BAC Information

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BAC

Clone NameB6Ng01-321H24
Chromosome4 (Build37)
Map Location 67,741,612 - 67,825,090
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321H24.bB6Ng01-321H24.g
ACCGA110586GA110587
length1,1371,089
definitionB6Ng01-321H24.b B6Ng01-321H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,741,612 - 67,742,746)(67,824,008 - 67,825,090)
sequence
gaattctatagaaacatagacatatgtaacaagaccttatggagtgtacg
cttcaggaattcctgaggttgccttagtaatgtggtcaagaggttatgcg
tttttccaggatttttaaatggacaatagtctattatgtagcaagtcatg
actgcagccttcttgcacttttccttcattacacattgttctttagttag
tgtctattggtaccgacatttggtgacctagcttcaatgagattttagtt
gggtctctaatgcataggacttgtgacaagattttacatagctaaattgc
tcttaatcaaaagtcctagataatggaaggaagagctcaggttcaagagg
agtaagtcagcctcaactttaaataatcccaattctaggctttggatccc
ctgtatgtttagagagatgcgaaggacatgggtttccagtgcggaaaagt
aagttcacatcgcttaatccatctgcaaatatttaccatgcatttccatc
ctccaatgctgtctttgagatgtttctagtctcttaatctttttcttcca
catttgcatgtatgtacgaaatgtttcctatgtgtgtgcatatgtgtgta
aatgttcaagagtggggaggtgtgcatttgtctctatgcaccagccacag
tgtggatttgaggaacagagggcaagccagttctccctgtctactttgtc
tgaatcggggtgtggttgttattgttgcttgcatctacttacaccttgct
atctgtctgagagtttcttgggagtgtcttgtctcatctttccattttgt
cactataacactagtattacagacatgtgctaccctactcagcttgatgt
aggttctaggaattcagattgggagttctcatgtttgcactgtctggggc
attatatagagagactgtcaccaacactcatcacctagttttgacttctc
tggccccttctgcataatttcatctatgcttctcctctctacatttgtgt
ctgtgccattatttacttaattacaaaaatggtggaatatctctgtatat
tctttttttcttttaattagaatatttccttatatacatttcaaatgcta
ttcccgaagtcatctaagtatattcttatttaacttc

gaattcactctacttttatatatgggagctttttcctacactgtatccag
tgttttcctctggtattttcatttctgggaagattctaagaaccacttac
atagggtaagccaaaggtgttgcagtcaaattcatgtgctgctcctcaaa
tttcagcaatgttgttgaatattaaggatgcttgatgtaaattatctaaa
gtggttattagacatgcaagcatctcagtggtgcaggacataggcttttc
ctattccatatattcagaggccataaaaggagtcatcaggggcaatgaag
aaagagctatactcagtccatgagtttccgggggaacttgcttagccaac
atggacaacttgtctacttgaaatcaactttctcagctggagccactgga
atgatgtttaggctttggaattatttcttccatgtttcatagccaagcca
cttttaaaaactgatcaaccatgtaggtcaatactttttttttttcgcaa
tatttatcctgggtagtatatagttaactctctacatataaactaaattt
ggataatcattcagagttgaattgcatcagcctctgttttctctgatgct
aatagtgttatgcatattaggagagaaagtaaacaaacaaaaaaccaaca
ccagtacagcactacaggtataagtaaatggtacagcactagagtacaat
actcaggatcctgattttattctttaaagacagtagctacaataacaaag
tctgatatgtgctgcttagagacaataagttttgttctgattcagtttcc
agccatttctcctcttcagaagtttcttctctaatggttgtagagagtta
atttttccatacaaaattagtctgaaatttttcaaagattcttttcctac
taatccttgtccatttttcctatctggtgctttcccttattgcttcctaa
aacaacaacacattcaaaacaaccaaaacaggttgcctgcttcttgcttg
cttttgtggaacctgacaattgtcttgctcatgattttttctctgcacca
catagctttatcacacactttgcttcaatcattttaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67741612_67742746
seq2: B6Ng01-321H24.b_44_1180

seq1  GAATTCTATAGAAACATAGACATATGTAACAAGACCTTATGGAGTGTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGAAACATAGACATATGTAACAAGACCTTATGGAGTGTACG  50

seq1  CTTCAGGAATTCCTGAGGTTGCCTTAGTAATGTGGTCAAGAGGTTATGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAATTCCTGAGGTTGCCTTAGTAATGTGGTCAAGAGGTTATGCG  100

seq1  TTTTTCCAGGATTTTTAAATGGACAATAGTCTATTATGTAGCAAGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAGGATTTTTAAATGGACAATAGTCTATTATGTAGCAAGTCATG  150

seq1  ACTGCAGCCTTCTTGCACTTTTCCTTCATTACACATTGTTCTTTAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCCTTCTTGCACTTTTCCTTCATTACACATTGTTCTTTAGTTAG  200

