BAC Information

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BAC

Clone NameB6Ng01-319A24
Chromosome4 (Build37)
Map Location 84,937,562 - 85,051,797
singlet/doubletdoublet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319A24.bB6Ng01-319A24.g
ACCGA108791GA108792
length1,1161,065
definitionB6Ng01-319A24.b B6Ng01-319A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,937,562 - 84,938,667)(85,050,725 - 85,051,797)
sequence
tatgtaagcttgtgatacaaagtgaagccaagcctcagcaattgtagcat
tgaagccagaggcgagcttcttgtgcctggggtccttagctttcttgtct
tcacatcatcctacgacagtcaagaatttgggaaaggagttttacattta
aatacactatattaaaacagattaacatttgaaaaagaaaacaatattga
ctttgattgccataaatatatactgtgtagaaaattgaagagtactcttt
tggaaggatttaaaacattgtccaaccattagtacaaaagacttttctcc
cccgtactgtattttccccttgatttcctcatttttcatagagaacagtg
atcatttggagaaagaattattcaaaatatttgggaacttttttttttgt
ttgaaacaaatttttagttttaaattgacttttaattttaaatgtaccga
ggtagggttattccaggaatcagacaaaaggcctggaggaatgctgcatc
cagaatcatcccccttccaaggatgcctgatcacctttgttactctcccc
tctccctctgcgtacttgttgtctttttcctgcccacttgtagattggtg
taggctgcccactaatagttcagcagaggcatctagaactaaaacacccc
tacccctcctttttctggagctgaggactaaaagcctttgcccttgctag
acaagtgctctgccattaaactaagccccaaaatgttcttataaaatgta
actagagtgattaaaaatttcaataagttcacaaattttaattttcttac
tagtcctaataatgacttttgtttttaaatttcctctctgctgagtccag
gattcattttatatgctgcatttaattgtctcttgagtttctatgaccat
catccaatatgtcattcttaaggaattgggttttccttgcttttctccgc
atgcttggaatcccttccaaactgtggccagcccttgattatactgaagt
aattgaagaaggtagctacagattgctgaacaattcttctgattgaagga
cagcagacgaaatgccagtctttgaattatcagtaaggctaccatggtta
tgtaagccgttttttg

gaattcttacagggactctcacagaacattgcaaggttccctgtggcagc
acctgggtgctggcactgccaaaactatatggtagaagaagtaagaatta
acccttatgcacaatttatgaataatatttttgcatatagtttatgcatg
ccattatgaatggaaaaagcttataagagtcactgacacatagtccccta
acaaataacatcctggtttctagtgtctgtcctatgtatggacacaggag
gtatgaactagcaggtcactgtggtaccacgggaagggagtaccatggat
ggatgggatgcaagcttttagaagcatgcgtactacgcccagaggcgaag
ggaagaactctccagacacagagcagggcaagctgcatgcatgctgaagc
aacccacatacacccaaggctgttagaatgcaggctggaagtgggctgag
ggacagatgggaccaatacaaaagcaagcactgccaaagttcccaagggt
actgaagttcgcagtttatcctctaaacgatgagaggggagaatgaacca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cgatttagaagttcactgaggaatggtggaaggaaaggactgtggaaggg
cgggcctgagatggggaggaaattttagaagtgaagaatcagaaagagga
ggggtccgaagcatggaaacgctgagaagtgactgggtagaaggtagaga
catgggctttttcatgatgaatccctctgcaaatatcctccccaagctgt
tgggtataattcttaaaagaggctcatgtccgtagactggaagaagccac
tgggtgctgtcttgagcttttatttttgtcagggctgaggctgagaaaac
ctcacctcagattcagatgtgtgggcgccgcgtagtggtcactttaggaa
ttacagtatgggacagcatttcccaaaggcatgatcaggactgggtgtga
tacttgtctgaagtgacaaacgccaccctggagttttgttgccttttcag
agacaaaaagtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84937562_84938667
seq2: B6Ng01-319A24.b_60_1175

seq1  TATGTAAGCTTGTGATACAAAGTGAAGCCAAGCCTCAGCAATTGTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCTTGTGATACAAAGTGAAGCCAAGCCTCAGCAATTGTAGCAT  50

seq1  TGAAGCCAGAGGCGAGCTTCTTGTGCCTGGGGTCCTTAGCTTTCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAGAGGCGAGCTTCTTGTGCCTGGGGTCCTTAGCTTTCTTGTCT  100

seq1  TCACATCATCCTACGACAGTCAAGAATTTGGGAAAGGAGTTTTACATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCATCCTACGACAGTCAAGAATTTGGGAAAGGAGTTTTACATTTA  150

seq1  AATACACTATATTAAAACAGATTAACATTTGAAAAAGAAAACAATATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTATATTAAAACAGATTAACATTTGAAAAAGAAAACAATATTGA  200

