BAC Information

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BAC

Clone NameB6Ng01-322F07
Chromosome4 (Build37)
Map Location 78,776,880 - 78,917,724
singlet/doubletdoublet
Overlap geneLOC100040036
Upstream geneLOC100039974, LOC100039996, LOC100040026
Downstream geneLOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322F07.bB6Ng01-322F07.g
ACCGA111197GA111198
length5401,158
definitionB6Ng01-322F07.b B6Ng01-322F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,776,880 - 78,777,424)(78,916,557 - 78,917,724)
sequence
accagggaagccatctggtctgtcctgtgttttactttgtttggagatgt
ttggtttttaatttaatctcctggcttattatttttcagaagctcaattt
ttcataatttaatcttgcttgtatatatgtaggaaattatctgtttattt
tagttacccatttggtttcagaagaagaatgatttcaaagcacccatgca
attacatgacactaattgaagactatcaacaatgtttacatgaaagctaa
tataaaatatacatgacaattcatgctttatctttaaagaaagtatcttt
ccaaattgaaaaaaaaaaaaagtttgtattaggacataccttgcagcaca
cctcaggcagccacaggataaataaaaggagtccactagaaagaagcaga
gttcttgaatctcatttagaagtaggggtaaaatattcataagaggtaga
tggaggaagggaactgggtgggaaatggcatggggaatggcagggatagg
ttcaggtttcaggatagactacaatcatggccatgtggcc

gaattcacttaagagacaaattaaaaattaaagctaccaagccagagcta
agatgttttattcactctgcttcaccttggagatggtggtcatttaacca
taactcaaaatattaaaaatagatggaaaatcaaaattaaaatttaaact
atactttcctttttctataaagcaaacatttacttcttaaaaggtacagt
gatcttgaacttaaaaaatgactattttgtttattcaagtcagtcttatg
ttttttgtttaaaattctatttcacaggaacttttttttaaaatattttc
ttctttagtcctcagttttcatgttgactaaaggccatccataatactca
tttgtgttttgactagcctgtttcttatacaaaaacatttattcatatga
atgtttctttgtttttttaattaattatataagctgcctcacaatctaat
attctttatattcacacttttatttagcacatatatgcatgcatatatat
gattatttttcaagaattattttatatttaaatatgtgtatatatgtgag
gtatctgccattgagtgcgaattcttatgcaagccagatgtcagcaccag
atcccatagacctagagttatagtggtttgtgagtttctcaacatggttt
ctaggtacctaactatggtcctgagaagaacatcattcataaattattgc
tgatacatctgcttgatttccatatgagtcataactaccaggcacttgaa
acatcttctaattgctactatatagaatgcctaatggtagataatataag
caatgatgtctgaatctctgtgaaccttgtttggatgttagcataaatac
aatgatgggtctgagttatttttgtaattaagtaagtcataatgtaatca
gatttcttctttggttatttaattgtttttttctatatttattttctttt
taagtaattatctatgtactatattacttactctcttctaagcacagagc
ttcacattaggatattcatagtggagcatcacagccactagaggagtact
tagatttactagatttaatactttgactacttgtgtgaagtacatagttc
agtacagggaagaaatatgcagacctttcgctggttggatcatgttgaac
cgatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78776880_78777424
seq2: B6Ng01-322F07.b_52_597

seq1  GAATTCACCAGGGAAGCCATCTGGTCTGTCCTGTGTTTTACTTTGTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGGGAAGCCATCTGGTCTGTCCTGTGTTTTACTTTGTTTGG  50

seq1  AGATGTTTGGTTTTTAATTTAATCTCCTGGCTTATTATTTTTCAGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTGGTTTTTAATTTAATCTCCTGGCTTATTATTTTTCAGAAGCT  100

seq1  CAATTTTTCATAATTTAATCTTGCTTGTATATATGTAGGAAATTATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCATAATTTAATCTTGCTTGTATATATGTAGGAAATTATCTGT  150

