BAC Information

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BAC

Clone NameB6Ng01-321N13
Chromosome4 (Build37)
Map Location 45,247,297 - 45,358,369
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneMcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N13.bB6Ng01-321N13.g
ACCGA110849GA110850
length1,149489
definitionB6Ng01-321N13.b B6Ng01-321N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,357,228 - 45,358,369)(45,247,297 - 45,247,790)
sequence
gaattccagaagattaagacaggaagatctctgagttcaaggtcatctgg
gattaaaggtgtggtggcacacacctttaatctgggccataccttctgct
ggagagtttggacattgaaagaaggaagattttattctctcctttgcctg
cttgccttgtgggactgagcaactgctagatccttggacttccattcaca
gctgctgctgaccattgttgggggttggactgctgactgtaagtcatcaa
caaattcctttactatatagagacgacccataagttctgcagctctagag
aaccctgactaatacagccagcctggtctacaatgagttccaggacagcc
agggctacacaaagaaaccctgtctggaaaaaaaaaaaaatccaaacaaa
ataaagtaaaaacaactttattttcaggtcagtgagatagctcagtggat
aacagtgattgcagctgagcctagagacctgagtgtgatccccggtttaa
ggagagagagaactaacttcttcgaattgccctctgacccttcacacaca
caactaaataaatgtaaccaaaccaaacctttatgctgtatgtcctaccg
tttcactttcttcagatttacatttatattatttgtaaataaatttaact
ctttttccttgtgatagtttgcacattaatttcccatcactttccactta
gctagtttaataatgttatatgtattctatctacttatgcatgcaatcat
gtttgtgggcacacgtgtgccacagtgcacatgtggaggtcagaaaacca
ttagaagttctctctttccagcatgtggactctggagatcaatctcaggt
tgtgagtcttaattacaactaacccactgacctatcttagtaactccatt
ttactaatgtaaaagatgcagagtgagatgctagcttttaaaacaaatag
tactgggaagatctgtccaagtatgagtgtgtggagctttgatgccccac
attcacataaaaaagcttggtatagctgttagtttgggacagggtgaacc
ttggtgagaatatgggaagaaatgttgccctaagaaactaagccagcggt
atctgctggcttttgtgtgtcactctgacaaaaacatgagtcatcagcg
cattcctagaatccttcagaagctgaaaggagagcactgactccagagag
ttaccttttggtcgcatgtgcagagtaactctctctctctctctctctct
ctctctctctcctctcctctcctctctactctctcttctttcctctctcc
tctctctctctctctctctctctctctctctctctctctcacacacacac
acacacacaaatacataaacacacaaatgaaacacatacatatacataaa
catgcacacatacatatatacacactcataacgaatcaaaaatattttta
ttttaactttattatgtgtgtgtctgcatattgtgcgacatgtgtatgtg
tggtacctgcagaggccagaaaagggcattgggtcccttataactggagt
tataaatggttgtgagacactatatggagctgggaatggaacttgagtcc
gtctggaagagcagaacagctatcttaaatggtaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45357228_45358369
seq2: B6Ng01-321N13.b_47_1195 (reverse)

seq1  CGCTGATGACTCTAGTTTTTGTCAAGTTGACACACAAAA-CCAGCAG-TA  48
      ||||||||||||  ||||||||||   |||||||||||| ||||||| ||
seq2  CGCTGATGACTCATGTTTTTGTCAGAGTGACACACAAAAGCCAGCAGATA  50

seq1  CAGGCTGCCTAGTTTTCTTAGG--CACATTTCTCCCATTATTCTCA-CAA  95
      |  |||| ||   |||||||||   |||||||| ||  |||||||| |||
seq2  C-CGCTGGCTTAGTTTCTTAGGGCAACATTTCTTCCCATATTCTCACCAA  99

seq1  GG-TCA-CCTGT-CCAAACT-ACAGCTAATACCAAGC-TTTTTATGTGGA  140
      || ||| ||||| ||||||| |||||| ||||||||| |||||||||| |
seq2  GGTTCACCCTGTCCCAAACTAACAGCT-ATACCAAGCTTTTTTATGTGAA  148

seq1  TGGTGGGCATCCAAGCT-CACACACTCATACTTGGACAGATCTTCCCAGT  189
      ||  ||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TGTGGGGCATCAAAGCTCCACACACTCATACTTGGACAGATCTTCCCAGT  198

seq1  ACCTATTTTGTTTTTAAAGCTAGCATCTCACTCTGCATCTTTTACATTAG  239
      | ||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  A-CTA-TTTGTTTTAAAAGCTAGCATCTCACTCTGCATCTTTTACATTAG  246

seq1  TAAAATGGAGTTACTAAGATAGGTCAGTGGGTTAGTTGTAATTAAGACTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGAGTTACTAAGATAGGTCAGTGGGTTAGTTGTAATTAAGACTC  296

seq1  ACAACCTGAGATTGATCTCCAGAGTCCACATGCTGGAAAGAGAGAACTTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGAGATTGATCTCCAGAGTCCACATGCTGGAAAGAGAGAACTTC  346

seq1  TAATGGTTTTCTGACCTCCACATGTGCACTGTGGCACACGTGTGCCCACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTTCTGACCTCCACATGTGCACTGTGGCACACGTGTGCCCACA  396