seq1  TGTCTATTGGTACCGACATTTGGTGACCTAGCTTCAATGAGATTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTGGTACCGACATTTGGTGACCTAGCTTCAATGAGATTTTAGTT  250

seq1  GGGTCTCTAATGCATAGGACTTGTGACAAGATTTTACATAGCTAAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTAATGCATAGGACTTGTGACAAGATTTTACATAGCTAAATTGC  300

seq1  TCTTAATCAAAAGTCCTAGATAATGGAAGGAAGAGCTCAGGTTCAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCAAAAGTCCTAGATAATGGAAGGAAGAGCTCAGGTTCAAGAGG  350

seq1  AGTAAGTCAGCCTCAACTTTAAATAATCCCAATTCTAGGCTTTGGATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCAGCCTCAACTTTAAATAATCCCAATTCTAGGCTTTGGATCCC  400

seq1  CTGTATGTTTAGAGAGATGCGAAGGACATGGGTTTCCAGTGCGGAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTTAGAGAGATGCGAAGGACATGGGTTTCCAGTGCGGAAAAGT  450

seq1  AAGTTCACATCGCTTAATCCATCTGCAAATATTTACCATGCATTTCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACATCGCTTAATCCATCTGCAAATATTTACCATGCATTTCCATC  500

seq1  CTCCAATGCTGTCTTTGAGATGTTTCTAGTCTCTTAATCTTTTTCTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGCTGTCTTTGAGATGTTTCTAGTCTCTTAATCTTTTTCTTCCA  550

seq1  CATTTGCATGTATGTACGAAATGTTTCCTATGTGTGTGCATATGTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCATGTATGTACGAAATGTTTCCTATGTGTGTGCATATGTGTGTA  600

seq1  AATGTTCAAGAGTGGGGAGGTGTGCATTTGTCTCTATGCACCAGCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAAGAGTGGGGAGGTGTGCATTTGTCTCTATGCACCAGCCACAG  650

seq1  TGTGGATTTGAGGAACAGAGGGCAAGCCAGTTCTCCCTGTCTACTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTTGAGGAACAGAGGGCAAGCCAGTTCTCCCTGTCTACTTTGTC  700

seq1  TGAATCGGGGTGTGGTTGTTATTGTTGCTTGCATCTACTTACACCTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCGGGGTGTGGTTGTTATTGTTGCTTGCATCTACTTACACCTTGCT  750

seq1  ATCTGTCTGAGAGTTTCTTGGGAGTGTCTTGTCTCATC-TTCCATTTTGT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCTGTCTGAGAGTTTCTTGGGAGTGTCTTGTCTCATCTTTCCATTTTGT  800

seq1  CACTATAACACTAGTATTACAGACATGTGCTACCCTACTCAGCTTGATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAACACTAGTATTACAGACATGTGCTACCCTACTCAGCTTGATGT  850

seq1  AGGTTCTAGGAATTCAGATT-GGAGTTCTCATGTTTGCACTGTCT-GGGC  897
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  AGGTTCTAGGAATTCAGATTGGGAGTTCTCATGTTTGCACTGTCTGGGGC  900

seq1  ATTATATAGAGAGACTGTCACCAACACTCATCACCTAGTTTTGACTTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAGAGAGACTGTCACCAACACTCATCACCTAGTTTTGACTTCTC  950

seq1  TGG-CCCTTCTGCATTATTTCATCTATGCTTTCTCCTCCTCTACATTTGT  996
      ||| ||||||||||| ||||||||||||| ||||||| ||||||||||||
seq2  TGGCCCCTTCTGCATAATTTCATCTATGC-TTCTCCT-CTCTACATTTGT  998

seq1  GTCTGTGCCATTATTTACTTAATTACAAAAATG--TGAATATCTCTGTAT  1044
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  GTCTGTGCCATTATTTACTTAATTACAAAAATGGTGGAATATCTCTGTAT  1048

seq1  ATTCTTTTTTTCCTTTTTTATTAGATATTTTCTTTATATACATTTCAAAT  1094
      ||||||||||||  |||| ||||||   |||| |||||||||||||||||
seq2  ATTCTTTTTTTC--TTTTAATTAGAATATTTCCTTATATACATTTCAAAT  1096

seq1  GCTATCCCGAAAGTTCATCTTAGTATATTCTTATTT-ACTTC  1135
      ||||| ||  ||| |||||| ||||||||||||||| |||||
seq2  GCTATTCCCGAAG-TCATCTAAGTATATTCTTATTTAACTTC  1137


seq1: chr4_67824008_67825090
seq2: B6Ng01-321H24.g_67_1155 (reverse)

seq1  CTTTAAAATGAATGAAAGAAA--GTGTGAATAAGCTATGTGAGTGCAAGA  48
      ||||||||||| ||||  |||  ||||||  |||||||||| |||| |||
seq2  CTTTAAAATGATTGAAGCAAAGTGTGTGATAAAGCTATGTG-GTGC-AGA  48

