BAC Information

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BAC

Clone NameB6Ng01-317O22
Chromosome4 (Build37)
Map Location 124,575,813 - 124,714,575
singlet/doubletdoublet
Overlap geneCdca8, 9930104L06Rik, Rspo1, Gnl2
Upstream geneMycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10
Downstream geneDnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2, Csf3r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O22.bB6Ng01-317O22.g
ACCGA107951GA107952
length1,158880
definitionB6Ng01-317O22.b B6Ng01-317O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,575,813 - 124,576,997)(124,713,257 - 124,714,575)
sequence
gaattcagcctgccggggacaggggagagagagtacgctcagcagctgtg
cagtggagcgacaggctgctattgtccggctcacaaagacattgcttttt
tcaaagggtcaggcactgggggaaagactaaaggatttttttaaagttat
ttttaggatgggagacagtaccgctcagttggtagtgtagcctagggttc
actacagccacatgggtctgtctagtcccactggctttacagaggttaaa
aatacgacactccctccctgtcccctataccagcaatcagctgtcaactg
tgagttttggctccagtgatgtccatcggcatcattggaatttaaattgg
gcctactgggtatataccacatgagaccggaagccatatccaagcccttg
tcaaagggcagggtatatgtgtgccatctccacctctgccctttgctatc
tgatgtctatttttttctgactccccggcgtcccagaatctgatactgct
ttttgcactatttcaagggcctcttgcctgtgcaggacactgctggtcac
cagccgctcccgctggcgaacttgatcaagcccttgactgggtcgagtct
catcccaaggccttcatatacaattctccatgctgtgagactggttctct
gagaatcctttgtgaattctttatagggttttccacattgagatcatgcc
atcccatgaggcctttgtgtcttcccattcacgacttttgtttgttttcc
ttgcctggttgctttggctagagcttttagcagtgactggcatcctggcc
tttctccagacagaacgctccccgtctttcactcttgagtgtgatgctca
ctgtgggctttccacgtttgtcctttatcatgttggggtgattttcttct
aatcctcgcttgtctgcagccataccgccgtgaacgagccaatctgggct
gcacactttcttagctcttcaaaccacagatgagactgagatgagagcag
cagatgagaaaactggcaggcagcaggctttcctttcccagtaagcacaa
agtgagagagccttggccacaaatctcccttaagccttgtctaactagac
tgcctcttgctctcaggtcagcccaataaccgctccctgtgcatgtcccg
ctccttct
gaattcacccaccaactaagacacataatgggtttcaacagttttcagag
cccaacttcctgactggatgaaagcaaaaattaaacatcgctgaatggaa
ctgagatttgacaaatgttcctgccagtcctggcaaagaaacctggagcc
aatcacagctgatcagttcacacagagaaagaaccccaaacctcagagtt
aagagggcttgaagggactggtaaaatatccaggacacatccaagaaggc
aacagtgctgagaacgccaggcctttgatgctgaagacagcattcaagtc
aacaacagcagatgcaaacacaagggtcaagtgcccaacactcactactt
gccagggactatgctaagcagcagttacatggtcttctttttacatttat
ttgtgacggggcaccatagtacctgtgtggagatcagaggacagcctgca
ggggttgttatcccctttctgccttctattctgtagggaccagagacaga
accgaggttgtgaggcttgcgggtaaatatcttcaccatcgagcctccat
accaactctcggttttttgtttgtttgttgttgttgttgttgttgttttg
gaaacagaatttcaagtcatccagactagccttaaacttctgattctcct
acctccaactctcatgtgttaggattataggattgcccgcaccacaacca
tcttgagatactgccattcttattccaattttagaaattaggaaattaaa
ggacagagacttaataaacttgcctctagccacatatacaacttgattct
aaatacccagctccatggttaaataatccctctaagtcttccctgaaaca
ctcacacacacaaacatttacatacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124575813_124576997
seq2: B6Ng01-317O22.b_50_1207

seq1  GAATTCAGCCTGCCGGGGACAGGGGAGAGAGAGTACGCTCAGCAGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGCCGGGGACAGGGGAGAGAGAGTACGCTCAGCAGCTGTG  50

seq1  CAGTGGAGCGACAGGCTGCTATTGTCCGGCTCACAAAGACATTGCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGCGACAGGCTGCTATTGTCCGGCTCACAAAGACATTGCTTTTT  100

seq1  TCAAAGGGTCAGGCACTGGGGGAAAGACTAAAGGATTTTTTTAAAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGTCAGGCACTGGGGGAAAGACTAAAGGATTTTTTTAAAGTTAT  150

seq1  TTTTAGGATGGGAGACAGTACCGCTCAGTTGGTAGTGTAGCCTAGGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGATGGGAGACAGTACCGCTCAGTTGGTAGTGTAGCCTAGGGTTC  200

seq1  ACTACAGCCACATGGGTCTGTCTAGTCCCACTGGCTTTACAGAGGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCCACATGGGTCTGTCTAGTCCCACTGGCTTTACAGAGGTTAAA  250

