BAC Information

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BAC

Clone NameB6Ng01-320E02
Chromosome4 (Build37)
Map Location 6,362,828 - 6,363,950
singlet/doubletsinglet
Overlap geneNsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320E02.bB6Ng01-320E02.g
ACCGA109671GA109672
length1,1161,169
definitionB6Ng01-320E02.b B6Ng01-320E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagttttaaggaaagcaaagattcatgaactatcttcaactcca
tatttaatgctccaggtgcaatcagctcctgccatgtgcttcgtgggggg
cgctgttattaaccctggctctgtgtgcacagtgtgtatttcttagtaca
tcctgagcttattgcaggccttccatagctgggaaggaaagggtactttt
tctagttcgaattagtgatgaatgttacagaggaagtggaggcagggcgg
gagtggggcaggttagggactgctgcggtgctgttttagataaacaggct
aggagacacaggagctggtcagtcagaagattcagagcagagcgagtact
acaggaagactggggtaggagcagggccactgctgtggggagctctgacc
cagcggaaggctggagagtcagagcagataaggaaaccaccgggagctgg
aagagagcggctctgacctggtttgtgtgtgtttgcagtctttctgatga
tggtccagagtggagccatgagagtctgggggcaccaaaaccctggtgct
ttgtttaggtcaggatggtgagagtgagtctgcagaaaagcctggcaatg
cacacaaaacaggacaacccagaaagacttctgaccagctggatcgggct
accttttactgaaataaaaggccagggctggggcacatggggaggaaaag
cttgctggagatttgatgaatggggtgtatgtagacctccccgagacttg
gagcagacgccagggtgttcttgtctaggtttcatgaggctgaagccaga
aagataaaggaagagttggggtttctaaggaacttcaagtcctggggcag
ggtagaacttcccatggcagccacagaggctagacaattgattatgaggt
ttggtgacctggaggtctcagaaggagtggcttcagtagtttagtggata
aagggtggctaaagggcccaaagaagttacaaatactctagcaagagttc
ttgctacacaacgtcagacaatggccagagatggtgtgataccatcaatg
ttgctacctgttgaaatgggagaggttgccattctagctctctcgaagca
atagtgaacacacagg
gaattctcacctgaggaataccgaattgtcgcgcccgctctcgaccagca
agaacgacgcgaccaccagtccttctaacagcagtttattcagtcttcat
ctttcttctttctcttcatcagtaccgttccccagctgaagagttctgaa
tccacgccagatccttctcaacagtctgtttcacaggaacctttattaac
cccttcttccccgttatgcagttctgaatcctccctgtagcagggggtct
tcgctcttgcctgaagatgtttcttgtcccgggtttcggcaccacttgtt
gcgcgcactcaacaggccaggaagaacgacgctgctacaggatccttctg
cacacatttattcagtcctgtttcttctttctccatatatctcccttgtt
tatatctcccctgtttatatctcccttgtttttatatctcccttgtttat
atatctcccttgtttttatatctcccccgaaccctgggcctctcactctt
ttatactctcagttcccatccacgcacagcaggccacgccacctcaccag
gcacgcagcttcagctaatcagggcagcaggggcaaatctccaccaaatt
ggattcacctgtatcctggtacacctgcgcagcactcaagatgtttgtgt
cttatatgaggaagtcaggtgcaagtcatatgacttagctgcagtccctg
gcgcctttgggactgccgccacacccgctccccacaccgaatggctgaga
agcacctgaaaaaatgttcaacatccttaattatcagggaaatgcaaatg
aaaactaccctgagattccacctcacaccagtcagaatggttaagataaa
aaattcatgtgacagcagatgctggcgaagatgtggagaaagaggaacac
tcctccattgttggtgggattgcaagcttgtacaaccactctggaatcag
tcttgcagtttctcagaaattggacatagtactaccgaaggatcccgcat
acttttcctgggcatatatgcagagatgttccactggtagacgaccacat
gctccactatgttcatagcaggcttatttataataacagagctgaggacc
ccagaatgtccctcacgagaatggctacaggaagtgtggtacacttacac
caatgggagatactattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6362828_6363950
seq2: B6Ng01-320E02.b_46_1161 (reverse)

seq1  CCTGTGTGTTCACTAACTGCTCTGAGGAGAGCTAGAATGGCACCCTCTTC  50
      |||||||||||||| | ||||  || |||||||||||||||| ||||| |
seq2  CCTGTGTGTTCACT-ATTGCTTCGA-GAGAGCTAGAATGGCAACCTCTCC  48

seq1  CATTTCAAACAGGTAGCCACATTGATGGTATCACACCATCCTCTGGCCAT  100
      |||||| |||||||||| ||||||||||||||||||||| ||||||||| 
seq2  CATTTC-AACAGGTAGCAACATTGATGGTATCACACCAT-CTCTGGCCA-  95