seq1  G-AAAAATCATGA--CAGACAATGGTCAGGTTTCCACAAAAGCAAGCAAA  95
      | |||||||||||   ||||||| |||||| |||||||||||||||| ||
seq2  GAAAAAATCATGAGCAAGACAATTGTCAGG-TTCCACAAAAGCAAGC-AA  96

seq1  GAAGCAGGCAACCTGTTTTTGTTGTTTTGATTGTTGTTGTTGTTTTAAGA  145
      ||||||||||||||||||| |||||||||| || |||||||||||| || 
seq2  GAAGCAGGCAACCTGTTTTGGTTGTTTTGAATG-TGTTGTTGTTTT-AGG  144

seq1  AAGCAATAA-GGAAAGCA-CAGATA-GAAAAATGAACAAAGATTAGTAGG  192
      ||||||||| |||||||| |||||| |||||||| |||| ||||||||||
seq2  AAGCAATAAGGGAAAGCACCAGATAGGAAAAATGGACAAGGATTAGTAGG  194

seq1  AAAAGAATCTTTG-AAAATTTCAGACTAATTTTGTATGG-AAAATTAACT  240
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AAAAGAATCTTTGAAAAATTTCAGACTAATTTTGTATGGAAAAATTAACT  244

seq1  CTCTACAACCA-TAGAGAAGAAACTTCTGAAGAGGAGAAATGGCTGGAAA  289
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAACCATTAGAGAAGAAACTTCTGAAGAGGAGAAATGGCTGGAAA  294

seq1  CTGAATCAGAACAAAACTTATTGTCTCTAAGCAGCACATATCAGACTTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAGAACAAAACTTATTGTCTCTAAGCAGCACATATCAGACTTTG  344

seq1  TTATTGTAGCTACTGTC-TTAAAGAATAAAATCAGGATCCTGAGTATTGT  388
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTATTGTAGCTACTGTCTTTAAAGAATAAAATCAGGATCCTGAGTATTGT  394

seq1  ACTCTAGTGCTGTACCATTTACTTATACCTGTAGTGCTGTACTGGTGTTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTGCTGTACCATTTACTTATACCTGTAGTGCTGTACTGGTGTTG  444

seq1  GTTTTTTGTTTGTTTACTTTCTCTCCTAATATGCATAACACTATTAGCAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTGTTTACTTTCTCTCCTAATATGCATAACACTATTAGCAT  494

seq1  CAGAGAAAACAGAGGCTGATGCAATTCAACTCTGAATGATTATCCAAATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAACAGAGGCTGATGCAATTCAACTCTGAATGATTATCCAAATT  544

seq1  TAGTTTATATGTAGAGAGTTAACTATATACTACCCAGGATAAATATTGCG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATATGTAGAGAGTTAACTATATACTACCCAGGATAAATATTGCG  594

seq1  AAAAAAAAAAAGTATTGACCTACATGGTTGATCAGTTTTTAAAAGTGGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGTATTGACCTACATGGTTGATCAGTTTTTAAAAGTGGCT  644

seq1  TGGCTATGAAACATGGAAGAAATAATTCCAAAGCCTAAACATCATTCCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGAAACATGGAAGAAATAATTCCAAAGCCTAAACATCATTCCAG  694

seq1  TGGCTCCAGCTGAGAAAGTTGATTTCAAGTAGACAAGTTGTCCATGTTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCAGCTGAGAAAGTTGATTTCAAGTAGACAAGTTGTCCATGTTGG  744

seq1  CTAAGCAAGTTCCCCCGGAAACTCATGGACTGAGTATAGCTCTTTCTTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAGTTCCCCCGGAAACTCATGGACTGAGTATAGCTCTTTCTTCA  794

seq1  TTGCCCCTGATGACTCCTTTTATGGCCTCTGAATATATGGAATAGGAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTGATGACTCCTTTTATGGCCTCTGAATATATGGAATAGGAAAA  844

seq1  GCCTATGTCCTGCACCACTGAGATGCTTGCATGTCTAATAACCACTTTAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGTCCTGCACCACTGAGATGCTTGCATGTCTAATAACCACTTTAG  894

seq1  ATAATTTACATCAAGCATCCTTAATATTCAACAACATTGCTGAAATTTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACATCAAGCATCCTTAATATTCAACAACATTGCTGAAATTTGA  944

seq1  GGAGCAGCACATGAATTTGACTGCAACACCTTTGGCTTACCCTATGTAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCACATGAATTTGACTGCAACACCTTTGGCTTACCCTATGTAAG  994

seq1  TGGTTCTTAGAATCTTCCCAGAAATGAAAATACCAGAGGAAAACACTGGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTAGAATCTTCCCAGAAATGAAAATACCAGAGGAAAACACTGGA  1044

seq1  TACAGTGTAGGAAAAAGCTCCCATATATAAAAGTAGAGTGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTAGGAAAAAGCTCCCATATATAAAAGTAGAGTGAATTC  1089


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