BAC Information

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BAC

Clone NameB6Ng01-317C23
Chromosome4 (Build37)
Map Location 145,479,038 - 145,479,577
singlet/doubletsinglet
Overlap genenone
Upstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C23.bB6Ng01-317C23.g
ACCGA107394GA107395
length1,2281,140
definitionB6Ng01-317C23.b B6Ng01-317C23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgcattctcagactaagtttgtgggaaaatcatttgtca
cattgactacatttgtaaggcttctttaatgtatgatttctgtgattaaa
aacaagataggatttctgggcaaaacatttgtcacattcaatacatctgt
aagaattctcccctgtatgagttctctgatgccatctgactttctcagta
aagctttgtcacattcactacatttgtaaggtttctctcctgtatgaatt
ctctgatgaattatcatactgcatttttgaataaaacatttgtcacattc
actacatttgtaaggtttctctcctgtatgaaatctctgatgaatcctca
aactggattttttagtaaagcatttgtcacattcactacatttgtaaggt
ttctctcctgtatgaattctctgatgaattctcagacagccattttcagt
aaaggatttgtcacattcattacatttgtaaggtttctctcctgtatgaa
ttatctgatgccttctcagactgtgtttgtcagtaaagcatttgtcgcat
tcattgcatttgtaaggttctcttctgaatgaattttctgatgaatacta
agatggcattgttgggtaaagcatttgtcacattcactgcatttgtacag
tttctctcctgtatgaattctctgatgaatactaagatgtgattttccgg
taaagcatttgtcacattcactgcatttataaggtttctctcctgcatga
attctatgatgaactctcagagagcctttgtgagtaaagcatttgtcaca
ttcactacatttgtaagatttctctcctgcatgaattctatgatgaactc
tcagatagcctttgtcagtaaagcatttgtcgcattcactacatttgtaa
ggttctctcctgcatgaattctatgatgaactctaagactgcttttgtca
gtaaagcattgtcacactcactgcattggtacggtttctctcctgtatga
attctctgatgaactctcagactgcctttgtcagtaaagcatttgtcgcc
attcactacatttgtagtttctctcctgaatgaattcctacgaatgaaaa
actaagaatggattgtggtaaggcattttgtccacactccactgcattgt
tacgttccctcttatggatcctgatgacctctcgactgcattgcagagta
taagacaactgtgtcgccagtatattgt
gaattcatgcagttgaatccttctcaacagtctgttttacgggaaccttt
attaccgttacccgcagttctggttctggaatgagggatcttccttgcac
cggttaactcccgtcccgagttttcttgtattttctcgtcccggattttt
tctcgtcccggattttttctcgtcccggatttcagcaccaactcttacac
gcgttctcacgaccggccaggaaagaacacaacaaaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaggagcgcaaaaccccaa
gccccaaaaacgaaagcgcccttctaatcgaaagcgaaaccccccgtccc
tatttaggagagttatccttcgcttaggacgcatcactccctgattggct
gcagcccatggccgagctgacgtcacgggaaaggcagagtacaagtagtg
gtaaaatacccttggcacatgcgcagattatttgtttaccacttagaaca
caggatgtcagcgccatcttgtgacggcgaatgtgggggcggctcccaac
aagacagggtttctctgtatagccctggctgtcctggaactcactttgta
gaccaggctggcctcgaattcagaaatccgcctgtctctgcctcccaagt
gctgggattaaaggcatacaccaccaccgctccgctcaattcttgatctt
agagcatgagacattcgagttctctttaggaaatatcccctggtgcctaa
tgcgttcaaagctttttcccactttctcttcttttaggttgtgtgtattt
gattttatgttcaggtccttgattaacttggacttgggatttgtgcaagg
tgacaaatatgggtctatttccatttttctacatacagacagccaaatta
gactagcaccatttattgagatgcttccttttttccattgtatatttttg
ggcttctttgtcaaaatcacgtgtgtgtagtatgtggtttttattttctg
gttctcaattccattcattgatcaacctgtctgcctggtgtacccaatac
ccatggcttgttttttatcacttatagctgtggaaaaacagaattagact
gtgttttccttttcagggaaatagccaattgccatttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145479038_145479577
seq2: B6Ng01-317C23.g_656_1207

seq1  ACTCACTTTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCGCCTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTGTAGACCAGGCTGGCCTCGAATTCAGAAATCCGCCTGTCTC  50

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCATACACCACCACCGCTCCGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCATACACCACCACCGCTCCGCTCA  100

seq1  ATTCTTGATCTTAGAGCATGAGACATTCGAGTTCTGTTTAGGAAATATCC  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTCTTGATCTTAGAGCATGAGACATTCGAGTTCTCTTTAGGAAATATCC  150

seq1  CCTGGTGCCTAATGCGTTCAAGGCTTTTTCCCACTTTCTCTTCTTTTAGG  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTGGTGCCTAATGCGTTCAAAGCTTTTTCCCACTTTCTCTTCTTTTAGG  200

seq1  TTGTGTGTATTTGATTTTATGTTCAGGTCCTTGATTAACTTGGACTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATTTGATTTTATGTTCAGGTCCTTGATTAACTTGGACTTGGG  250

seq1  CTTTGTGCAAGGTGACAAATATGGGTCTATTTCCATTTTTCTACATACAG  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCAAGGTGACAAATATGGGTCTATTTCCATTTTTCTACATACAG  300

seq1  ACAGCCAAATTAGACTAGCACCATTTATTGAAGATGCTTCCTTTTTTCCA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGCCAAATTAGACTAGCACCATTTATTG-AGATGCTTCCTTTTTTCCA  349

seq1  TTGTATATTTTT-GGCTTCTTTGTCAAAAATCACGTGTGTGTAAGTATGT  399
      |||||||||||| |||||||||||| |||||||||||||||| |||||||
seq2  TTGTATATTTTTGGGCTTCTTTGTC-AAAATCACGTGTGTGT-AGTATGT  397

seq1  GGTTTT--ATTTCTGGTTCTTCAATTCCATTTCATTGATCAACTTGTCTG  447
      ||||||   |||||||||| ||||||||| ||||||||||||| ||||||
seq2  GGTTTTTATTTTCTGGTTC-TCAATTCCA-TTCATTGATCAACCTGTCTG  445

seq1  CCT-GTGTA-CCAATA-CCAT-GCT--GTTTTTATCAC-TATAGCTGTG-  489
      ||| ||||| |||||| |||| |||   |||||||||| |||||||||| 
seq2  CCTGGTGTACCCAATACCCATGGCTTGTTTTTTATCACTTATAGCTGTGG  495

seq1  -AAGACAGAATTAGACTGTGTTT--CCTTTCAGG--AATAG-CAAATGCC  533
       || |||||||||||||||||||  | |||||||  ||||| ||| ||||
seq2  AAAAACAGAATTAGACTGTGTTTTCCTTTTCAGGGAAATAGCCAATTGCC  545

seq1  ATTTACC  540
      |||||||
seq2  ATTTACC  552