BAC Information

Click to search

BAC

Clone NameB6Ng01-322B09
Chromosome4 (Build37)
Map Location 143,551,589 - 143,551,921
singlet/doubletsinglet
Overlap genenone
Upstream gene6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984
Downstream geneLOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322B09.bB6Ng01-322B09.g
ACCGA111022GA111023
length1,0281,189
definitionB6Ng01-322B09.b B6Ng01-322B09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttttcaatctttttattaggtatttatttcatttacatttcc
aatgctatcccaaaagtcccctacatgcttccccacccactcccccaccc
actcattcccacttcttggacctggtgttcccctgtactgaggcagataa
agtctacacgaccaatgggcctctctttccactgatagccgactaggcca
tcttctgatacatatgcagctagagacacgagctccggggggtattggtt
agttcatattgttgttccacctataggattgcagacccctttagttcctt
ggttacttaagttccctccctttgagttcggagagtatcccacctcccag
ttctttgacatattctggagggtccctccaacctcctacttcccaaagtt
gtctgtttccactcttctgctggttttcagggcttcagtcttgttccccc
tcccaatacttgatcatgttcctctcttccccttcctttcccctttctga
ccaaggtccctctctcccaatcctgtgaatgcttttcttctcccacccaa
gtgggaatgagacatcctcacttggccccttcagcttgttaacgttttta
agttctgggaattatatcctgggtattagtacttcttttgactaatatcc
agttattaatgattatataccatgcatgtcccttttaatgagtattttcc
atgcatgtcccttttagtctgagttatctcactcaggatgataatttgca
gttccatccatttacctgcaaaactcaggatgtcctcattcttaattgct
aagtagtactccattgtgtaaataaagcatctaaaagtatgatcacctgc
tcagttataaagacaatcacactggcatatggtgttcattaatctatttc
atatttttctaaccacatttatccctcactaaataatacattttctttta
cagtactcttgtttgtcagtgttctacatttaaattgctgtactataatc
aattcaagtcttttattgagcagcaata
gaattctcacccgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaagatccttaatcatcagagaaatgcaaatcaaaacgacactgagat
tccatctcacaacagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggaaatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttatagtagcctgaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacataatg
gagtactacgcagcttttaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttagtatagcgagatataagatacaatttgcaaaacacatgaaactgaag
aagaatgaagaccaaagtgtggacactttgccccttcttagaattggaaa
caatcacccatggaaggaattacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatta
gcctccaaactatgacaccactgcatacactagcaatcctttgttgcaag
gaccatgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cagaagtgaatgctcacagtcaactattgggatggatcacagggccccca
atgggaggagctagagaaagtatccaaggagctaagagatctgcaaccct
gtaggtgaacaacattatgaactaacccataaccccagagctcttgactc
tagctgcatatgtattcaaaggatgcctagtggccatcactgcaaggaga
gtccaatgttcagccaactttattatgcccagttacaggacgtcaggcaa
aatggaattgctggtgatgatgggacaagtctgcgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143551589_143551921
seq2: B6Ng01-322B09.b_67_357 (reverse)

seq1  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAA  50
      ||||| ||||||| |||||||| ||||||| |||||||||||||||||||
seq2  AAGTAACCAAGGAACTAAAGGGGTCTGCAATCCTATAGGTGGAACAACAA  50

seq1  TATGAACTAACCAGTACTCCCCGGTGCTCGTGTCTCTACCTGCAAATGAA  100
      ||||||||||||| ||| |||||| ||||||||||||| ||||| ||| |
seq2  TATGAACTAACCAATACCCCCCGGAGCTCGTGTCTCTAGCTGCATATGTA  100

seq1  TCAGAAAATGGCCTTGTCGGCCATCAGTGGAAAGAGAGGCCCATTAGTCG  150
      |||||| ||||||| |||||| ||||||||||||||||||||||| ||||
seq2  TCAGAAGATGGCCTAGTCGGCTATCAGTGGAAAGAGAGGCCCATTGGTCG  150

seq1  TGCAAACATTATATGCCTCAGGACAGGGGAACGACAGGGCCAAGAA--GG  198
      || | || |||| |||||||| ||||||||||  |||| |||||||  ||
seq2  TGTAGACTTTATCTGCCTCAGTACAGGGGAACACCAGGTCCAAGAAGTGG  200

seq1  GAGTGGGTTGGTGGCGGAGTGGGTGGGGGAGTGTGTAGCGGACTTTTGGG  248
      || || || ||||| ||||||||||||| ||  ||||| |||||||||||
seq2  GAATGAGTGGGTGGGGGAGTGGGTGGGGAAGCATGTAGGGGACTTTTGGG  250

seq1  ATAGCATTGGAAATGTAAATGAAATAAGTACCCAATTTAAAAAAAAAACA  298
      ||||||||||||||||||||||||||| |||| |||  |||         
seq2  ATAGCATTGGAAATGTAAATGAAATAAATACCTAATAAAAA---------  291

seq1  GAAAAAAAGCAAAAAAAGAAAATACCTAATAAAAA  333
                                         
seq2  -----------------------------------  291