BAC Information

Click to search

BAC

Clone NameB6Ng01-319F16
Chromosome4 (Build37)
Map Location 54,492,535 - 54,493,675
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319F16.bB6Ng01-319F16.g
ACCGA109005GA109006
length1,136991
definitionB6Ng01-319F16.b B6Ng01-319F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaacagatacatctgctcctcaaacatacacttgtcccaacct
cagcacatggctgctgtaccagcattcagagaagagaggcctttgggatc
aacccacttggaagagcaatgtacttttggcagccaacctccctcccatc
cctgtctccacacaatccctttatcactcacctctttctgaagcaaatag
gtcttaagcaaattcttttcatgattagatattgtccctaaaggctgaaa
agtaggtcacttatatctgtgagttctagttccattccacctacctaatt
aaccaactctaatctagcattttttctgggtgcccagccctaggccatgc
tatgaggtgtatattctagaggtcttgtgctccagaatctcccactgcag
tagacagataagatacaagaataactagttatgatgttgtaatcctagag
atgaacatcacatagaaactctatttggaacagtgtagaaatgttagagg
agatcgtccatgtaaggcctcacagatgggatgatgcttcggatgacctg
gaaaactcccgaagctccacatgtggccctggtccatggtattcaggtag
atgaagagcataataaacagatgcccagagactgcttttagcagcctggg
caaagaaggagcaagagtgaaggtagcgatgtaaagccgtgtctgaaggc
agtaaggagtgggtgctggatgtttctgccattctgacactgacatttga
gagcttgattgggttcctggctattctttagagtagctggggtaatcttt
gaggctggcgcaaggctgaatgtttctatctttgtgtagtctttcttccc
tttgatgagtccccgggcgtgtgaaatccacctcctttcttggtactgtt
atcaaacctcatacttgtattcaaaatggggtcaaaaaagagagagaagc
aaagggcattgatttgtatgttccagtcatttccttggggacacgctgag
cttcactctgggggtgactgagaaagagactctgtctgtgattagatctg
tcagcagtgctgtgttacactacgtacctggggaataaatcatggtcatt
gcatgtctgcatggcctagagagccttgtcttgctg

gaattctttgtttagctctgcaccccatttttattgggttatttgaatat
ctggattccagctttttgagctctttgtatatattggatattagtcccct
atgagatttaggattggtaaaaatcctttcccaatctgttggtggccttt
ttgtcttattgacagtgtcttttgctttacagaagctttgcaattttatg
aggtcccatttgtcaattcttgatcttacagcacaaaccattgatgttct
gtttaggaattttttcttctgtgcccatatcttcgaggcttttccccact
ttctcctctataaatttcagtgtctctggttttatgtggaggtctttgat
ccacttagacttagtacaaggagataagaatggatcaatttgcattcttc
tacatgataaccaccagttgtgcctgcaccatttgttgaaaatgctgtca
ttttcccactggatggttttagctcccttgtcaaagatcaagtgaccata
ggtgtgtggattcatttctgggtcttcaattctattccattggtttacct
gtctgtcgttgtaccagtaccatgcattttttttatcacaattgctctgt
agtacagcttagggtcaggcatggttcttttatcattgagaatagttttt
gctatcctaggtttttattaatgaatctatttttttaaaaagctgtcttt
gtgttttttactttaagtctatgagtgttctgcctgcatgtccggatgtg
catcacatgcatacctacctgaccttggaaggtatcagaccctctgggac
tggagttgcaggcagctgtgaaccagcatgtgggtgctgggaaattaaac
cccactactctgcaagagcaacaagtgctgctcttaactgttgagccatc
tctccagccccatgaatctgtttctctgcaatcatactaacctttattgc
aaggctgctgcattcctttgggtatggatttatcttttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54492535_54493675
seq2: B6Ng01-319F16.b_47_1182

seq1  GAATTCCAAACAGATACATCTGCTCCTCAAACATACACTTGTCCCAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAGATACATCTGCTCCTCAAACATACACTTGTCCCAACCT  50

seq1  CAGCACATGGCTGCTGTACCAGCATTCAGAGAAGAGAGGCCTTTGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATGGCTGCTGTACCAGCATTCAGAGAAGAGAGGCCTTTGGGATC  100

seq1  AACCCACTTGGAAGAGCAATGTACTTTTGGCAGCCAACCTCCCTCCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACTTGGAAGAGCAATGTACTTTTGGCAGCCAACCTCCCTCCCATC  150

seq1  CCTGTCTCCACACAATCCCTTTATCACTCACCTCTTTCTGAAGCAAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCACACAATCCCTTTATCACTCACCTCTTTCTGAAGCAAATAG  200

