BAC Information

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BAC

Clone NameB6Ng01-317J24
Chromosome4 (Build37)
Map Location 43,599,343 - 43,724,832
singlet/doubletdoublet
Overlap gene1110029E03Rik, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71
Upstream geneLOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, LOC100039672
Downstream geneLOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317J24.bB6Ng01-317J24.g
ACCGA107722GA107723
length5861,156
definitionB6Ng01-317J24.b B6Ng01-317J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,599,343 - 43,599,934)(43,723,670 - 43,724,832)
sequence
ctttctgaggttatagggcagtggggacctggctggtggcctgggcagtg
atgtgtgcaggggcatcagtggttagagcccagcccactgagtcccaggg
gggtagcctttggggcaaggggcaggacaggttcagggtcagggttggca
caggccacctatgcagggacaaggaaaacatccgccggagctgggccagg
ctgtgttccagcagcgcaggcaggtgcgcaggggaggaagtgagcttatt
ccgggactgagtcaccccaacccttgctttacccaaatgggacagagcgt
ttggagatgatggctcagggagatgggggactggagcctggggaggggaa
ggtcctgaacaaacccaaaggagtcctggaaggggctgctttctgcccag
caaagcccctaaattcatagcttgtggctgaacagacacagcgaggcagg
ttggagctgggaaactcgaggggaagggcagaggaaaggccctactgagt
cttcctagaatggagcatcccagaaagcaaaggcatgaggaggtgaggcc
caagctgctaaggcaccatccatgcaagtcataagg

gaattcattcacacacacagatactgctgtaaatcacgctgttgacatat
aagaagagtcatgtgatcagaacaaagccaaagacatgtattaatgaagg
gacaatgtccatgcatgagtaaacttgatttttgtaaagatatcaatccc
atcccaaaccagccggtcaatcaccagaagacctttcatgaaatatgaca
aactgattgcaaaattcgtgtaggaaagaaatgtgcaataatagccaaag
aattgttgaaaggggctgacagggccaagggctggcttacagcagctttt
aaagctgttcgtttcctgtgaggtgaccaccacggcagttattgcagtgt
gaggacaagaagaggcattcctttagaatgggccagtgtgtccaaaaata
gacacacacggacctgtgaaattagttatgacaaaggcaacttttaaggt
ctgtgataagacagtctataataaattcttccataagtgtgcagacttta
cccagtgcagagaagatacggtctgaaaaagagccaaagtggaaaacaag
ttgaaaagtctgtggaacaaagatcaccatgagttccaggctagcctgca
ctagctacagagtgagagcctgtctcaagagagccacaatagaaaattta
tcaggaaaaaaatacttttaaaatgtatttataacttgggaacatgaaca
cacacacacacaatagagaaagctgtgtgctccaaataattgaatatcga
tggaacaaaatatagcagtaaaaggtttttaaaaaatggggtgaagagat
taagaacacagacatgtgtgtgcaagcaaaacaccaacgcacataaaata
aaaaggaaacaactctttttttaaaatacaacaacaacaacagcaaaaat
caagcccagttctaaaatgaagcggtgccgtggggtttgtctggaggcag
ggaatcaagccctgtgtctaggagaagaaggtgtgctttaggccggcacc
ccacacacttagacgctgtttaagaggacccccttaagcacagaggcatg
gatcctggaagctagaaccttcagtggagagggtgtcacaactgatgctc
atggaatacaggaatggaccagggtgggaggcagattgtcactgtcactg
ttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43599343_43599934
seq2: B6Ng01-317J24.b_50_641

seq1  GAATTCCTTTCTGAGGTTATAGGGCAGTGGGGACCTGGCTGGTGGCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTGAGGTTATAGGGCAGTGGGGACCTGGCTGGTGGCCTGG  50

seq1  GCAGTGATGTGTGCAGGGGCATCAGTGGTTAGAGCCCAGCCCACTGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATGTGTGCAGGGGCATCAGTGGTTAGAGCCCAGCCCACTGAGTC  100

