BAC Information

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BAC

Clone NameB6Ng01-319C17
Chromosome4 (Build37)
Map Location 142,963,063 - 142,964,135
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38
Downstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319C17.bB6Ng01-319C17.g
ACCGA108869GA108870
length1,0631,157
definitionB6Ng01-319C17.b B6Ng01-319C17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagatcaggctggcctcgaactcagaaatcctcctgcc
tctgccccccaagtgctgggactaaagtcgtgcaccaccatgccccgcct
tcaatcactcctttacttgcaagcatcatgggctgacttcttatctggtt
tccaaggcaacctcagcacgttcaaggctctgacccttgaaggaaggtag
ccttctgcagagcagaccacacaggcaaactgaagttgatcatcacatga
gattaggtgatgtttgaactcttgtttgtatatcacagttagcaacgagt
ccttaactggggagagtaagcctgaaggggctttgctgcatttgggcata
atattgtaatagtctcctctgcacagtcttaggggacatcctgttggttt
ttaagctgtgaagcctcttggagagaagattccttccctgggagatacgt
aaacaacattcaccagtgacaaactcaggtaggaggtacaattccaccaa
agctcactgcgataacagagttgattgggctttgttaccaagtaacgagt
gattggttacttgtgggagcatgggtgaccttaaagcagccacaatggga
gactctaccaccagcagggatgacatcttcccatggatgtacagacagag
ttctgcccctagtcctttcccacttttatccccaaaccttgaggccactt
gcaatgagagcagaatcacatgcaactggttgggagggcagccgggtcct
caggagaggctctcgtgaccctcgctgcctattccttctatgagaaaatg
tccacaggcaataaagccctgctgtgatttttcttttgcaagtgggccca
gcagaacccatgaagatggcagcggtttggcccagaggatagtcctgtac
tactggggttgtccacctccttccatctcagtccctttgcatagtcctag
cttgtccagaggagtgaggctattctactgactccctctgtatgctcatt
ccctaaaccattgctcccactggcacccagtctcacctcaaattaactca
tcgaggggctctc
gaattcactttaatttttaaatttttattttaatttgtttctaattaggc
acctgatattttgtgtttcagtgtgcagatgacttaggtgttcccagaca
ctagaggaaaatgtcagacacctggaattggagatacaggtggctatgag
tactgggaatcaaacactctcaggaagagcagcaagcattcttagcctct
gagccatgtctccaagagaatccatatagcattttggatagggtcccatg
aagcataagattacaaaggctctccaagaaaagaacatggtgggtcatta
tttactctgaaagatctgggaggaggaaggggcagacacaaggggacaca
agattattgggccaggataagctcaatacacaagggtgatgttgtcagag
acttcagtaaaagaaaaattgtggggccgtgaaaggcagcctgctttagt
tgaatgaggcttgctccagtgacccagtagagacccagtaggaaactcta
caagggacagaacagtgagccacattcccagagacaggtgcctgacacaa
cagagccccccaactccataattctgtgactatcagtcacgaagacaatg
gcccaagcttctggcattcggtctagactccacccccacagttacctgac
tatagctaggtatgctcctccctacagttacctggcaacagcaagatagc
ccagcccactataaaagggctgcttggccctctcctctctctctttaaga
tctctcctttcttactctcatctctagtcctccttctctctctcccttcc
cttctctcttcacatggacatgaccagcctctctctttctactttctctc
tttctccctgcctttctacaataaagctctaagtccatagactgtctctg
cccatcaagggcctgttgtgcttgaacaatgggataggctttcccctaag
aaccatgtctaaccttccttcctgcgctccagtctcacaggaccaagact
ctcagccttgtgggaacacccagcaccccttctctcctgttttctccttc
cttcatccttggggctgacttgactggctcctaggattccctcaattttt
ttctacctcttcttgtgatttacagagtgttcctgcatggttccaagaca
cttgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142963063_142964135
seq2: B6Ng01-319C17.b_48_1110

seq1  GAATTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCC  50

seq1  TCTGCCCCCCAAGTGCTGGGACTAAAGTCGTGCACCACCATGCCCCGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCCAAGTGCTGGGACTAAAGTCGTGCACCACCATGCCCCGCCT  100

seq1  TCAATCACTCCTTTACTTGCAAGCATCATGGGCTGACTTCTTATCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCACTCCTTTACTTGCAAGCATCATGGGCTGACTTCTTATCTGGTT  150