seq1  AATACGACACTCCCTCCCTGTCCCCTATACCAGCAATCAGCTGTCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGACACTCCCTCCCTGTCCCCTATACCAGCAATCAGCTGTCAACTG  300

seq1  TGAGTTTTGGCTCCAGTGATGTCCATCGGCATCATTGGAATTTAAATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGGCTCCAGTGATGTCCATCGGCATCATTGGAATTTAAATTGG  350

seq1  GCCTACTGGGTATATACCACATGAGACCGGAAGCCATATCCAAGCCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTGGGTATATACCACATGAGACCGGAAGCCATATCCAAGCCCTTG  400

seq1  TCAAAGGGCAGGGTATATGTGTGCCATCTCCACCTCTGCCCTTTGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGCAGGGTATATGTGTGCCATCTCCACCTCTGCCCTTTGCTATC  450

seq1  TGATGTCTATTTTTTTCTGACTCCCCGGCGTCCCAGAATCTGATACTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTATTTTTTTCTGACTCCCCGGCGTCCCAGAATCTGATACTGCT  500

seq1  TTTTGCACTATTTCAAGGGCCTCTTGCCTGTGCAGGACACTGCTGGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACTATTTCAAGGGCCTCTTGCCTGTGCAGGACACTGCTGGTCAC  550

seq1  CAGCCGCTCCCGCTGGCGAACTTGATCAAGCCCTTGACTGGGTCGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCTCCCGCTGGCGAACTTGATCAAGCCCTTGACTGGGTCGAGTCT  600

seq1  CATCCCAAGGCCTTCATATACAATTCTCCATGCTGTGAGACTGGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAGGCCTTCATATACAATTCTCCATGCTGTGAGACTGGTTCTCT  650

seq1  GAGAATCCTTTGTGAATTCTTTATAGGGTTTTCCACATTGAGATCATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTTTGTGAATTCTTTATAGGGTTTTCCACATTGAGATCATGCC  700

seq1  ATCCCATGAGGCCTTTGTGTCTTCCCATTCACGACTTTTGTTTGTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGAGGCCTTTGTGTCTTCCCATTCACGACTTTTGTTTGTTTTCC  750

seq1  TTGCCTGGTTGCTTTGGCTAGAGCTTTTAGCAGTGACTGGCATCCTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGTTGCTTTGGCTAGAGCTTTTAGCAGTGACTGGCATCCTGGCC  800

seq1  TTTCTCCAGACAGAACGCTCCCCGTCTTTCACTCTTGAGTGTGATGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAGACAGAACGCTCCCCGTCTTTCACTCTTGAGTGTGATGCTCA  850

seq1  CTGTGGGCTTTCCACGTTTGTCCTTTATCATGTTGGGGTGATTTTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCTTTCCACGTTTGTCCTTTATCATGTTGGGGTGATTTTCTTCT  900

seq1  AATCCTCGCTTGTCTGCAGCCATACCGCCGTGAACGAGCCAATCTGGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCGCTTGTCTGCAGCCATACCGCCGTGAACGAGCCAATCTGGGCT  950

seq1  GCACACTTTCTTAGCTCTTCAAACCACAGAATGAGACTGAAGGATGAGAA  1000
      ||||||||||||||||||||||||||||| ||||||||||  |||||| |
seq2  GCACACTTTCTTAGCTCTTCAAACCACAG-ATGAGACTGA--GATGAG-A  996

seq1  GCAAGCAGGATGAGGAAAACTGGGAAGGCAAGCAGGGCTTTCC-TTCCCA  1049
      || |||| ||||| ||||||| || |||| |||| |||||||| ||||||
seq2  GC-AGCA-GATGA-GAAAACT-GGCAGGC-AGCA-GGCTTTCCTTTCCCA  1040

seq1  GTAGGCAACAAAAGTGAGAGAAGCCTTGGCCACAAATTCTCCC-TAAGCC  1098
      ||| |||   |||||||||| ||||||||||||||| |||||| ||||  
seq2  GTAAGCA--CAAAGTGAGAG-AGCCTTGGCCACAAA-TCTCCCTTAAG--  1084

seq1  CCTGGTCCTACCTAGACTTTGCCCTTCTGGCCTCACAGGCCACGCCCACA  1148
      ||| || ||| ||||||  ||||  ||| | ||| |||| || |||||  
seq2  CCTTGT-CTAACTAGAC--TGCC--TCTTG-CTCTCAGGTCA-GCCCA--  1125

seq1  TTTAACCCCGCTCCCCTGTGCATGCCCCGCTCCTTCT  1185
        |||  ||||| ||||||||||| ||||||||||||
seq2  -ATAA--CCGCT-CCCTGTGCATGTCCCGCTCCTTCT  1158

seq1: chr4_124713257_124714575
seq2: B6Ng01-317O22.g_68_947 (reverse)