seq1  GTCTTAAGCAAATTCTTTTCATGATTAGATATTGTCCCTAAAGGCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGCAAATTCTTTTCATGATTAGATATTGTCCCTAAAGGCTGAAA  250

seq1  AGTAGGTCACTTATATCTGTGAGTTCTAGTTCCATTCCACCTACCTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTCACTTATATCTGTGAGTTCTAGTTCCATTCCACCTACCTAATT  300

seq1  AACCAACTCTAATCTAGCATTTTTTCTGGGTGCCCAGCCCTAGGCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCTAATCTAGCATTTTTTCTGGGTGCCCAGCCCTAGGCCATGC  350

seq1  TATGAGGTGTATATTCTAGAGGTCTTGTGCTCCAGAATCTCCCACTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTGTATATTCTAGAGGTCTTGTGCTCCAGAATCTCCCACTGCAG  400

seq1  TAGACAGATAAGATACAAGAATAACTAGTTATGATGTTGTAATCCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGATAAGATACAAGAATAACTAGTTATGATGTTGTAATCCTAGAG  450

seq1  ATGAACATCACATAGAAACTCTATTTGGAACAGTGTAGAAATGTTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCACATAGAAACTCTATTTGGAACAGTGTAGAAATGTTAGAGG  500

seq1  AGATCGTCCATGTAAGGCCTCACAGATGGGATGATGCTTCGGATGACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGTCCATGTAAGGCCTCACAGATGGGATGATGCTTCGGATGACCTG  550

seq1  GAAAACTCCCGAAGCTCCACATGTGGCCCTGGTCCATGGTATTCAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCCGAAGCTCCACATGTGGCCCTGGTCCATGGTATTCAGGTAG  600

seq1  ATGAAGAGCATAATAAACAGATGCCCAGAGACTGCTTTTAGCAGCCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGCATAATAAACAGATGCCCAGAGACTGCTTTTAGCAGCCTGGG  650

seq1  CAAAGAAGGAGCAAGAGTGAAGGTAGCGATGTAAAGCCGTGTCTGAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGAGCAAGAGTGAAGGTAGCGATGTAAAGCCGTGTCTGAAGGC  700

seq1  AGTAAGGAGTGGGTGCTGGATGTTTCTGCCATTCTGACACTGACATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAGTGGGTGCTGGATGTTTCTGCCATTCTGACACTGACATTTGA  750

seq1  GAGCTTGATTGGGTTCCTGGCTATTCTTTAGAGTAGCTGGGGTAATCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGATTGGGTTCCTGGCTATTCTTTAGAGTAGCTGGGGTAATCTTT  800

seq1  GAGGCTGGCGCAAGGCTGAATGTTTCTATCTTTGTGTAGTCTTTCTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGCGCAAGGCTGAATGTTTCTATCTTTGTGTAGTCTTTCTTCCC  850

seq1  TTTGATGAGTCCCCGGGCGTGTGAAATCCACCTCCTTTCTTGGTACTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGAGTCCCCGGGCGTGTGAAATCCACCTCCTTTCTTGGTACTGTT  900

seq1  ATCAAACCTCATACTTGTATTCAAAATGGGGTCAAAAAAAGAGAGAGAAG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCAAACCTCATACTTGTATTCAAAATGGGGTC-AAAAAAGAGAGAGAAG  949

seq1  CAAAGGGCAATTGATTTGTATGTTCCAGTCATTTCCTTGGGAACACGCTG  1000
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  CAAAGGGC-ATTGATTTGTATGTTCCAGTCATTTCCTTGGGGACACGCTG  998

seq1  AGCTTTCACTCT-GGGGTGACTGAGAAAGAGACTCTGTCTGTGATTAGAT  1049
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGC-TTCACTCTGGGGGTGACTGAGAAAGAGACTCTGTCTGTGATTAGAT  1047

seq1  CTGTCAGGCAGTGGCTGTGTTACACTACGTACCTGGGGAAATAAAACCAT  1099
      |||||| ||||| |||||||||||||||||||||||||||   ||| |||
seq2  CTGTCA-GCAGT-GCTGTGTTACACTACGTACCTGGGGAA--TAAATCAT  1093

seq1  GGGCAATTGCCAGTGTCTGCAT-GCCCAGAGAGC--TGTC-TGCTG  1141
      || | |||||   ||||||||| ||| |||||||  |||| |||||
seq2  GGTC-ATTGC--ATGTCTGCATGGCCTAGAGAGCCTTGTCTTGCTG  1136


| Home | SequenceCutter | Blast | Download |