BAC Information

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BAC

Clone NameB6Ng01-318N09
Chromosome4 (Build37)
Map Location 111,417,008 - 111,516,029
singlet/doubletdoublet
Overlap geneSpata6, LOC621612
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneSlc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318N09.bB6Ng01-318N09.g
ACCGA108623GA108624
length1,034994
definitionB6Ng01-318N09.b B6Ng01-318N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,515,002 - 111,516,029)(111,417,008 - 111,417,997)
sequence
gaattcttctgggatcctgaaaagtgtgacaactggaggttacaagtaaa
atgtatttctaggcattggaagctgatccttaagaataaggatggagaga
gagtggaggacgttcacagaattcaaagcaggatgctccatcaggatctg
cttagttccctgagaatggggacagagagtggggagggaccacaagaggt
agtctgttacaaaactgggattgagactggggagttggatttggagaaga
gaaggaaaatgaaaatttaaagcttgcctacatgcctactggcctacttg
cttcttttgcaggcttgactgctggattcccagggaatgtctgctagggt
cttcagttggagttcctggcttgctccctccctcatatggtccagcaaat
tccaatttcctcccacttcctccaattccacctattcagaaagcctctgg
gcagaaaagatgcaaaaaagccaagtcctgcatttctgacatacatgaca
ggtgtcccaaccccctcacctgaagtcacaagccaccaggtgcccccccc
atccccaacacacacacagagtttataaaaggctcccaagtcataatctg
cctgtgatttcttccattttcatctcctgagattgatgaactcagccagg
atcccatttctaaataaacctgccttttttagacttttaatttggccgaa
ttggcttatttctttgtcagagaaaacctatcatcagtggctggaattgg
gggaaggaagattagaagagaagatatgcctgatctactagagaatgggg
tagagagaagagggaggttgcagcagtgatctgctataaagtagttgaga
atggcgggattggatttggaggagtagagggaaaggtgaagatacacagt
tagggttacctatttcccttgctctgagtggccagtggggttccccagcg
aatgtctcctgcagttgggaacctgggatactctgggagagttgtgggga
agttctgagaataagatcttttgcgattccacta

gaattcctgtttcttactttctgtcaaatttttattacgtaggcaatgga
agaatatggaataagaaattaatgtggatgtttgggaaaaagtgaaaata
ttcttctttcttgagaagggtctcatgtagcccaggatacccttgcattt
gtcatcttcctgcctccgtgcttggagtattaggattactaaaatcagct
ccttatgttctaaatatactgttaggggatggagtattatgtaatattat
aatgttggattcacatcttaaagatctttaatattttcttaatgatatgg
ctgaaaaatgatactggaatgtgtcaggggttaaagagactggtgtgtac
tgtttagaaactcagtattttccctacatactttgtccatcataatgagt
gtgctgatttgagtgagaatggtccacacaggctcatacatttgaatatt
tgggctcaagttagtaaaagtatttagggaaaattaggaggtgtgtgacc
ttgttgaagcagagggctgagctttcaggttttaaaagcccaaactgtgg
gcttcccattctccctggaggctcttggccaccagcctgaggggagaagg
ggagcagaggcaaagaacagggttcttatggctgtaagtatggacatgga
tggaatgacctcctgagactgctgcatcgagacacgtctactttattgtt
ttagagatagagtatataagggcattttaaggggtatggttggaaagggt
taaattgatcatggcatcaagagggcaggaagggctgattggttttagta
acagtacttaaattatcctgcaaggcgggaagccaggttgggacatgcat
gctgagttatgcagcttgaagagagctcatgtatacgtcacttttcagac
aaggccaatccacctgtgttcaggacactctccagactagacactctcag
aaggcagatacagaaatggaatgcccccatttgggcttgctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111515002_111516029
seq2: B6Ng01-318N09.b_46_1079 (reverse)

seq1  TAGTGG-ATCAC-AAAGATCTTTATCTCAAAACTTTCCCCACAACTCTTC  48
      |||||| ||| | |||||||||  ||||| ||| |||||||||||||| |
seq2  TAGTGGAATCGCAAAAGATCTTATTCTCAGAAC-TTCCCCACAACTCTCC  49

seq1  CA-AATATCCCA-GTTCCCAACTGCAGGAGACATTCGCTGGG--AACCCA  94
      || | ||||||| |||||||||||||||||||||||||||||  | ||||
seq2  CAGAGTATCCCAGGTTCCCAACTGCAGGAGACATTCGCTGGGGAACCCCA  99