seq1  AACATGATTGCATGCATAAGTAGATAGAATACATATAACATTATTAAACT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATTGCATGCATAAGTAGATAGAATACATATAACATTATTAAACT  446

seq1  AGCTAAGTGGAAAGTGATGGGAAATTAATGTGCAAACTATCACAAGGAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGGAAAGTGATGGGAAATTAATGTGCAAACTATCACAAGGAAA  496

seq1  AAGAGTTAAATTTATTTACAAATAATATAAATGTAAATCTGAAGAAAGTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAAATTTATTTACAAATAATATAAATGTAAATCTGAAGAAAGTG  546

seq1  AAACGGTAGGACATACAGCATAAAGGTTTGGTTTGGTTACATTTATTTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTAGGACATACAGCATAAAGGTTTGGTTTGGTTACATTTATTTAG  596

seq1  TTGTGTGTGTGAAGGGTCAGAGGGCAATTCGAAGAAGTTAGTTCTCTCTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGAAGGGTCAGAGGGCAATTCGAAGAAGTTAGTTCTCTCTC  646

seq1  TCCTTAAACCGGGGATCACACTCAGGTCTCTAGGCTCAGCTGCAATCACT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACCGGGGATCACACTCAGGTCTCTAGGCTCAGCTGCAATCACT  696

seq1  GTTATCCACTGAGCTATCTCACTGACCTGAAAATAAAGTTGTTTTTACTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCACTGAGCTATCTCACTGACCTGAAAATAAAGTTGTTTTTACTT  746

seq1  TATTTTGTTTGGATTTTTTTTTTTTTCCAGACAGGGTTTCTTTGTGTAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTTGGATTTTTTTTTTTTTCCAGACAGGGTTTCTTTGTGTAGC  796

seq1  CCTGGCTGTCCTGGAACTCATTGTAGACCAGGCTGGCTGTATTAGTCAGG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTCATTGTAGACCAGGCTGGCTGTATTAGTCAGG  846

seq1  GTTCTCTAGAGCTGCAGAACTTATGGGTCGTCTCTATATAGTAAAGGAAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTAGAGCTGCAGAACTTATGGGTCGTCTCTATATAGTAAAGGAAT  896

seq1  TTGTTGATGACTTACAGTCAGCAGTCCAACCCCCAACAATGGTCAGCAGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGATGACTTACAGTCAGCAGTCCAACCCCCAACAATGGTCAGCAGC  946

seq1  AGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTGCTCAGTCCCACAAGGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTGCTCAGTCCCACAAGGC  996

seq1  AAGCAGGCAAAGGAGAGAATAAAATCTTCCTTCTTTCAATGTCCAAACTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCAAAGGAGAGAATAAAATCTTCCTTCTTTCAATGTCCAAACTC  1046

seq1  TCCAGCAGAAGGTATGGCCCAGATTAAAGGTGTGTGCCACCACACCTTTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGAAGGTATGGCCCAGATTAAAGGTGTGTGCCACCACACCTTTA  1096

seq1  ATCCCAGATGACCTTGAACTCAGAGATCTTCCTGTCTTAATCTTCTGGAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATGACCTTGAACTCAGAGATCTTCCTGTCTTAATCTTCTGGAA  1146

seq1  TTC  1142
      |||
seq2  TTC  1149

seq1: chr4_45247297_45247790
seq2: B6Ng01-321N13.g_69_563

seq1  GAATTCCATTCCTAGAATCCTTCAGAAGCTGAAAGGAGAGCACTGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTAGAATCCTTCAGAAGCTGAAAGGAGAGCACTGACTCC  50

seq1  AGAGAGTTACCTTTTGGTCGCATGTGCAGAGTAACTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTACCTTTTGGTCGCATGTGCAGAGTAACTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTCTCCTCTCCTCTCCTCTCTCCTCTCTCTTCTTTCCT  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCCTCTCCTCTCCTCTCTACTCTCTCTTCTTTCCT  150

seq1  CTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  200

seq1  ACACACACACACACAAATACATAAACACACAAATAAAACACATACATATA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACACACACACACAAATACATAAACACACAAATGAAACACATACATATA  250

seq1  CATAAACATGCACACATACATATATACACACTCATAACGAATCAAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATGCACACATACATATATACACACTCATAACGAATCAAAAATA  300

seq1  TTTTTATTTTAACTTTATTATGTGTGTGTCTGCATATTGTGCGACATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTAACTTTATTATGTGTGTGTCTGCATATTGTGCGACATGTG  350

seq1  CATGTCTGGTACCTGCAGAGGCCAGAAAAGGGCATTGGGTCCCTTAGAAC  400
       |||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGTGTGGTACCTGCAGAGGCCAGAAAAGGGCATTGGGTCCCTTATAAC  400

seq1  TGGAGTTATAGATGGTTGTGAGATACTATATGGTGCTGGGAATGGAACTT  450
      |||||||||| |||||||||||| ||||||||| ||||||||||||||||
seq2  TGGAGTTATAAATGGTTGTGAGACACTATATGGAGCTGGGAATGGAACTT  450

seq1  GAGTCCTTCAGGAAGAGCAG-ACAGCTCTCTTAAATGGTAAGCCA  494
      |||||| || |||||||||| |||||| |||||||||||||| ||
seq2  GAGTCCGTCTGGAAGAGCAGAACAGCTATCTTAAATGGTAAGGCA  495