BAC Information

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BAC

Clone NameB6Ng01-322E01
Chromosome4 (Build37)
Map Location 13,824,074 - 13,825,242
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322E01.bB6Ng01-322E01.g
ACCGA111143GA111144
length1,1791,155
definitionB6Ng01-322E01.b B6Ng01-322E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgtttacaataagtatgtcatgtcatgtccagaaagtagcatt
tcgccactttcctgtccaatgcttggctctgcattatttctccattctcc
tctgcagtgcttcctgagccttggaagggaacgctactgatgctctgtct
atgtctgagcactcacctcacgctcacttgttcttgttactttgaagagt
tatgactctctacaatagcaagtgtctctaactaaagttgagagccaaaa
aacatatgatattatgtttttgatgcatgcctgtaaatataaatagtttg
aacttaatttgacaacttgacaagtctgaaaaacagcaaccataagttga
cctcttgacactaaccccgaacagctgtctttcctcccaactgtggaagt
cactcttttactagatggacagtgtccagtatgaattttctattcaaaga
gtctcaactccaattagaaagcaattggtaactcctataatggtcaagca
actatttcaccaggggacatatcatacttacaatatcagaatggcactat
ataggtccaggactgactttgaccattgatgtcttctgccccacctccag
tagcctccacaacaccttccagtactatgaaagctatccagatgggaggg
gatttcctggtcagttttacattggcttatctatgaactgaatctaaagt
gtgcattgtcttcagcaataacggcttacaaagaacacaacaagaatatc
aatatattctagaaaaaatataaaaataagatatttgctacttgggattg
gctccaaatatctgaagtttcagatttctgtaacacctcccttctgtggt
gacaaaagtgacaagagaactcctatccccaatacaccatgggaaagtca
ttttcgtgtacagaaaactgacaaacagaggagcttggagtttgggacat
aaaggccatttttcttttaaagttagatattatacattgctatactgtca
tttttgtttctatctgatcattttcttttcttgtggcatcacactgttat
ttagtctgctcatttctagcaatattcttgttctcttagagctacttgtc
ctgaaccttatacgggtcattcgattacatacagcatgtatataccatgc
agtattatgggctggatcttacccacgta

gaattctctcaaagtgtcccatctcctctcctatatccattctagaaaaa
atattaaatcctttaatattttcctttacctcaatatttcctctatcaga
ccccatgcttgcccttgaaggttcttgtaggaaccatcttgaaagagaga
gaaaggaatacctcagcagataaacattatatgttgaggaccgaggtgga
agcatgcatgcacacatgttactactgtgacagtgttttatatattgtgg
tccagaaacactggagcatatactttcttcaaagtatagctgctctcagt
tttgtggcgatgataatttcccttgggacttctggctttccaacctactc
tggagttttcctgtgcttcagatggtttccaagagcgccactatttcccc
tggatgctctgatctgggggaaaagaccttcttcccttgaaagctaacaa
caaaaggactgtgattatagttcggagcttttctaacacagagaaagccc
tggatttaatcccaagaataatagaaaatccaaataagacctaactaaac
agcagtgactctatatagtatgtccctaaagattatgtatgcatattttt
atttttattttattttattttttttaagatttatttattgattatttgta
agtacactgtagctgtcttcagacactccagaagagggaatcagatctcg
ttacggatggttgtgagccaccatgtggttgctgggatttgaactctgga
ccttcggaagagcagtcgggtgctcttgcccactgagccatctcaccagc
ccccgaaagtagaagcaagttgtggtttgaataagtttgatcccataaac
tcacgtgtttgaatgcttggcctatagaaagtggcactattaggaggtgt
gggccttgttagaaaagtgtgtcactgtagtgggatttgaggtcccctat
gctcaacctatgctcagtgtagcacagtctctcctgttgcctacagatca
gatgtagatcttctaagttcacctcttgcagcatgtaagctctacactgc
aagctttcttgtcatgtgatatgactaaacctctgaaaatgtaagcagcc
aataaatgttgtccttgtgaagtgctgtgtcttggtttctctttccacgc
aataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13824074_13825242
seq2: B6Ng01-322E01.g_67_1221

seq1  GAATTCTCTCAAAGTGTCCCATCTCCTCTCCTATATCCATTCTAGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAGTGTCCCATCTCCTCTCCTATATCCATTCTAGAAAAA  50

seq1  ATATTAAATCCTTTAATATTTTCCTTTACCTCAATATTTCCTCTATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATCCTTTAATATTTTCCTTTACCTCAATATTTCCTCTATCAGA  100

seq1  CCCCATGCTTGCCCTTGAAGGTTCTTGTAGGAACCATCTTGAAAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGCTTGCCCTTGAAGGTTCTTGTAGGAACCATCTTGAAAGAGAGA  150