seq1  CTGGCCACTCAGAGC-AGGGAAATAGGTAA-CCTAACTGTGTATCTTCAC  142
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CTGGCCACTCAGAGCAAGGGAAATAGGTAACCCTAACTGTGTATCTTCAC  149

seq1  CTTTCCCTCTACTCCTCCAAATCCAATCCCGCCATTCTCAACTACTTTAT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCTACTCCTCCAAATCCAATCCCGCCATTCTCAACTACTTTAT  199

seq1  AGCAGATCACCTGCTGCAACCTCCCTCTTCTCTCTACCCCATTCTCTAGT  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCA-CTGCTGCAACCTCCCTCTTCTCTCTACCCCATTCTCTAGT  248

seq1  AGATCAGGCATATCTTCTCTTCTAATCTTCCTTCCCCCAATTCCAGCCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGGCATATCTTCTCTTCTAATCTTCCTTCCCCCAATTCCAGCCAC  298

seq1  TGATGATAGGTTTTCTCTGACAAAGAAATAAGCCAATTCGGCCAAATTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAGGTTTTCTCTGACAAAGAAATAAGCCAATTCGGCCAAATTAA  348

seq1  AAGTCTAAAAAAGGCAGGTTTATTTAGAAATGGGATCCTGGCTGAGTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAAAAAGGCAGGTTTATTTAGAAATGGGATCCTGGCTGAGTTCA  398

seq1  TCAATCTCAGGAGATGAAAATGGAAGAAATCACAGGCAGATTATGACTTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCAGGAGATGAAAATGGAAGAAATCACAGGCAGATTATGACTTG  448

seq1  GGAGCCTTTTATAAACTCTGTGTGTGTGTTGGGGATGGGGGGGGCACCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTTTATAAACTCTGTGTGTGTGTTGGGGATGGGGGGGGCACCTG  498

seq1  GTGGCTTGTGACTTCAGGTGAGGGGGTTGGGACACCTGTCATGTATGTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTGACTTCAGGTGAGGGGGTTGGGACACCTGTCATGTATGTCA  548

seq1  GAAATGCAGGACTTGGCTTTTTTGCATCTTTTCTGCCCAGAGGCTTTCTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAGGACTTGGCTTTTTTGCATCTTTTCTGCCCAGAGGCTTTCTG  598

seq1  AATAGGTGGAATTGGAGGAAGTGGGAGGAAATTGGAATTTGCTGGACCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGGAATTGGAGGAAGTGGGAGGAAATTGGAATTTGCTGGACCAT  648

seq1  ATGAGGGAGGGAGCAAGCCAGGAACTCCAACTGAAGACCCTAGCAGACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAGGGAGCAAGCCAGGAACTCCAACTGAAGACCCTAGCAGACAT  698

seq1  TCCCTGGGAATCCAGCAGTCAAGCCTGCAAAAGAAGCAAGTAGGCCAGTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGAATCCAGCAGTCAAGCCTGCAAAAGAAGCAAGTAGGCCAGTA  748

seq1  GGCATGTAGGCAAGCTTTAAATTTTCATTTTCCTTCTCTTCTCCAAATCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTAGGCAAGCTTTAAATTTTCATTTTCCTTCTCTTCTCCAAATCC  798

seq1  AACTCCCCAGTCTCAATCCCAGTTTTGTAACAGACTACCTCTTGTGGTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCAGTCTCAATCCCAGTTTTGTAACAGACTACCTCTTGTGGTCC  848

seq1  CTCCCCACTCTCTGTCCCCATTCTCAGGGAACTAAGCAGATCCTGATGGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACTCTCTGTCCCCATTCTCAGGGAACTAAGCAGATCCTGATGGA  898

seq1  GCATCCTGCTTTGAATTCTGTGAACGTCCTCCACTCTCTCTCCATCCTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGCTTTGAATTCTGTGAACGTCCTCCACTCTCTCTCCATCCTTA  948

seq1  TTCTTAAGGATCAGCTTCCAATGCCTAGAAATACATTTTACTTGTAACCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGGATCAGCTTCCAATGCCTAGAAATACATTTTACTTGTAACCT  998

seq1  CCAGTTGTCACACTTTTCAGGATCCCAGAAGAATTC  1028
      ||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGTCACACTTTTCAGGATCCCAGAAGAATTC  1034


seq1: chr4_111417008_111417997
seq2: B6Ng01-318N09.g_68_1061

seq1  GAATTCCTGTTTCTTACTTTCTGTCAAATTTTTATTACGTAGGCAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTTCTTACTTTCTGTCAAATTTTTATTACGTAGGCAATGGA  50

