttccttta
ccatctttagctactgaaacttgtttttaaaaaaaattgaacaccccgtt
tacacaatactcttctatggctagatttgtttatatccatctatttacta
caatactaaaatacaataaatacaaacatgacctggatggagtcagtggg
aatttatgccaattgaaacctaatcatctcttgcagagccactgtgttta
atcctcccttgaatgttctcatgccaggagactgggctgggaagagaaca
gaggaatttaaggcatctgagtgaaagctaatgtgaggagcaacagactg
ccttaacagtttctttcagtttgtggtgctggagactcaggatctcaggc
atggtaagcaagcagccagcgagctgcacattcctaggcatgccagcttc
ttagtcttaattcagcttagagaagaaccaacatgggactctccacagca
tggggcctggaaaagcacagaaactcaccctggggaacagatgtgcttcc
cccacaaaaggactccaggggaacacacctcagagagggctctcctgagt
cccaggctccagacaaaatattccctaaaagagatggacgtaagaagaga
gaaaggactcttgaattatttctcgttttttatctcagtgcttatgccct
gcccaccaaaacaactcccaaaggaaacttcattatagattaccaagctg
ttcagttttgcccgttctaaaggttagaaagatacagaattaaagcagca
ctgaaagctcttccgttctctgtgatcaattctcctgaacattcagtcac
atgtgcttcactagctttctttactctttctccccagtctctatgtctcc
ttcacagcaaccctatcctctagtgtgtttcctcagactgaaactatacc
tgatttaggtagtccttgtgtgactaccaaagcgaatgttctaggggtgt
taatgga

gaattcagtccccaaaactcacatggtagggagaaaagcaaccccacagt
ttgtcaccatggaaactgtgacatacatacacatgcaaataaataagtat
ttcaaaaaacttctgtaatgtcacattcagctatgattgaggataaatga
aatactagaaacacaaagattacccaaattaaatagaaagttgaggtaag
cttttataattttagttctgagtcatgtttttatgagggaacaatatgaa
tattgatatctaaaatagagtgaatatgacagtatgtaattcatgcattg
cctatttattttattcacataaaatattgctcagaaacacattttgaaga
attgagagagaatgtgttagggaaagtggttagataaagtatcttcgaca
tcactttaggatagagttctctacggtgactctggatggaaaagcttaga
caggtgccttgtgttaatggatgaaagttagggtgagttgcatttctata
cacaccaaaggcaatgatcagatttcacacttagaaatacagatcaaagt
gatgagtcctggtgtgacaggtaaagaactcgaatagttcctatattccc
tccatcacaggggacctgtgtattacttcctatcactgtacatgaggtag
aagcactaagtaggacaaatggtgattaatttgaagggcatgactcaata
aaatactacaagaccatagtttcatactaacaaaccagatttggcaaaat
aatatttaaaaaaattactcagtaacatccaaactaccatcatcaaaaat
tcctcttctcccttctgatccatttattctgttttaacccatgtcacatt
catagcatttaataaatcttttgagatgtgttctttgaattgatgaagta
tgtattagtcaggttctctagagtcacagaacttatggatagtctctaga
tagtaaaggaatttattgatgacttacagtcgcagcccatttcccacaat
gttcagtcgcagctatgatggaagtccaggatctagcagtactcagtctt
cacgcagcagcggcgaagagcagacagagctagactccttcttccatgtc
ttatttgttctcagcagaggttagccagattaggtgtgtcaccacacctt
atccaatgaggcgtagccgaaatatagggcgtgttctctttaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76103664_76104890
seq2: B6Ng01-317B14.b_46_1252

seq1  GAATTCAATGGGTCAGTTCCTCACAAGTGTTGTAGAACCATCCAATGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGTCAGTTCCTCACAAGTGTTGTAGAACCATCCAATGTCC  50

seq1  TTAGGTGGAATGGTACCTGAACCCATTCTAAATTTCAAGTCCTTACTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGAATGGTACCTGAACCCATTCTAAATTTCAAGTCCTTACTACC  100