seq1  CTTTGATTGCCATAAATATATACTGTGTAGAAAATTGAAGAGTACTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTGCCATAAATATATACTGTGTAGAAAATTGAAGAGTACTCTTT  250

seq1  TGGAAGGATTTAAAACATTGTCCAACCATTAGTACAAAAGACTTTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGATTTAAAACATTGTCCAACCATTAGTACAAAAGACTTTTCTCC  300

seq1  CCCGTACTGTATTTTCCCCTTGATTTCCTCATTTTTCATAGAGAACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTACTGTATTTTCCCCTTGATTTCCTCATTTTTCATAGAGAACAGTG  350

seq1  ATCATTTGGAGAAAGAATTATTCAAAATATTTGGGAACTTTTTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGAGAAAGAATTATTCAAAATATTTGGGAACTTTTTTTTTTGT  400

seq1  TTGAAACAAATTTTTAGTTTTAAATTGACTTTTAATTTTAAATGTACCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAAATTTTTAGTTTTAAATTGACTTTTAATTTTAAATGTACCGA  450

seq1  GGTAGGGTTATTCCAGGAATCAGACAAAAGGCCTGGAGGAATGCTGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTTATTCCAGGAATCAGACAAAAGGCCTGGAGGAATGCTGCATC  500

seq1  CAGAATCATCCCCCTTCCAAGGATGCCTGATCACCTTTGTTACTCTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCATCCCCCTTCCAAGGATGCCTGATCACCTTTGTTACTCTCCCC  550

seq1  TCTCCCTCTGCGTACTTGTTGTCTTTTTCCTGCCCACTTGTAGATTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGCGTACTTGTTGTCTTTTTCCTGCCCACTTGTAGATTGGTG  600

seq1  TAGGCTGCCCACTAATAGTTCAGCAGAGGCATCTAGAACTAAAACACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCCCACTAATAGTTCAGCAGAGGCATCTAGAACTAAAACACCCC  650

seq1  TACCCCTCCTTTTTCTGGAGCTGAGGACTAAAAGCCTTTGCCCTTGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTCCTTTTTCTGGAGCTGAGGACTAAAAGCCTTTGCCCTTGCTAG  700

seq1  ACAAGTGCTCTGCCATTAAACTAAGCCCCAAAATGTTCTTATAAAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGCTCTGCCATTAAACTAAGCCCCAAAATGTTCTTATAAAATGTA  750

seq1  ACTAGAGTGATTAAAAATTTCAATAAGTTCACAAATTTTAATTTTCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTGATTAAAAATTTCAATAAGTTCACAAATTTTAATTTTCTTAC  800

seq1  TAGTCCTAATAATGACTTTTGTTTTT-AATTTCCTCTCTGCTGAGTCCAG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGTCCTAATAATGACTTTTGTTTTTAAATTTCCTCTCTGCTGAGTCCAG  850

seq1  GATTCATTTTATATGCTGCATTTAATTGTCTCTTGAGTTTCTATGACCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTTATATGCTGCATTTAATTGTCTCTTGAGTTTCTATGACCAT  900

seq1  CATCCAATATGTCA-TCTTAAGGAATT-GGTTTTCCTTGCTTTTCTCCGC  947
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  CATCCAATATGTCATTCTTAAGGAATTGGGTTTTCCTTGCTTTTCTCCGC  950

seq1  ATGCTTGG-ATCCC-TCCAAACTGTGGCCCAGGCCCTGATTATTACTG-A  994
      |||||||| ||||| |||||||||||| |||| || |||||| ||||| |
seq2  ATGCTTGGAATCCCTTCCAAACTGTGG-CCAGCCCTTGATTA-TACTGAA  998

seq1  GTAATTGAAG-AGGTAGCCACAGATTGCTGAACAATTC-TCTGA-TGAAG  1041
      |||||||||| ||||||| ||||||||||||||||||| ||||| |||||
seq2  GTAATTGAAGAAGGTAGCTACAGATTGCTGAACAATTCTTCTGATTGAAG  1048

seq1  GACAGCAGACGAATTCCCAGGTCTTGGATTTATCAGTAAGGCTACCATG-  1090
      ||||||||||||| | ||| ||||| || |||||||||||||||||||| 
seq2  GACAGCAGACGAAATGCCA-GTCTTTGAATTATCAGTAAGGCTACCATGG  1097

seq1  -TATGT-AGCC-TTTTTTG  1106
       ||||| |||| |||||||
seq2  TTATGTAAGCCGTTTTTTG  1116


seq1: chr4_85050725_85051797
seq2: B6Ng01-319A24.g_65_1129 (reverse)

seq1  AAACACTTTTTTGTTCCTCTGAAAAAGGCAACAAAACTCCAGGGTGGCGT  50
      |||||| |||||||  ||||| ||||||||||||||||||||||||||||
seq2  AAACAC-TTTTTGT--CTCTG-AAAAGGCAACAAAACTCCAGGGTGGCGT  46