seq1  AGAATATGGAATAAGAAATTAATGTGGATGTTTGGGAAAAAGTGAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGGAATAAGAAATTAATGTGGATGTTTGGGAAAAAGTGAAAATA  100

seq1  TTCTTCTTTCTTGAGAAGGGTCTCATGTAGCCCAGGATACCCTTGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTTGAGAAGGGTCTCATGTAGCCCAGGATACCCTTGCATTT  150

seq1  GTCATCTTCCTGCCTCCGTGCTTGGAGTATTAGGATTACTAAAATCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTCCTGCCTCCGTGCTTGGAGTATTAGGATTACTAAAATCAGCT  200

seq1  CCTTATGTTCTAAATATACTGTTAGGGGATGGAGTATTATGTAATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTTCTAAATATACTGTTAGGGGATGGAGTATTATGTAATATTAT  250

seq1  AATGTTGGATTCACATCTTAAAGATCTTTAATATTTTCTTAATGATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGATTCACATCTTAAAGATCTTTAATATTTTCTTAATGATATGG  300

seq1  CTGAAAAATGATACTGGAATGTGTCAGGGGTTAAAGAGACTGGTGTGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATGATACTGGAATGTGTCAGGGGTTAAAGAGACTGGTGTGTAC  350

seq1  TGTTTAGAAACTCAGTATTTTCCCTACATACTTTGTCCATCATAATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAAACTCAGTATTTTCCCTACATACTTTGTCCATCATAATGAGT  400

seq1  GTGCTGATTTGAGTGAGAATGGTCCACACAGGCTCATACATTTGAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATTTGAGTGAGAATGGTCCACACAGGCTCATACATTTGAATATT  450

seq1  TGGGCTCAAGTTAGTAAAAGTATTTAGGGAAAATTAGGAGGTGTGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAAGTTAGTAAAAGTATTTAGGGAAAATTAGGAGGTGTGTGACC  500

seq1  TTGTTGAAGCAGAGGGCTGAGCTTTCAGGTTTTAAAAGCCCAAACTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGCAGAGGGCTGAGCTTTCAGGTTTTAAAAGCCCAAACTGTGG  550

seq1  GCTTCCCATTCTCCCTGGAGGCTCTTGGCCACCAGCCTGAGGGGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCATTCTCCCTGGAGGCTCTTGGCCACCAGCCTGAGGGGAGAAGG  600

seq1  GGAGCAGAGGCAAAGAACAGGGTTCTTATGGCTGTAAGTATGGACATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAGGCAAAGAACAGGGTTCTTATGGCTGTAAGTATGGACATGGA  650

seq1  TGGAATGACCTCCTGAGACTGCTGCATCGAGACACGTCTACTTTATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGACCTCCTGAGACTGCTGCATCGAGACACGTCTACTTTATTGTT  700

seq1  TTAGAGATAGAGTATATAAGGGCATTTTAAGGGGTATGGTTGGAAAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGATAGAGTATATAAGGGCATTTTAAGGGGTATGGTTGGAAAGGGT  750

seq1  T-AATTGATCATGGCATCAAGAGGGCAGGAAGGGCTGATTGGTTTTAGT-  798
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAATTGATCATGGCATCAAGAGGGCAGGAAGGGCTGATTGGTTTTAGTA  800

seq1  ACAGTACTT-AATTATCCTGC-AGGCGGGAAGCCAGGTTGGGACATGCAT  846
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGTACTTAAATTATCCTGCAAGGCGGGAAGCCAGGTTGGGACATGCAT  850

seq1  GCTGAGTTATGCAGCTTTGAAGAGAGC-CCTGTATAAGGTCACTTTTCAG  895
      ||||||||||||||| ||||||||||| | ||||| | ||||||||||||
seq2  GCTGAGTTATGCAGC-TTGAAGAGAGCTCATGTAT-ACGTCACTTTTCAG  898

seq1  ACAAGGCC-ATCCACCTGTGTTCAGGGACACTCTCCAGACAAAGACACTC  944
      |||||||| ||||||||||||||| |||||||||||||||  ||||||||
seq2  ACAAGGCCAATCCACCTGTGTTCA-GGACACTCTCCAGAC-TAGACACTC  946

seq1  TCAG-AGGCAGAGACAGAAAGGGAAT-CCCCCATTTTGGGCTGCTGAG  990
      |||| ||||||| ||||||| ||||| ||||||||| ||  |||||||
seq2  TCAGAAGGCAGATACAGAAATGGAATGCCCCCATTTGGGCTTGCTGAG  994


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