seq1  AATGTCTTAGCCTCTAGTACTGTCTACATGAAACTGCATTTTCTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAGCCTCTAGTACTGTCTACATGAAACTGCATTTTCTTTTTCC  150

seq1  AACAGTTACACAATAAATGCATCACCATGCCTAAAGGAACCTCTCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTACACAATAAATGCATCACCATGCCTAAAGGAACCTCTCACCTT  200

seq1  ATGCATTGTTTGACTTTCTGATTCTATTGCCCAAATATAAACTTCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGTTTGACTTTCTGATTCTATTGCCCAAATATAAACTTCCTTTA  250

seq1  CCATCTTTAGCTACTGAAACTTGTTTTTAAAAAAAATTGAACACCCCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTAGCTACTGAAACTTGTTTTTAAAAAAAATTGAACACCCCGTT  300

seq1  TACACAATACTCTTCTATGGCTAGATTTGTTTATATCCATCTATTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATACTCTTCTATGGCTAGATTTGTTTATATCCATCTATTTACTA  350

seq1  CAATACTAAAATACAATAAATACAAACATGACCTGGATGGAGTCAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTAAAATACAATAAATACAAACATGACCTGGATGGAGTCAGTGGG  400

seq1  AATTTATGCCAATTGAAACCTAATCATCTCTTGCAGAGCCACTGTGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCCAATTGAAACCTAATCATCTCTTGCAGAGCCACTGTGTTTA  450

seq1  ATCCTCCCTTGAATGTTCTCATGCCAGGAGACTGGGCTGGGAAGAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCTTGAATGTTCTCATGCCAGGAGACTGGGCTGGGAAGAGAACA  500

seq1  GAGGAATTTAAGGCATCTGAGTGAAAGCTAATGTGAGGAGCAACAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTAAGGCATCTGAGTGAAAGCTAATGTGAGGAGCAACAGACTG  550

seq1  CCTTAACAGTTTCTTTCAGTTTGTGGTGCTGGAGACTCAGGATCTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACAGTTTCTTTCAGTTTGTGGTGCTGGAGACTCAGGATCTCAGGC  600

seq1  ATGGTAAGCAAGCAGCCAGCGAGCTGCACATTCCTAGGCATGCCAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAGCAAGCAGCCAGCGAGCTGCACATTCCTAGGCATGCCAGCTTC  650

seq1  TTAGTCTTAATTCAGCTTAGAGAAGAACCAACATGGGACTCTCCACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTAATTCAGCTTAGAGAAGAACCAACATGGGACTCTCCACAGCA  700

seq1  TGGGGCCTGGAAAAGCACAGAAACTCACCCTGGGGAACAGATGTGCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGGAAAAGCACAGAAACTCACCCTGGGGAACAGATGTGCTTCC  750

seq1  CCCACAAAAGGACTCCAGGGGAACACACCTCAGAGAGGGCTCTCCTGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAAGGACTCCAGGGGAACACACCTCAGAGAGGGCTCTCCTGAGT  800

seq1  CCCAGGCTCCAGACAAAATATTCCCTAAAAGAGATGGACGTAAGAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTCCAGACAAAATATTCCCTAAAAGAGATGGACGTAAGAAGAGA  850

seq1  G-AAGGACTCTTGAATTATTTCTCGTTTTTTATCTCAGTGCTTATGCCCT  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTCTTGAATTATTTCTCGTTTTTTATCTCAGTGCTTATGCCCT  900

seq1  GCCCACCAAAACAACT-CCAAAGGAAACTTCATTATAAGATTACCAAGCT  948
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GCCCACCAAAACAACTCCCAAAGGAAACTTCATTAT-AGATTACCAAGCT  949

