BAC Information

Click to search

BAC

Clone NameB6Ng01-318P03
Chromosome4 (Build37)
Map Location 147,370,619 - 147,506,697
singlet/doubletdoublet
Overlap geneNppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik
Upstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb
Downstream geneMad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P03.bB6Ng01-318P03.g
ACCGA108705GA108706
length1,084907
definitionB6Ng01-318P03.b B6Ng01-318P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,505,610 - 147,506,697)(147,370,619 - 147,371,251)
sequence
gaattcctttttaggaccagttaacatccccttctcctgaaggaccacag
tgtgtttgtactctcatctgctgatggacatttggatctgctttggccaa
tcaactgacccatcttacagatagggaaaccgaggccccacgtcaccata
atctggatggggtaggagcctagtcctctcctgagtcactcttggaagaa
cctggaggaacagagtcccacacttgggtaacaggcagagcaacatttgg
gactgcctccaaggggcatctactggccatgcacaccaggctactgccca
atccttgaagagcccccctccctgcttactacttcctcccctaagtccag
tctcttttctgctacagtttctaactgttctgcctgtatttttgtttgtt
tgtttgagataagatctctctcaagtcctggaactcagtgctaggagcct
gcgaaactgactttgcttttactctattgcagtctattctctcgagtttg
agttgtgtccagtaggtactcacagaagcagttttagcacctagcttctc
accaagctgttctgtgccggccatggtcatgtgatagcttcaacaatggc
aatggtttaatttccctggagcctcttctgcgggctgggaggttcaggac
atttttcttacacagacctctgccattaagcctttaatccagagttccat
acaatgacccactcgaagaaattaatttgccttaggttatcctttggcac
tggaggaggaatcttgcctgatgcggaactgcactaccaaacctctaagc
cacagtttgtcacactggaaatgggaagcctccccttcttcccacgtgcc
aggtccgccccattactctttgatctttgcaatgtcggcggccccattga
ccccgttgtgagttatgggggccgtgggacccgtaacccaacattcccgg
actcccagggtcggcaaggaccaccccgccacgtgatggatgagcgcctc
agggcttggctgctttgtccggattgggcttggctgattagcgcgcgcag
ccgttaaggacaggaagtgcaagagctgactctg
gaattcagttctctccttccacttttatgtggattccacagctcaaactc
aagtcgccaggcttatgtggcaagggcatttacccactacaccacctcac
tggccctcactttatttattgtttttgagacaaggtctgttggagttggt
ctggtgttgctatgtgttcaaattctaaatactgcacctcctcccctccc
caagatctggtttcccctgacaaggagatcctcacatataccaagtgata
gccgggcagtggtggcgcacgcctttaatcccagcacttgggaggcaaag
gcaggcagatttctgagttcaaggccagcctggtctacagagtgagttcc
aggacagccagggctacacagagaaaccttgtctcaaaaaacaaaaacaa
aaaaaccaaacaacaacaacaaaaacccaagcgatactatgtaaccttga
ttcccaagttaattggtcaataaaaggctaaagcctgtgtttgggcagta
gatagaggtaggcaggttttcagttccctagcttgacatcataggtaggg
ggaaaaaagataggacacagagagaggaagatgcggccatgacggagctc
aaccgtgagcgtatggccaggagaaacatcgaatatcaagggacattgca
taggatgtaagttagaattgttccaaagcctgcccaatctaggcttacag
tctgtaaataaaatacctggattatgtgtcttttatatgagctagctaga
ataaataattccttttacaaacatcgctcgatgaatctcgcttttctgtg
gatgctggggactcaaactcaagttctcatgctttcaaagtaggcatttc
actgacagatctctctccagccctggatcttttttatttttgggtggcag
ggtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147505610_147506697
seq2: B6Ng01-318P03.b_48_1131 (reverse)

seq1  CAGAGTCAGCTTCTTGCCACTCTCCTGTCCCTAACCGGCCTTGCGCGCGC  50
      |||||||||| ||||| |||| |||||||| ||| ||||  |||||||||
seq2  CAGAGTCAGC-TCTTG-CACT-TCCTGTCCTTAA-CGGC--TGCGCGCGC  44

seq1  TACTCAGCCCAGCCCAATCCGGACAAAGCCAGCC-AGCCCTGAGGCGGCT  99
      || |||||| |||||||||||||||||| ||||| ||||||||||| |||
seq2  TAATCAGCCAAGCCCAATCCGGACAAAG-CAGCCAAGCCCTGAGGC-GCT  92

seq1  CATCCATCACCGTGCGGGGT-GTCC-TGCCGACCCTGGGAGTCCGGGAAT  147
      ||||||||||   ||||||| |||| ||||||||||||||||||||||||
seq2  CATCCATCACGTGGCGGGGTGGTCCTTGCCGACCCTGGGAGTCCGGGAAT  142

seq1  GTTGGGTTACGGGTCCCACGGCCCCCATAACTCACAACGGGGTCAATGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTTACGGGTCCCACGGCCCCCATAACTCACAACGGGGTCAATGGG  192

seq1  GCCGCCGACATTGCAAAGATCAAAGAGTAATGGGGCGGACCTGGCACGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGACATTGCAAAGATCAAAGAGTAATGGGGCGGACCTGGCACGTG  242

seq1  GGAAGAAGGGGAGGCTT-CCATTTCCAGTGTGACAAACTGTGGCTTAGAG  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGGGAGGCTTCCCATTTCCAGTGTGACAAACTGTGGCTTAGAG  292

seq1  GTTTGGTAGTGCAGTTCCGCATCAGGCAAGATTCCTCCTCCAGTGCCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTAGTGCAGTTCCGCATCAGGCAAGATTCCTCCTCCAGTGCCAAA  342