seq1  CCAGGGGGGTAGCCTTTGGGGCAAGGGGCAGGACAGGTTCAGGGTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGGTAGCCTTTGGGGCAAGGGGCAGGACAGGTTCAGGGTCAGGG  150

seq1  TTGGCACAGGCCACCTATGCAGGGACAAGGAAAACATCCGCCGGAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAGGCCACCTATGCAGGGACAAGGAAAACATCCGCCGGAGCTGG  200

seq1  GCCAGGCTGTGTTCCAGCAGCGCAGGCAGGTGCGCAGGGGAGGAAGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGTGTTCCAGCAGCGCAGGCAGGTGCGCAGGGGAGGAAGTGAG  250

seq1  CTTATTCCGGGACTGAGTCACCCCAACCCTTGCTTTACCCAAATGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCGGGACTGAGTCACCCCAACCCTTGCTTTACCCAAATGGGACA  300

seq1  GAGCGTTTGGAGATGATGGCTCAGGGAGATGGGGGACTGGAGCCTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTTTGGAGATGATGGCTCAGGGAGATGGGGGACTGGAGCCTGGGGA  350

seq1  GGGGAAGGTCCTGAACAAACCCAAAGGAGTCCTGGAAGGGGCTGCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGTCCTGAACAAACCCAAAGGAGTCCTGGAAGGGGCTGCTTTCT  400

seq1  GCCCAGCAAAGCCCCTAAATTCATAGCTTGTGGCTGAACAGACACAGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAAAGCCCCTAAATTCATAGCTTGTGGCTGAACAGACACAGCGA  450

seq1  GGCAGGTTGGAGCTGGGAAACTCGAGGGGAAGGGCAGAGGAAAGGCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTTGGAGCTGGGAAACTCGAGGGGAAGGGCAGAGGAAAGGCCCTA  500

seq1  CTGAGTCTTCCTAGAATGGAGCATCCCAGAAAGCAAAGGCAGGAGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGAGTCTTCCTAGAATGGAGCATCCCAGAAAGCAAAGGCATGAGGAGGT  550

seq1  GAGGCCCAAGCTGCTAAGGCACCATCCATGCAAGTCATAAGG  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCAAGCTGCTAAGGCACCATCCATGCAAGTCATAAGG  592


seq1: chr4_43723670_43724832
seq2: B6Ng01-317J24.g_65_1220 (reverse)

seq1  GCAGAACAGGTGGCCAGTGACCACTATCCTCTGCCTCC--ACCTGGTCCC  48
      |||||||||   | ||||||| |      |||||||||   |||||||| 
seq2  GCAGAACAG--TGACAGTGACAA------TCTGCCTCCCACCCTGGTCCA  42

seq1  TTTTCCCTGTACT-CATG-GCATCAG-TGTGACA-CCTCTTCACTGAAGT  94
      ||   |||||| | |||| ||||||| ||||||| ||||| |||||||| 
seq2  TT---CCTGTATTCCATGAGCATCAGTTGTGACACCCTCTCCACTGAAGG  89

seq1  TCCTAGCTTCCAGGATCCATGCCTCTGGTGGCTTAGGGGGTCTCTTTAAA  144
      | |||||||||||||||||||||||| |||  | ||||||||   |||||
seq2  TTCTAGCTTCCAGGATCCATGCCTCT-GTGCTTAAGGGGGTCCTCTTAAA  138

seq1  CAGCGTTCTAAGGTGTGTGGGGTG-CGGCTTAAAGCACACCCTTCTCTCC  193
      ||||| ||||| |||||||||||| |||| ||||||||||| |  |||||
seq2  CAGCG-TCTAA-GTGTGTGGGGTGCCGGCCTAAAGCACACCTTCTTCTCC  186

seq1  TAGACACAGGGCTTGATTCCCTGCCT-CAGACAAACCCCACGGCACCGCT  242
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGACACAGGGCTTGATTCCCTGCCTCCAGACAAACCCCACGGCACCGCT  236

seq1  TCATTTTAGAACTGGGCTTTGATTTTTGCTGTTGTTGTTGTTGTATTTTA  292
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATTTTAGAACTGGGC-TTGATTTTTGCTGTTGTTGTTGTTGTATTTTA  285