seq1  TTGTCACTTTCAGACAAGTTATCAACACCCAGTCCCTGATCATGCCTTTG  100
      ||||||| |||||||||| |||| ||||||||| ||||||||||||||||
seq2  TTGTCAC-TTCAGACAAG-TATC-ACACCCAGT-CCTGATCATGCCTTTG  92

seq1  GG-AATGCTGTCCCATACTTGTAATTCCTAAAGTGACCACTACGCGGCGC  149
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGAAATGCTGTCCCATAC-TGTAATTCCTAAAGTGACCACTACGCGGCGC  141

seq1  CCACACATCTGAATCTGAGGTGAGGTTTTCTCAGCCTCAGCCCTGACAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATCTGAATCTGAGGTGAGGTTTTCTCAGCCTCAGCCCTGACAAA  191

seq1  AATAAAAGCTCAAGACAGCACCCAGTGGCTTCTTCCAGTCTACGGACATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCTCAAGACAGCACCCAGTGGCTTCTTCCAGTCTACGGACATG  241

seq1  AGCCTCTTTTAAGAATTATACCCAACAGCTTGGGGAGGATATTTGCAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTTTAAGAATTATACCCAACAGCTTGGGGAGGATATTTGCAGAG  291

seq1  GGATTCATCATGAAAAAGCCCATGTCTCTACCTTCTACCCAGTCACTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATCATGAAAAAGCCCATGTCTCTACCTTCTACCCAGTCACTTCT  341

seq1  CAGCGTTTCCATGCTTCGGACCCCTCCTCTTTCTGATTCTTCACTTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTTCCATGCTTCGGACCCCTCCTCTTTCTGATTCTTCACTTCTAA  391

seq1  AATTTCCTCCCCATCTCAGGCCCGCCCTTCCACAGTCCTTTCCTTCCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTCCCCATCTCAGGCCCGCCCTTCCACAGTCCTTTCCTTCCACC  441

seq1  ATTCCTCAGTGAACTTCTAAATCGTGTGTGTGTGTGTGTGTGTGTGTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAGTGAACTTCTAAATCGTGTGTGTGTGTGTGTGTGTGTGTGTG  491

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGGTTCATTCTCCCCTCTCATCGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGGTTCATTCTCCCCTCTCATCGTTT  541

seq1  AGAGGATAAACTGCGAACTTCAGTACCCTTGGGAACTTTGGCAGTGCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATAAACTGCGAACTTCAGTACCCTTGGGAACTTTGGCAGTGCTTG  591

seq1  CTTTTGTATTGGTCCCATCTGTCCCTCAGCCCACTTCCAGCCTGCATTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTATTGGTCCCATCTGTCCCTCAGCCCACTTCCAGCCTGCATTCT  641

seq1  AACAGCCTTGGGTGTATGTGGGTTGCTTCAGCATGCATGCAGCTTGCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTGGGTGTATGTGGGTTGCTTCAGCATGCATGCAGCTTGCCCT  691

seq1  GCTCTGTGTCTGGAGAGTTCTTCCCTTCGCCTCTGGGCGTAGTACGCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTCTGGAGAGTTCTTCCCTTCGCCTCTGGGCGTAGTACGCATG  741

seq1  CTTCTAAAAGCTTGCATCCCATCCATCCATGGTACTCCCTTCCCGTGGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAAGCTTGCATCCCATCCATCCATGGTACTCCCTTCCCGTGGTA  791

seq1  CCACAGTGACCTGCTAGTTCATACCTCCTGTGTCCATACATAGGACAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGACCTGCTAGTTCATACCTCCTGTGTCCATACATAGGACAGAC  841

seq1  ACTAGAAACCAGGATGTTATTTGTTAGGGGACTATGTGTCAGTGACTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAACCAGGATGTTATTTGTTAGGGGACTATGTGTCAGTGACTCTT  891

seq1  ATAAGCTTTTTCCATTCATAATGGCATGCATAAACTATATGCAAAAATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTTTTCCATTCATAATGGCATGCATAAACTATATGCAAAAATAT  941

seq1  TATTCATAAATTGTGCATAAGGGTTAATTCTTACTTCTTCTACCATATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAAATTGTGCATAAGGGTTAATTCTTACTTCTTCTACCATATAG  991

seq1  TTTTGGCAGTGCCAGCACCCAGGTGCTGCCACAGGGAACCTTGCAATGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGTGCCAGCACCCAGGTGCTGCCACAGGGAACCTTGCAATGTT  1041

seq1  CTGTGAGAGTCCCTGTAAGAATTC  1073
      ||||||||||||||||||||||||
seq2  CTGTGAGAGTCCCTGTAAGAATTC  1065


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