BAC Information

Click to search

BAC

Clone NameB6Ng01-317F19
Chromosome12 (Build37)4 (Build37)
Map Location 28,101,502 - 28,101,80624,891,897 - 24,892,860
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRsad2, Tyki, LOC668731, 1700020D12Rik, Sox11
Downstream geneLOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317F19.bB6Ng01-317F19.g
ACCGA107527GA107528
length713970
definitionB6Ng01-317F19.b B6Ng01-317F19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,101,502 - 28,101,806)(24,891,897 - 24,892,860)
sequence
gaattctttgtttagctctgtaccccatttttaatagtgttattttgttc
tctggagtctaacatcttgacttctttatatatatattggatattagccc
tctatcaaatgtaggatcgataaagatctttccccaaactgttggtttct
gttttggcctattgacagtttccttgtcttacagaagccattcaattttt
atgaggttccatttgtcaattcttgatcttagagcataagctattggtgt
tctgttcaggaaatcttcccctgtacccatatgctcgaggctcttcccca
ctttcttttttatttatgtgtatctggctttatgtggaggtccttgatcc
atttggacttgagctttgtaaaaaggagataggaatggatagatttgcat
tcttctgcatgatactgccagttgaaccagcaccatttgttgaatatgct
gtcttttttccactggatggttttagctcctttgccaaagatcaagtgac
cacagatgtgtgggttcatttctgggtcttcaattctatttcattgatcc
atctgcctgttattgtaccaaaaccatgcaattttaaacactattgctct
gtagtacagcttgaggtctgggatgctaattctcccagaagtttttattg
ttgagaatagttttcactatcctgagttttgttttgttttgttttttgtt
tttgttttgtttt
gaattcctatagactgttatgcaggagaatcgatgacctaaaaatagaag
gcccaacaatgagtacaggttggtgtatttgctggcaaaggtgccatagg
ttaaggggaaagttaaataaaatgtcaagcacagggttccattggtccaa
tgccccttggcctgctcacttgctgaagacatcacatgttgaggaggatg
gaagtgcattcgaagttacagttctagctcctgcttagagaaaacagaat
ccgtacaagggaaacacaggcaaatgtggagagaaactgagtctttaagt
ccagcagaaaaaaatttaaaaaggaaatttaaagattttttttttttttg
ggggtagggggtgactttctgcctacctgggctcggatttacttgttcta
aattactttcctcaggggaagaatttactaatgattctttgcattttgtc
ttgtctaaaatacccatccaacgcttgtaacttttgacgaattcttatgt
ttgttgcatacccctccacgtatcgtattgtgctcccatgttcatatatt
tttaaataatttgaagcttcttctgatatttcttctatggcccatatgct
agttggaagtgtgctcttaatgacgccttctattgttgatttactgctaa
attagagtcacctacatgactgtaaacgccagtttaaagcctttttactt
tacgtattttgctgatctttgttttaggtgcacaaacattagagaatgtt
gtacactatcttaaaatcttgacttgatcactgcataatgttctttgtgc
cttgtaacttcccacactctgaaatctgttttttctggagctaatatagg
gtaggtttttagttcgaatgaaggtatgtaaactcaaggtaatacaacag
cagctttggatgcctggtctgctgtggagtcaggaaaactgcttaatgct
ccgagccttccggggccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28101502_28101806
seq2: B6Ng01-317F19.b_241_756

seq1  TTCATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCGCAAGCCATTGC  50
      || ||||||| ||||||||||||||||||||||| |||  |||| |||| 
seq2  TTTATGAGGTTCCATTTGTCAATTCTTGATCTTAGAGCATAAGCTATTGG  50

seq1  TGTTCCATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCC  100
      |||||  |||||||| | ||||||||| |||||||  || ||||| ||||
seq2  TGTTCTGTTCAGGAAATCTTCCCCTGTACCCATATGCTCGAGGCTCTTCC  100