seq1  GTTCAGTTTTGCCCGTTCTAAAGGTTAGAAAGATACAAGAAATTAAAGCA  998
      |||||||||||||||||||||||||||||||||||||   ||||||||| 
seq2  GTTCAGTTTTGCCCGTTCTAAAGGTTAGAAAGATACA--GAATTAAAGC-  996

seq1  AGCACTGAAAGCTCTTCCGGTTTCTCTGTGATCAATTCTTCCTGAACATT  1048
      |||||||||||||||||||  ||||||||||||||||| |||||||||||
seq2  AGCACTGAAAGCTCTTCCG--TTCTCTGTGATCAATTC-TCCTGAACATT  1043

seq1  CAAGTCACATGTGCCTTTCACTAGCTTTCTTTACCTCTTTCTCCCCCAGT  1098
      | ||||||||||||  ||||||||||||||||| |||||||| |||||||
seq2  C-AGTCACATGTGC--TTCACTAGCTTTCTTTA-CTCTTTCT-CCCCAGT  1088

seq1  CTCTATGTCTCTTCCACAGGCCAACCCCTATCCTCTAGTGTGTT--CTCA  1146
      ||||||||||| | |||||  ||| |||||||||||||||||||  ||||
seq2  CTCTATGTCTCCTTCACAG--CAA-CCCTATCCTCTAGTGTGTTTCCTCA  1135

seq1  GACTGAAAACCTATAACTGGTTTAGTTAGTCCTTTGTGTGACCCTTACAC  1196
      ||||||||  ||||| ||| ||||| |||||| |||||||||   ||| |
seq2  GACTGAAA--CTATACCTGATTTAGGTAGTCC-TTGTGTGAC---TAC-C  1178

seq1  AGAGGCAGAATGTCCTAAGGGTGTTAATGGA  1227
      | ||   |||||| ||| |||||||||||||
seq2  AAAG--CGAATGTTCTAGGGGTGTTAATGGA  1207


seq1: chr4_76249495_76250718
seq2: B6Ng01-317B14.g_70_1265 (reverse)

seq1  AGTTTAA--GGAACACGCCTTTAATCTGGGCTACGCCTTTCATCTGGGAT  48
      |||||||   ||||||||| |  || | |||||||||  |||  | ||||
seq2  AGTTTAAAGAGAACACGCCCTATATTTCGGCTACGCC--TCA--TTGGAT  46

seq1  TAAAGGTGTGGTGGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGA  98
        |||||||||||  |||||||  |||||| ||||| ||| |||||| ||
seq2  --AAGGTGTGGTG--ACACACC--TAATCT-GGCTA-ACC-TCTGCT-GA  86

seq1  GACAATATAAGGACATTGGAAGAAGGGAGTTCTAGCTCTTGTTCTTGCTC  148
      ||  | |||| |||| |||||||| |||| |||||||| |||   |||| 
seq2  GAACAAATAA-GACA-TGGAAGAA-GGAG-TCTAGCTC-TGT--CTGCT-  128

seq1  CTTCGCCCGCTTGCTGCGTG-AGACTGAGTAACTGCTAGATCCTTGGACT  197
      ||||| |||| ||||||||| ||||||||| |||||||||||| ||||||
seq2  CTTCG-CCGC-TGCTGCGTGAAGACTGAGT-ACTGCTAGATCC-TGGACT  174

seq1  TCCATTCATAGCTGCGACTGAACCATTGTTGGGAATTGGGCTGCCGACTG  247
      |||| ||||||||||||||||| ||||| |||||| ||||||| ||||||
seq2  TCCA-TCATAGCTGCGACTGAA-CATTG-TGGGAAATGGGCTG-CGACTG  220

seq1  TAAGTCATCAATAAATTCCTTTACTATCTAGAGACTATCCATAAGTTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATCAATAAATTCCTTTACTATCTAGAGACTATCCATAAGTTCTG  270

seq1  TGACTCTAGAGAACCCTGACTAATACATACTTCATCAATTCAAAGAACAC  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACTCTAGAGAA-CCTGACTAATACATACTTCATCAATTCAAAGAACAC  319