seq1  GGATAACCTAAGGCAAATTAATTTCTTCGAGTGGGTCATTGTATGGAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCTAAGGCAAATTAATTTCTTCGAGTGGGTCATTGTATGGAACT  392

seq1  CTGGATTAAAGGCTTAATGGCAGAGGTCTGTGTAAGAAAAATGTCCTGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTAAAGGCTTAATGGCAGAGGTCTGTGTAAGAAAAATGTCCTGAA  442

seq1  CCTCCCAGCCCGCAGAAGAGGCTCCAGGGAAATTAAACCATTGCCATTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGCCCGCAGAAGAGGCTCCAGGGAAATTAAACCATTGCCATTGT  492

seq1  TGAAGCTATCACATGACCATGGCCGGCACAGAACAGCTTGGTGAGAAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTATCACATGACCATGGCCGGCACAGAACAGCTTGGTGAGAAGCT  542

seq1  AGGTGCTAAAACTGCTTCTGTGAGTACCTACTGGACACAACTCAAACTCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTAAAACTGCTTCTGTGAGTACCTACTGGACACAACTCAAACTCG  592

seq1  AGAGAATAGACTGCAATAGAGTAAAAGCAAAGTCAGTTTCGCAGGCTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGACTGCAATAGAGTAAAAGCAAAGTCAGTTTCGCAGGCTCCT  642

seq1  AGCACTGAGTTCCAGGACTTGAGAGAGATCTTATCTCAAACAAACAAACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGTTCCAGGACTTGAGAGAGATCTTATCTCAAACAAACAAACA  692

seq1  AAAATACAGGCAGAACAGTTAGAAACTGTAGCAGAAAAGAGACTGGACTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAGGCAGAACAGTTAGAAACTGTAGCAGAAAAGAGACTGGACTT  742

seq1  AGGGGAGGAAGTAGTAAGCAGGGAGGGGGGCTCTTCAAGGATTGGGCAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAAGTAGTAAGCAGGGAGGGGGGCTCTTCAAGGATTGGGCAGT  792

seq1  AGCCTGGTGTGCATGGCCAGTAGATGCCCCTTGGAGGCAGTCCCAAATGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTGTGCATGGCCAGTAGATGCCCCTTGGAGGCAGTCCCAAATGT  842

seq1  TGCTCTGCCTGTTACCCAAGTGTGGGACTCTGTTCCTCCAGGTTCTTCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCCTGTTACCCAAGTGTGGGACTCTGTTCCTCCAGGTTCTTCCA  892

seq1  AGAGTGACTCAGGAGAGGACTAGGCTCCTACCCCATCCAGATTATGGTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGACTCAGGAGAGGACTAGGCTCCTACCCCATCCAGATTATGGTGA  942

seq1  CGTGGGGCCTCGGTTTCCCTATCTGTAAGATGGGTCAGTTGATTGGCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGCCTCGGTTTCCCTATCTGTAAGATGGGTCAGTTGATTGGCCAA  992

seq1  AGCAGATCCAAATGTCCATCAGCAGATGAGAGTACAAACACACTGTGGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCCAAATGTCCATCAGCAGATGAGAGTACAAACACACTGTGGTC  1042

seq1  CTTCAGGAGAAGGGGATGTTAACTGGTCCTAAAAAGGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAGAAGGGGATGTTAACTGGTCCTAAAAAGGAATTC  1084

seq1: chr4_147370619_147371251
seq2: B6Ng01-318P03.g_68_700

seq1  GAATTCAGTTCTCTCCTTCCACTTTTATGTGGATTCCACAGCTCAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCTCCTTCCACTTTTATGTGGATTCCACAGCTCAAACTC  50

seq1  AAGTCGCCAGGCTTATGTGGCAAGGGCATTTACCCACTACACCACCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGCCAGGCTTATGTGGCAAGGGCATTTACCCACTACACCACCTCAC  100

seq1  TGGCCCTCACTTTATTTATTGTTTTTGAGACAAGGTCTGTTGGAGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCACTTTATTTATTGTTTTTGAGACAAGGTCTGTTGGAGTTGGT  150

seq1  CTGGTGTTGCTATGTGTTCAAATTCTAAATACTGCACCTCCTCCCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTGCTATGTGTTCAAATTCTAAATACTGCACCTCCTCCCCTCCC  200

seq1  CAAGATCTGGTTTCCCCTGACAAGGAGATCCTCACATATACCAAGTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTGGTTTCCCCTGACAAGGAGATCCTCACATATACCAAGTGATA  250

seq1  GCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAG  300

seq1  GCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCC  350

seq1  AGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCAAAAAACAAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCAAAAAACAAAAACAA  400

seq1  AAAAACCAAACAACAACAACAAAAACCCAAGCGATACTATGTAACCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAACAACAACAACAAAAACCCAAGCGATACTATGTAACCTTGA  450

seq1  TTCCCAAGTTAATTGGTCAATAAAAGGCTAAAGCCTGTGTTTGGGCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTTAATTGGTCAATAAAAGGCTAAAGCCTGTGTTTGGGCAGTA  500

seq1  GATAGAGGTAGGCAGGTTTTCAGTTCCCTAGCTTGACATCATAGGTAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGTAGGCAGGTTTTCAGTTCCCTAGCTTGACATCATAGGTAGGG  550

seq1  GGAAAAAAGATAGGACACAGAGAGAGGAAGATGCGGCCATGACGGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAGATAGGACACAGAGAGAGGAAGATGCGGCCATGACGGAGCTC  600

seq1  AACCGTGAGCGTATGGCCAGGAGAAACATCGAA  633
      |||||||||||||||||||||||||||||||||
seq2  AACCGTGAGCGTATGGCCAGGAGAAACATCGAA  633