BAC Information

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BAC

Clone NameB6Ng01-318J18
Chromosome4 (Build37)
Map Location 146,634,747 - 146,635,888
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318J18.bB6Ng01-318J18.g
ACCGA108453GA108454
length1,144973
definitionB6Ng01-318J18.b B6Ng01-318J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggaaacatgagagaaaaatttagaaaaataaatgaaaacatg
gcttcatagatttcaaggatagctatccagactttgatgcgtctctgcat
ggttccgaagtcattaatacccatttattgaacaaaagtcttaaactctc
agaaaaatgctgcccattgacacatattacaaagcattttggtgtctggt
cctgttgttacttaatactccactctaccgtaagtaatgaaatagatttc
cattcttttttaaattatctacagaatgttaatattttgtacatctcaga
atatacattctgaacaaaacctcaacaactcactattagggtattatctt
catcttaatttcatgtatgagttcattcatataaatatcatgaatctgta
aatcttagagaaaaatcccttttagagtagatgaggtgcatactcatgca
cagtttagaaatccaaccattctggaaatacatttggaagtactgggaaa
attacttttactccaagttcaagtatattagaatatttatcctaaattca
ggaagtctcagaaaattaggatctaagaaaaaacattaaatgctacaatg
aacaaatccatatcactccatgtattttccttgatttaaaaaaaaaaaac
acggaaattgttcaacttgagtagaactactgaatgataacaattcattg
gtctcaatactggaatttgatgaaacaggacttcctcattagtagaatct
aagtatgtgtagaagcagtagtggcccttgatttcaaataatcctaggta
gtttctgccaattgcttcatcagggatgttgaaacacacaccaggcaaat
gaaaattagggggcttgagtagctcttatcagtctgggaaattgcaacca
gttagacagtctctcttgattctcattgcacatgatcagtggatttatgc
ctcacttcttaatgacttagagatcatttaaccaatctgagtgacttccc
aggttcatgtaaaatttctagagtgcaaaaaaaacatttttaacacacat
cttgttctgtggttacagcaagcatatgtgaatgttggacaaaaataggt
tccagctagacctgaacctggatgtgcaaggcaacatgtgtaga
gaattctctgatgaatactaagataggattcttgggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
actaagattggattgtttggtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaattctcagattgcctttt
ccagtaaagcatttgtcacattcgctacatttgtaaggtttctctcctgt
atgaattctctgatgaattctgagactgcctttttcggtaaagcatttgt
cgcattcactgcatttgtaagatttctctcctgcatgaattttctgatga
aaattaagatgggatttttgggaaaagcatttgtcccattcagtacattt
gtgaggtgtataatgggaggattctagaatcacattgctaagcttgttcc
atttagaagacttctcttgaatattcatgtgttcaagaacaatgtactgg
ctgtcttgatccatgaccttctcatactttccatgtatgcaatgattttc
tgaaaaaaatataagggcaattagaggtgaaatgaattacttatataagg
agtaagggactcaataatcagtgatctcatggatttgtactctcaagaga
ggttttcctctctctctctctctctctttttttgaatcattacatgtatc
ctaagaagaaccccaaatatgatttatatcaaatgtctggaaatgataat
agcctgctaaatgttattttcaaatttgacagcatacgcacctcaaaata
taatgacccagaattgctcctgtcttaaggaaaaagaaggacaaagaatg
gaaaagaggctgaagggaagggccatctggatatcccagagcatttacat
aaacacatagtaggaaaactcaaagaagaaaggaatttctacaagaagtt
cattcttacccacaaacaccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146634747_146635888
seq2: B6Ng01-318J18.b_49_1192

seq1  GAATTCAAGGAAACATGAGAGAAAAATTTAGAAAAATAAATGAAAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAACATGAGAGAAAAATTTAGAAAAATAAATGAAAACATG  50

seq1  GTTTCATAGATTTCAAGGATAGCTAGCCAGACTTTGCTGCGTCTCTGCAT  100
      | ||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GCTTCATAGATTTCAAGGATAGCTATCCAGACTTTGATGCGTCTCTGCAT  100

seq1  GGTTCTGAAGTCATTAATACCCATTTATTGAACAAAAGTCTTAAACTCTC  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGAAGTCATTAATACCCATTTATTGAACAAAAGTCTTAAACTCTC  150

seq1  AGAAAAATGCTGCCCATTGACACATATTACAAAGCATTTTGGTGTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAAAATGCTGCCCATTGACACATATTACAAAGCATTTTGGTGTCTGGT  200

seq1  CCTGTTGTTACTTAATACTCCACTCTACCATAAGTAATGAAATAGATTTC  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGTTGTTACTTAATACTCCACTCTACCGTAAGTAATGAAATAGATTTC  250