seq1  CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAT------GTTC  144
      |||||||||  | ||    |||  |||| ||||| |||||      || |
seq2  CCACTTTCTTTTTTA----TTTATGTGTATCTGGCTTTATGTGGAGGTCC  146

seq1  TT-----------ACTTGATTATCTTGTA------------TCATAGTTA  171
      ||           ||||||     |||||              || | ||
seq2  TTGATCCATTTGGACTTGA--GCTTTGTAAAAAGGAGATAGGAATGGATA  194

seq1  GATAACCAAGCTCTGGTGTGATCTCAGCTAGAATATTTATGAAAAGTTGT  221
      |||   ||  ||   |  ||||  | || ||   |   |  |  | ||||
seq2  GATTTGCATTCTTCTGCATGAT-ACTGCCAGTTGAACCAGCACCATTTGT  243

seq1  TGA------TTTCATGTTTAAAGCTGAA--ATTAAAG---GTTTGTTAAA  260
      |||      | || | |||  | ||| |   ||  ||    ||||  |||
seq2  TGAATATGCTGTCTTTTTTCCA-CTGGATGGTTTTAGCTCCTTTGCCAAA  292

seq1  ATCCATGTTTGAAC-CAAATATTTTAGTTTGTTTTT--GTTTTGTTTT--  305
         || |  ||| | || || | |  |||  ||| |  || ||   ||  
seq2  GATCAAG--TGACCACAGATGTGTGGGTTCATTTCTGGGTCTTCAATTCT  340

seq1  --------------------------------------------------  305
                                                        
seq2  ATTTCATTGATCCATCTGCCTGTTATTGTACCAAAACCATGCAATTTTAA  390

seq1  --------------------------------------------------  305
                                                        
seq2  ACACTATTGCTCTGTAGTACAGCTTGAGGTCTGGGATGCTAATTCTCCCA  440

seq1  --------------------------------------------------  305
                                                        
seq2  GAAGTTTTTATTGTTGAGAATAGTTTTCACTATCCTGAGTTTTGTTTTGT  490

seq1  --------------------------  305
                                
seq2  TTTGTTTTTTGTTTTTGTTTTGTTTT  516

seq1: chr4_24891897_24892860
seq2: B6Ng01-317F19.g_63_1032

seq1  GAATTCCTATAGACTGTTATGCAGGAGAATCGATGACCTAAAAATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAGACTGTTATGCAGGAGAATCGATGACCTAAAAATAGAAG  50

seq1  GCCCAACAATGAGTACAGGTTGGTGTATTTGCTGGCAAAGGTGCCATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAATGAGTACAGGTTGGTGTATTTGCTGGCAAAGGTGCCATAGG  100

seq1  TTAAGGGGAAAGTTAAATAAAATGTCAAGCACAGGGTTCCATTGGTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGGAAAGTTAAATAAAATGTCAAGCACAGGGTTCCATTGGTCCAA  150

seq1  TGCCCCTTGGCCTGCTCACTTGCTGAAGACATCACATGTTGAGGAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTGGCCTGCTCACTTGCTGAAGACATCACATGTTGAGGAGGATG  200

seq1  GAAGTGCATTCGAAGTTACAGTTCTAGCTCCTGCTTAGAGAAAACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCATTCGAAGTTACAGTTCTAGCTCCTGCTTAGAGAAAACAGAAT  250

seq1  CCGTACAAGGGAAACACAGGCAAATGTGGAGAGAAACTGAGTCTTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACAAGGGAAACACAGGCAAATGTGGAGAGAAACTGAGTCTTTAAGT  300

seq1  CCAGCAGAAAAAAATTTAAAAAGGAAATTTAAAGATTTTTTTTTTTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAAAAAATTTAAAAAGGAAATTTAAAGATTTTTTTTTTTTTTG  350

seq1  GGGGTAGGGGGTGAC-TACGTCATTACTAGTCT-TTATAAATAGGAGCCG  398
      ||||||||||||||| | |  | |  || | ||   ||  |   |  |  
seq2  GGGGTAGGGGGTGACTTTCTGCCTACCTGGGCTCGGATTTACTTGTTC--  398