seq1  ATCTCAAAAGATTTATTAAATGCTATGAATGTGACATGGGTTAAAACAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAAGATTTATTAAATGCTATGAATGTGACATGGGTTAAAACAGA  369

seq1  ATAAATGGATCAGAAGGGAGAAGAGGAATTTTTGATGATGGTAGTTTGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGATCAGAAGGGAGAAGAGGAATTTTTGATGATGGTAGTTTGGA  419

seq1  TGTTACTGAGTAATTTTTTTAAATATTATTTTGCCAAATCTGGTTTGTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGAGTAATTTTTTTAAATATTATTTTGCCAAATCTGGTTTGTTA  469

seq1  GTATGAAACTATGGTCTTGTAGTATTTTATTGAGTCATGCCCTTCAAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAACTATGGTCTTGTAGTATTTTATTGAGTCATGCCCTTCAAATT  519

seq1  AATCACCATTTGTCCTACTTAGTGCTTCTACCTCATGTACAGTGATAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCATTTGTCCTACTTAGTGCTTCTACCTCATGTACAGTGATAGGA  569

seq1  AGTAATACACAGGTCCCCTGTGATGGAGGGAATATAGGAACTATTCGAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATACACAGGTCCCCTGTGATGGAGGGAATATAGGAACTATTCGAGT  619

seq1  TCTTTACCTGTCACACCAGGACTCATCACTTTGATCTGTATTTCTAAGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCTGTCACACCAGGACTCATCACTTTGATCTGTATTTCTAAGTG  669

seq1  TGAAATCTGATCATTGCCTTTGGTGTGTATAGAAATGCAACTCACCCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTGATCATTGCCTTTGGTGTGTATAGAAATGCAACTCACCCTAA  719

seq1  CTTTCATCCATTAACACAAGGCACCTGTCTAAGCTTTTCCATCCAGAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCCATTAACACAAGGCACCTGTCTAAGCTTTTCCATCCAGAGTC  769

seq1  ACCGTAGAGAACTCTATCCTAAAGTGATGTCGAAGATACTTTATCTAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTAGAGAACTCTATCCTAAAGTGATGTCGAAGATACTTTATCTAACC  819

seq1  ACTTTCCCTAACACATTCTCTCTCAATTCTTCAAAATGTGTTTCTGAGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCTAACACATTCTCTCTCAATTCTTCAAAATGTGTTTCTGAGCA  869

seq1  ATATTTTATGTGAATAAAATAAATAGGCAATGCATGAATTACATACTGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATGTGAATAAAATAAATAGGCAATGCATGAATTACATACTGTC  919

seq1  ATATTCACTCTATTTTAGATATCAATATTCATATTGTTCCCTCATAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACTCTATTTTAGATATCAATATTCATATTGTTCCCTCATAAAAA  969

seq1  CATGACTCAGAACTAAAATTATAAAAGCTTACCTCAACTTTCTATTTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCAGAACTAAAATTATAAAAGCTTACCTCAACTTTCTATTTAAT  1019

seq1  TTGGGTAATCTTTGTGTTTCTAGTATTTCATTTATCCTCAATCATAGCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAATCTTTGTGTTTCTAGTATTTCATTTATCCTCAATCATAGCTG  1069

seq1  AATGTGACATTACAGAAGTTTTTTGAAATACTTATTTATTTGCATGTGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACATTACAGAAGTTTTTTGAAATACTTATTTATTTGCATGTGTA  1119

seq1  TGTATGTCACAGTTTCCATGGTGACAAACTGTGGGGTTGCTTTTCTCCCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCACAGTTTCCATGGTGACAAACTGTGGGGTTGCTTTTCTCCCT  1169

seq1  ACCATGTGAGTTTTGGGGACTGAATTC  1224
      |||||||||||||||||||||||||||
seq2  ACCATGTGAGTTTTGGGGACTGAATTC  1196


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