seq1  CATTCTTTTTTAAATCATCTACAGAATGTTAATATTTTGCACATCTCAGA  300
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CATTCTTTTTTAAATTATCTACAGAATGTTAATATTTTGTACATCTCAGA  300

seq1  ATATACATTCTGAACAAAACCTCAACAACTCACTATTAGGGTATTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTCTGAACAAAACCTCAACAACTCACTATTAGGGTATTATCTT  350

seq1  CATCTTAATTTCATGTATGAGTTCATTCATATAAATATCATGAATCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAATTTCATGTATGAGTTCATTCATATAAATATCATGAATCTGTA  400

seq1  AATCTTAGAGAAAAATCCTTTTTAGAGTAGATGAGGTGCATACTCATGCA  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATCTTAGAGAAAAATCCCTTTTAGAGTAGATGAGGTGCATACTCATGCA  450

seq1  CAGTTTAGAAATCCAACCATCCTGGAAATACATTTGTAAGTACTGAGAAA  500
      |||||||||||||||||||| ||||||||||||||| |||||||| ||||
seq2  CAGTTTAGAAATCCAACCATTCTGGAAATACATTTGGAAGTACTGGGAAA  500

seq1  ATTACTTTTACTCCAAGTTCAAGTATATTAGAATATTTATCCTAAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTTACTCCAAGTTCAAGTATATTAGAATATTTATCCTAAATTCA  550

seq1  GGAAGTCTCAGAAAATTAGGATCTAAGAAAAAACATTAAATGCTACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTCAGAAAATTAGGATCTAAGAAAAAACATTAAATGCTACAATG  600

seq1  AACAAATCCATATCACTCCATGTATTTTCCTTGATTAAAAAAAAAAAACC  650
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AACAAATCCATATCACTCCATGTATTTTCCTTGATTTAAAAAAAAAAAAC  650

seq1  ACGGAAATTGTTCAACTTGAGTAGAAGTACTGAATGATAACAATTCATTG  700
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACGGAAATTGTTCAACTTGAGTAGAACTACTGAATGATAACAATTCATTG  700

seq1  GTCTCAATACTGGAATTTGATGAAACAGGACTTCCTCATTAGTAGAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATACTGGAATTTGATGAAACAGGACTTCCTCATTAGTAGAATCT  750

seq1  AAGTATGAGTAGAAGCAGTAGTGGCCCTTGATTTCAAATAATCCTAGGTA  800
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTGTAGAAGCAGTAGTGGCCCTTGATTTCAAATAATCCTAGGTA  800

seq1  GTTTCTGCCAATTGCTTCATCAGGGATGTTGAAACTCACACACCAGGCAA  850
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  GTTTCTGCCAATTGCTTCATCAGGGATGTTGAAA--CACACACCAGGCAA  848

seq1  ATGAAAATTAGGGGGCTTGAGTAGCTCTTATCAGTCT-GGAAATTGCAAC  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGAAAATTAGGGGGCTTGAGTAGCTCTTATCAGTCTGGGAAATTGCAAC  898

seq1  CAGTTAGACAGTCTCTCTTGATTCTCATTGCACATGATCAGTGGATTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGACAGTCTCTCTTGATTCTCATTGCACATGATCAGTGGATTTAT  948

seq1  GCCTCACTTCTTAATGACTTAGAGATCATTAACCAAATCTGAAGTGACTT  999
      |||||||||||||||||||||||||||||| | | |||||| ||||||||
seq2  GCCTCACTTCTTAATGACTTAGAGATCATTTAACCAATCTG-AGTGACTT  997

seq1  -CCAGGTTCATGTAAAAATTTCTAGAAGTGC--AAAAAACATTTTT-GCA  1045
       |||||||||||| ||||||||||| |||||  |||||||||||||  ||
seq2  CCCAGGTTCATGT-AAAATTTCTAG-AGTGCAAAAAAAACATTTTTAACA  1045

seq1  CACATTCCTTG-TCTGTGG-TACAGCAAGCATATGGTGATGGTTGAC-AA  1092
      |||||  |||| ||||||| |||||||||||||||   ||| | ||| ||
seq2  CACAT--CTTGTTCTGTGGTTACAGCAAGCATATGTGAATGTTGGACAAA  1093

seq1  AATAGG-TCCAGGTAGACTGACTGAGTTT---TGTGGAAGGCAACATGTG  1138
      |||||| ||||| |||||   ||||   |   |||| |||||||||||||
seq2  AATAGGTTCCAGCTAGAC---CTGAACCTGGATGTGCAAGGCAACATGTG  1140

seq1  TAGA  1142
      ||||
seq2  TAGA  1144