seq1  TGTGTGTGTGTGTGTGTGAGTGTGTGTGTGAGTGTGTGTGTGAGTGTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGAGTGTATGTGTGTGTGAGTGTGTGTGTGAGTGTGTGTGTGTGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGAGTGTGCGTGTGAGTGTGCGTGTGCGTGTGTGTGTGTGTGCG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGAGCGTGTGTGTGTGTGTGTGAGCGTGTGAGTGTGAGTGTGTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGAGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTGTGTGAGTGTGTGTGTGTGTGTGAGTGTGTGTGTGAGTGTGTGTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGAGTGTGTGTGTGAGTGTGTGTGTGTGAGTGTGTGAGTGTGTG  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGAGTGTGTGTGTGTGAGTGTGTGTGAGTGTGTGTGTGTGAGTGTG  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGAGTGTGTGTGAGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTG  450
                                                ||||||| 
seq2  ------------------------------------------TGTGTGTA  8

seq1  TGTGAGTGTGTGTGTGTGTGAGTGTGTCAGGGAAGAC-TGGAGGGATTAT  499
      ||| | ||| ||||||||||||||| ||||||||||| | ||||||||||
seq2  TGTAAATGTTTGTGTGTGTGAGTGTTTCAGGGAAGACTTAGAGGGATTAT  58

seq1  TT-ACCATGGAGCTGGGTATTTAGAATCAAGTTGTATATGTGGCTAGAGG  548
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATGGAGCTGGGTATTTAGAATCAAGTTGTATATGTGGCTAGAGG  108

seq1  CAAG-TTATTAAGTCTCTGTCCTTTAATTTCCTAATTTCTAAAATTGGAA  597
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTATTAAGTCTCTGTCCTTTAATTTCCTAATTTCTAAAATTGGAA  158

seq1  TAAGAATGGCAGTATCTCAAGATGGTTGTGGTGCGGGCAATCCTATAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGCAGTATCTCAAGATGGTTGTGGTGCGGGCAATCCTATAATC  208

seq1  CTAACACATGAGAGTTGGAGGTAGGAGAATCAGAAGTTTAAGGCTAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACATGAGAGTTGGAGGTAGGAGAATCAGAAGTTTAAGGCTAGTCT  258

seq1  GGATGACTTGAAATTCTGTTTCCAAAACAACAACAACAACAACAACAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTTGAAATTCTGTTTCCAAAACAACAACAACAACAACAACAAAC  308

seq1  AAACAAAAAACCGAGAGTTGGTATGGAGGCTCGATGGTGAAGATATTTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAACCGAGAGTTGGTATGGAGGCTCGATGGTGAAGATATTTAC  358

seq1  CCGCAAGCCTCACAACCTCGGTTCTGTCTCTGGTCCCTACAGAATAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGCCTCACAACCTCGGTTCTGTCTCTGGTCCCTACAGAATAGAAG  408

seq1  GCAGAAAGGGGATAACAACCCCTGCAGGCTGTCCTCTGATCTCCACACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGGGATAACAACCCCTGCAGGCTGTCCTCTGATCTCCACACAG  458

seq1  GTACTATGGTGCCCCGTCACAAATAAATGTAAAAAGAAGACCATGTAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATGGTGCCCCGTCACAAATAAATGTAAAAAGAAGACCATGTAACT  508

seq1  GCTGCTTAGCATAGTCCCTGGCAAGTAGTGAGTGTTGGGCACTTGACCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTAGCATAGTCCCTGGCAAGTAGTGAGTGTTGGGCACTTGACCCT  558

seq1  TGTGTTTGCATCTGCTGTTGTTGACTTGAATGCTGTCTTCAGCATCAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGCATCTGCTGTTGTTGACTTGAATGCTGTCTTCAGCATCAAAG  608

seq1  GCCTGGCGTTCTCAGCACTGTTGCCTTCTTGGATGTGTCCTGGATATTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCGTTCTCAGCACTGTTGCCTTCTTGGATGTGTCCTGGATATTTT  658

seq1  ACCAGTCCCTTCAAGCCCTCTTAACTCTGAGGTTTGGGGTTCTTTCTCTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCCTTCAAGCCCTCTTAACTCTGAGGTTTGGGGTTCTTTCTCTG  708

seq1  TGTGAACTGATCAGCTGTGATTGGCTCCAGGTTTCTTTGCCAGGACTGGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTGATCAGCTGTGATTGGCTCCAGGTTTCTTTGCCAGGACTGGC  758

seq1  AGGAACATTTGTCAAATCTCAGTTCCATTCAGCGATGTTTAATTTTTGCT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATTTGTCAAATCTCAGTTCCATTCAGCGATGTTTAATTTTTGCT  808

seq1  TTCATCCAGTCAGGAAGTTGGGCTCTGAAAACTGTTGAAACCCATTATGT  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGTCAGGAAGTTGGGCTCTGAAAACTGTTGAAACCCATTATGT  858

seq1  GTCTTAGTTGGTGGGTGAATTC  1319
      ||||||||||||||||||||||
seq2  GTCTTAGTTGGTGGGTGAATTC  880