seq1  GAAAGGAATACCTCAGCAGATAAACATTATATGTTGAGGACCGAGGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATACCTCAGCAGATAAACATTATATGTTGAGGACCGAGGTGGA  200

seq1  AGCATGCATGCACACATGTTACTACTGTGACAGTGTTTTATATATTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATGCACACATGTTACTACTGTGACAGTGTTTTATATATTGTGG  250

seq1  TCCAGAAACACTGGAGCATATACTTTCTTCAAAGTATAGCTGCTCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACACTGGAGCATATACTTTCTTCAAAGTATAGCTGCTCTCAGT  300

seq1  TTTGTGGCGATGATAATTTCCCTTGGGACTTCTGGCTTTCCAACCTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCGATGATAATTTCCCTTGGGACTTCTGGCTTTCCAACCTACTC  350

seq1  TGGAGTTTTCCTGTGCTTCAGATGGTTTCCAAGAGCGCCACTATTTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTCCTGTGCTTCAGATGGTTTCCAAGAGCGCCACTATTTCCCC  400

seq1  TGGATGCTCTGATCTGGGGGAAAAGACCTTCTTCCCTTGAAAGCTAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCTGATCTGGGGGAAAAGACCTTCTTCCCTTGAAAGCTAACAA  450

seq1  CAAAAGGACTGTGATTATAGTTCGGAGCTTTTCTAACACAGAGAAAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGACTGTGATTATAGTTCGGAGCTTTTCTAACACAGAGAAAGCCC  500

seq1  TGGATTTAATCCCAAGAATAATAGAAAATCCAAATAAGACCTAACTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAATCCCAAGAATAATAGAAAATCCAAATAAGACCTAACTAAAC  550

seq1  AGCAGTGACTCTATATAGTATGTCCCTAAAGATTATGTATGCATATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGACTCTATATAGTATGTCCCTAAAGATTATGTATGCATATTTTT  600

seq1  ATTTTTATTTTATTTTATTTTTTTTAAGATTTATTTATTGATTATTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTATTTTATTTTTTTTAAGATTTATTTATTGATTATTTGTA  650

seq1  AGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGATCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGATCTCG  700

seq1  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGA  750

seq1  CCTTCGGAAGAGCAGTCGGGTGCTCTTGCCCACTGAGCCATCTCACCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGAAGAGCAGTCGGGTGCTCTTGCCCACTGAGCCATCTCACCAGC  800

seq1  CCCCGAAAGTAGAAGCAAGTTGTGGTTTGAATAAGTTTGATCCCATAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAAGTAGAAGCAAGTTGTGGTTTGAATAAGTTTGATCCCATAAAC  850

seq1  TCACGTGTTTGAATGCTTGGCCTATAGAAAGTGGCACTATTAGGAGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGTTTGAATGCTTGGCCTATAGAAAGTGGCACTATTAGGAGGTGT  900

seq1  -GGCCTTGTTAGAAAAAGTGTGTCACTGTAGGTGGGATTTGAGGTCCCCT  949
       ||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  GGGCCTTGTTAG-AAAAGTGTGTCACTGTA-GTGGGATTTGAGGTCCCCT  948

seq1  ATGCTCAACCTATGCTCAGTGTAGCACAGTCTCTCCTTGTTGCCTACAGA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGCTCAACCTATGCTCAGTGTAGCACAGTCTCTCC-TGTTGCCTACAGA  997

seq1  TCAAGATGTAGATC-TCTAGGTTTCACCTCCTGCAGCATGTAGGCCTCTA  1048
      || ||||||||||| |||| | |||||||| ||||||||||| | |||||
seq2  TC-AGATGTAGATCTTCTAAG-TTCACCTCTTGCAGCATGTAAG-CTCTA  1044

seq1  CACTGCCAAGC-TTCCTGTCATGGTGATAATGGACTAAACCTCTGAAAAT  1097
      ||||| ||||| ||| |||||| ||||||   ||||||||||||||||||
seq2  CACTG-CAAGCTTTCTTGTCAT-GTGATA--TGACTAAACCTCTGAAAAT  1090

seq1  GTAAGGCAGCCCCAATTAAATGTTGTCCTTTGTGAGAGGTGCTGTGGTCT  1147
      |||| ||||||   | |||||||||||||   || || ||||||| ||||
seq2  GTAA-GCAGCC---AATAAATGTTGTCCT---TGTGAAGTGCTGT-GTCT  1132

seq1  TGGTGTCTCTTCACA-GCAATAA  1169
      |||| ||||||  || |||||||
seq2  TGGTTTCTCTTTCCACGCAATAA  1155


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