seq1  TTGTCTGACCGTTGTGTAGCAAG-ACTCTTTGCTAGAGTTATTTGTAACT  149
      |||||||| |||||||||||||| |||| ||||||||| |||||||||||
seq2  TTGTCTGA-CGTTGTGTAGCAAGAACTC-TTGCTAGAG-TATTTGTAACT  142

seq1  TCTTTGGGCCC-TTAGCCACCCTTTATCCCACTAAACTACTGAAGCCACT  198
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TCTTTGGGCCCTTTAGCCACCCTTTAT-CCACTAAACTACTGAAGCCACT  191

seq1  CCTTCTGAGACCTCCAGGTCACCAAACCTCATAATCAATTGTCTAGCCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAGACCTCCAGGTCACCAAACCTCATAATCAATTGTCTAGCCTC  241

seq1  TGTGGCTGCCATGGGAAGTTCTACCCTGCCCCAGGACTTGAAGTTCCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCCATGGGAAGTTCTACCCTGCCCCAGGACTTGAAGTTCCTTA  291

seq1  GAAACCCCAACTCTTCCTTTATCTTTCTGGCTTCAGCCTCATGAAACCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCAACTCTTCCTTTATCTTTCTGGCTTCAGCCTCATGAAACCTA  341

seq1  GACAAGAACACCCTGGCGTCTGCTCCAAGTCTCGGGGAGGTCTACATACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAACACCCTGGCGTCTGCTCCAAGTCTCGGGGAGGTCTACATACA  391

seq1  CCCCATTCATCAAATCTCCAGCAAGCTTTTCCTCCCCATGTGCCCCAGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCATCAAATCTCCAGCAAGCTTTTCCTCCCCATGTGCCCCAGCC  441

seq1  CTGGCCTTTTATTTCAGTAAAAGGTAGCCCGATCCAGCTGGTCAGAAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTTTATTTCAGTAAAAGGTAGCCCGATCCAGCTGGTCAGAAGTC  491

seq1  TTTCTGGGTTGTCCTGTTTTGTGTGCATTGCCAGGCTTTTCTGCAGACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTTGTCCTGTTTTGTGTGCATTGCCAGGCTTTTCTGCAGACTC  541

seq1  ACTCTCACCATCCTGACCTAAACAAAGCACCAGGGTTTTGGTGCCCCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACCATCCTGACCTAAACAAAGCACCAGGGTTTTGGTGCCCCCAG  591

seq1  ACTCTCATGGCTCCACTCTGGACCATCATCAGAAAGACTGCAAACACACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGGCTCCACTCTGGACCATCATCAGAAAGACTGCAAACACACA  641

seq1  CAAACCAGGTCAGAGCCGCTCTCTTCCAGCTCCCGGTGGTTTCCTTATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGGTCAGAGCCGCTCTCTTCCAGCTCCCGGTGGTTTCCTTATCT  691

seq1  GCTCTGACTCTCCAGCCTTCCGCTGGGTCAGAGCTCCCCACAGCAGTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTCTCCAGCCTTCCGCTGGGTCAGAGCTCCCCACAGCAGTGGC  741

seq1  CCTGCTCCTACCCCAGTCTTCCTGTAGTACTCGCTCTGCTCTGAATCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCTACCCCAGTCTTCCTGTAGTACTCGCTCTGCTCTGAATCTTC  791

seq1  TGACTGACCAGCTCCTGTGTCTCCTAGCCTGTTTATCTAAAACAGCACCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACCAGCTCCTGTGTCTCCTAGCCTGTTTATCTAAAACAGCACCG  841

seq1  CAGCAGTCCCTAACCTGCCCCACTCCCGCCCTGCCTCCACTTCCTCTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCCCTAACCTGCCCCACTCCCGCCCTGCCTCCACTTCCTCTGTA  891

seq1  ACATTCATCACTAATTCGAACTAGAAAAAGTACCCTTTCCTTCCCAGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATCACTAATTCGAACTAGAAAAAGTACCCTTTCCTTCCCAGCTA  941

seq1  TGGAAGGCCTGCAATAAGCTCAGGATGTACTAAGAAATACACACTGTGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCCTGCAATAAGCTCAGGATGTACTAAGAAATACACACTGTGCA  991

seq1  CACAGAGCCAGGGTTAATAACAGCGCCCCCCACGAAGCACATGGCAGGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCCAGGGTTAATAACAGCGCCCCCCACGAAGCACATGGCAGGAG  1041

seq1  CTGATTGCACCTGGAGCATTAAATATGGAGTTGAAGATAGTTCATGAATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGCACCTGGAGCATTAAATATGGAGTTGAAGATAGTTCATGAATC  1091

seq1  TTTGCTTTCCTTAAAACTGGAATTC  1123
      |||||||||||||||||||||||||
seq2  TTTGCTTTCCTTAAAACTGGAATTC  1116