seq1  TCCAAGGCAACCTCAGCACGTTCAAGGCTCTGACCCTTGAAGGAAGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCAACCTCAGCACGTTCAAGGCTCTGACCCTTGAAGGAAGGTAG  200

seq1  CCTTCTGCAGAGCAGACCACACAGGCAAACTGAAGTTGATCATCACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCAGAGCAGACCACACAGGCAAACTGAAGTTGATCATCACATGA  250

seq1  GATTAGGTGATGTTTGAACTCTTGTTTGTATATCACAGTTAGCAACGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTGATGTTTGAACTCTTGTTTGTATATCACAGTTAGCAACGAGT  300

seq1  CCTTAACTGGGGAGAGTAAGCCTGAAGGGGCTTTGCTGCATTTGGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTGGGGAGAGTAAGCCTGAAGGGGCTTTGCTGCATTTGGGCATA  350

seq1  ATATTGTAATAGTCTCCTCTGCACAGTCTTAGGGGACATCCTGTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAATAGTCTCCTCTGCACAGTCTTAGGGGACATCCTGTTGGTTT  400

seq1  TTAAGCTGTGAAGCCTCTTGGAGAGAAGATTCCTTCCCTGGGAGATACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGTGAAGCCTCTTGGAGAGAAGATTCCTTCCCTGGGAGATACGT  450

seq1  AAACAACATTCACCAGTGACAAACTCAGGTAGGAGGTACAATTCCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATTCACCAGTGACAAACTCAGGTAGGAGGTACAATTCCACCAA  500

seq1  AGCTCACTGCGATAACAGAGTTGATTGGGCTTTGTTACCAAGTAACGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTGCGATAACAGAGTTGATTGGGCTTTGTTACCAAGTAACGAGT  550

seq1  GATTGGTTACTTGTGGGAGCATGGGTGACCTTAAAGCAGCCACAATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTACTTGTGGGAGCATGGGTGACCTTAAAGCAGCCACAATGGGA  600

seq1  GACTCTACCACCAGCAGGGATGACATCTTCCCATGGATGTACAGACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACCACCAGCAGGGATGACATCTTCCCATGGATGTACAGACAGAG  650

seq1  TTCTGCCCCTAGTCCTTTCCCACTTTTATCCCCAAACCTTGAGGCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCCTAGTCCTTTCCCACTTTTATCCCCAAACCTTGAGGCCACTT  700

seq1  GCAATGAGAGCAGAATCACATGCAACTGGTTGGGAGGGCAGCCGGGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGAGCAGAATCACATGCAACTGGTTGGGAGGGCAGCCGGGTCCT  750

seq1  CAGGAGAGGCTCTCGTGACCCTCGCTGCCTATTCCTTCTATGAGAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGCTCTCGTGACCCTCGCTGCCTATTCCTTCTATGAGAAAATG  800

seq1  TCCACAGGCAATAAAGCCCTGCTGTGATTTTTCTTTTGCAAGTGGGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGCAATAAAGCCCTGCTGTGATTTTTCTTTTGCAAGTGGGCCCA  850

seq1  GCAGAACCCATGAAGATGGCAGCGGTTTGGCCCAGAGGATAGTCCTGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCCATGAAGATGGCAGCGGTTTGGCCCAGAGGATAGTCCTGTAC  900

seq1  TACTGGGGTTGTCCAACCTCCTTCCATCTCAGGTCCCTTGCATAGTCCTA  950
      |||||||||||||| |||||||||||||||||  || |||||||||||||
seq2  TACTGGGGTTGTCC-ACCTCCTTCCATCTCAGTCCCTTTGCATAGTCCTA  949

seq1  GCTTGTCCCAGAGGAGGTTGAGGCTATTCTACCTGACTCCCTCTGTATGC  1000
      |||||| |||||||||  ||||||||||||| ||||||||||||||||||
seq2  GCTTGT-CCAGAGGAG--TGAGGCTATTCTA-CTGACTCCCTCTGTATGC  995

seq1  TCATTCCCTAAACCATTGCTCCCACTTGGCACCCAAGTCTCACCTCAATA  1050
      ||||||||||||||||||||||||| |||||||| ||||||||||||| |
seq2  TCATTCCCTAAACCATTGCTCCCAC-TGGCACCC-AGTCTCACCTCAA-A  1042

seq1  TTACCTCATCAGAGGGGCCTCTC  1073
      ||| |||||| |||||| |||||
seq2  TTAACTCATC-GAGGGG-CTCTC  1063