seq1  ATAAATTACACAGCCTTCACTACAG-------ATTTTCTTAAGTCCCTTT  441
       |||||||      |||  || |||       |||| || | |   ||||
seq2  -TAAATTA------CTTTCCT-CAGGGGAAGAATTTACTAATGATTCTTT  440

seq1  GGATTAAGTCCTGGTTATTAGATCCAGCCATCCCAACTGCTTTATGATGG  491
      | |||  ||| ||  ||  | | ||| ||| | |   |   || ||| | 
seq2  GCATTTTGTCTTGTCTAAAATACCCATCCAACGCTTGTAACTTTTGACGA  490

seq1  ATTCTCTTCACTAGGACGGAGCCTTCCTTGTTTCTTTTCCTCCTCCCCTC  541
      |||||  |   |    |  | || |||  || || | |  | ||||| | 
seq2  ATTCTTATGTTTGTTGCATACCCCTCCACGTATCGTATTGTGCTCCCATG  540

seq1  TTCTCTCCTCCCTTCTCCTCCCCTTCCTTGCCCTCCCTCCCGCTTTCTTT  591
      |       ||   | |  |    |   |||      || | | | | | |
seq2  T-------TCATATATTTTTAAATAATTTGAAGCTTCTTCTGATATTTCT  583

seq1  TCT-----CCAAAGCCTGGAGCTTAGT-TTCTCTCCATCTGGTAACACAA  635
      |||     ||| |  || |     ||| | ||||     |  | || |  
seq2  TCTATGGCCCATATGCTAGTTGGAAGTGTGCTCT-----TAATGACGC--  626

seq1  ATTGCTTCTACCTCTTGCAAGCAGCCGTGTACTCC------ACAGTGGCC  679
          ||||||  | |||          | |||| |      | |||  ||
seq2  ----CTTCTA-TTGTTG---------ATTTACTGCTAAATTAGAGTCACC  662

seq1  TA----AGGGTAAGAACCAAGTTGGTTGAAGCC----------AGG----  711
      ||    |  ||||   |||    | || |||||          | |    
seq2  TACATGACTGTAAACGCCA----GTTTAAAGCCTTTTTACTTTACGTATT  708

seq1  --GCTAA---------AAGGTGCAAGCTCCTTTGAATTAGAAAATGTCAC  750
        ||| |          |||||||    |      |||||| |||||   
seq2  TTGCTGATCTTTGTTTTAGGTGCACAAAC------ATTAGAGAATGTTGT  752

seq1  TCA-TACCTTCAGAGTCCTTTGCTGG--GACTG----ATGT--TTGAAGC  791
       || || ||| | |   |||  || |   ||||    ||||  ||   ||
seq2  ACACTATCTTAAAA--TCTTGACTTGATCACTGCATAATGTTCTTTGTGC  800

seq1  CCAGGCTGGATCATACCCCCTAATTGCCTAACATCT-TCCTTTCCATTTC  840
      |     || | | |   |||  | |  || | |||| |  ||||     |
seq2  C----TTGTAACTT---CCCACACT--CTGAAATCTGTTTTTTCTGGAGC  841

seq1  CGTTAGAGTGGTCCCACAGG-----ACTGCGAAGCAAGGATTGAAACCAA  885
         || || |||     |||     | | ||||  ||||  || || |  
seq2  TAATATAG-GGT-----AGGTTTTTAGTTCGAATGAAGGTATGTAAACTC  885

seq1  CAG---ATACAACAGCAGCTTTGGATG-CTGGTCTGCTGTGGAGTCAGGA  931
       ||   ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGGTAATACAACAGCAGCTTTGGATGCCTGGTCTGCTGTGGAGTCAGGA  935

seq1  AAACTGC-TAGTGCTCCGAGCC-TCCTGGGCCCTC  964
      ||||||| || ||||||||||| ||| ||||||||
seq2  AAACTGCTTAATGCTCCGAGCCTTCCGGGGCCCTC  970