seq1  AAAAAAGAGTTGTTTCCTTTTTATTTTATGTGCGTTGGTGTTTTGCTTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGTTGTTTCCTTTTTATTTTATGTGCGTTGGTGTTTTGCTTGC  335

seq1  ACACACATGTCTGTGTTCTTAATCTCTTCACCCCATTTTTTAAAAACCTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGTCTGTGTTCTTAATCTCTTCACCCCATTTTTTAAAAACCTT  385

seq1  TTACTGCTATATTTTGTTCCATCGATATTCAATTATTTGGAGCACACAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTATATTTTGTTCCATCGATATTCAATTATTTGGAGCACACAGC  435

seq1  TTTCTCTATTGTGTGTGTGTGTGTTCATGTTCCCAAGTTATAAATACATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATTGTGTGTGTGTGTGTTCATGTTCCCAAGTTATAAATACATT  485

seq1  TTAAAAGTATTTTTTTCCTGATAAATTTTCTATTGTGGCTCTCTTGAGAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTATTTTTTTCCTGATAAATTTTCTATTGTGGCTCTCTTGAGAC  535

seq1  AGGCTCTCACTCTGTAGCTAGTGCAGGCTAGCCTGGAACTCATGGTGATC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCACTCTGTAGCTAGTGCAGGCTAGCCTGGAACTCATGGTGATC  585

seq1  TTTGTTCCACAGACTTTTCAACTTGTTTTCCACTTTGGCTCTTTTTCAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCACAGACTTTTCAACTTGTTTTCCACTTTGGCTCTTTTTCAGA  635

seq1  CCGTATCTTCTCTGCACTGGGTAAAGTCTGCACACTTATGGAAGAATTTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATCTTCTCTGCACTGGGTAAAGTCTGCACACTTATGGAAGAATTTA  685

seq1  TTATAGACTGTCTTATCACAGACCTTAAAAGTTGCCTTTGTCATAACTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACTGTCTTATCACAGACCTTAAAAGTTGCCTTTGTCATAACTAA  735

seq1  TTTCACAGGTCCGTGTGTGTCTATTTTTGGACACACTGGCCCATTCTAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGGTCCGTGTGTGTCTATTTTTGGACACACTGGCCCATTCTAAA  785

seq1  GGAATGCCTCTTCTTGTCCTCACACTGCAATAACTGCCGTGGTGGTCACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCCTCTTCTTGTCCTCACACTGCAATAACTGCCGTGGTGGTCACC  835

seq1  TCACAGGAAACGAACAGCTTTAAAAGCTGCTGTAAGCCAGCCCTTGGCCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAAACGAACAGCTTTAAAAGCTGCTGTAAGCCAGCCCTTGGCCC  885

seq1  TGTCAGCCCCTTTCAACAATTCTTTGGCTATTATTGCACATTTCTTTCCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCCCTTTCAACAATTCTTTGGCTATTATTGCACATTTCTTTCCT  935

seq1  ACACGAATTTTGCAATCAGTTTGTCATATTTCATGAAAGGTCTTCTGGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAATTTTGCAATCAGTTTGTCATATTTCATGAAAGGTCTTCTGGTG  985

seq1  ATTGACCGGCTGGTTTGGGATGGGATTGATATCTTTACAAAAATCAAGTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCGGCTGGTTTGGGATGGGATTGATATCTTTACAAAAATCAAGTT  1035

seq1  TACTCATGCATGGACATTGTCCCTTCATTAATACATGTCTTTGGCTTTGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATGCATGGACATTGTCCCTTCATTAATACATGTCTTTGGCTTTGT  1085

seq1  TCTGATCACATGACTCTTCTTATATGTCAACAGCGTGATTTACAGCAGTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCACATGACTCTTCTTATATGTCAACAGCGTGATTTACAGCAGTA  1135

seq1  TCTGTGTGTGTGAATGAATTC  1163
      |||||||||||||||||||||
seq2  TCTGTGTGTGTGAATGAATTC  1156


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