seq1  TTATTTTAGTTACCCATTTGGTTTCAGAAGAAGAATGATTTCAAAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGTTACCCATTTGGTTTCAGAAGAAGAATGATTTCAAAGCACC  200

seq1  CATGCAATTACATGACACTAATTGAAGACTATCAACAATGTTTACATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTACATGACACTAATTGAAGACTATCAACAATGTTTACATGAA  250

seq1  AGCTAATATAAAATATACATGACAATTCATGCTTTATCTTTAAAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATATAAAATATACATGACAATTCATGCTTTATCTTTAAAGAAAGT  300

seq1  ATCTTTCCAAATTG-AAAAAAAAAAAAGTTTGTATTAGGACATACCTTGC  349
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCAAATTGAAAAAAAAAAAAAGTTTGTATTAGGACATACCTTGC  350

seq1  AGCACACCTCAGGCAGCCACAGGATAAATAAAAGGAGTCCACTAGAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCTCAGGCAGCCACAGGATAAATAAAAGGAGTCCACTAGAAAGA  400

seq1  AGCAGAGTTCTTGAATCTCATTTAGAAGTAGGGGTAAAATATTCATAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTTCTTGAATCTCATTTAGAAGTAGGGGTAAAATATTCATAAGA  450

seq1  GGTAGATGGAGGAAGGGAACTGGGTGGGAAATGGCATGGGGAATGGCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGGAGGAAGGGAACTGGGTGGGAAATGGCATGGGGAATGGCAGG  500

seq1  GATAGGTTCAGGTTTGAGGAGAGACAAGAAGCATGGCCATGTGGCC  545
      ||||||||||||||| |||| |||| | || |||||||||||||||
seq2  GATAGGTTCAGGTTTCAGGATAGACTACAATCATGGCCATGTGGCC  546


seq1: chr4_78916557_78917724
seq2: B6Ng01-322F07.g_66_1223 (reverse)

seq1  TTCCATCGGGTCAACAATTTTGGATCCACACAGCAGAAAGTTCTTGCATT  50
      ||||||||| ||||||      ||||||  |||| ||||| || ||||| 
seq2  TTCCATCGGTTCAACA-----TGATCCAACCAGC-GAAAGGTC-TGCAT-  42

seq1  ATTTTCTTCCTTGTACCTAAATTATTGTACTTCACAC-AGTGGTCAAGGT  99
        |||||||| |||| || || || |||||||||||| ||| ||||| ||
seq2  -ATTTCTTCCCTGTA-CTGAACTA-TGTACTTCACACAAGTAGTCAAAGT  89

seq1  ATTATATCTTAGTAAATCTAAGTACTCTTCTAGTGGCTTGTGATGCTCCA  149
      |||| ||| |||||||||||||||||| ||||||||| ||||||||||||
seq2  ATTAAATC-TAGTAAATCTAAGTACTCCTCTAGTGGC-TGTGATGCTCCA  137

seq1  CTATTGAAT-TTCTAATGTGAAGCTCTGTGCTTAGAAGAGAGTAAGT-AT  197
      ||| ||||| | ||||||||||||||||||||||||||||||||||| ||
seq2  CTA-TGAATATCCTAATGTGAAGCTCTGTGCTTAGAAGAGAGTAAGTAAT  186

seq1  ATAGTACATTAGATATTTACTTAAAAAGAAAATAAATATAGAAAAAAACA  247
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGTACA-TAGATAATTACTTAAAAAGAAAATAAATATAGAAAAAAACA  235

seq1  ATTAAATAACCAAAGAAGAAATCTGATTACATTATGACTTACTTAATTAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAACCAAAGAAGAAATCTGATTACATTATGACTTACTTAATTAC  285

seq1  AAAA--TACTCAGACCCATCATTGTATTTATGCTAACATCCAAACAAGGT  345
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAACTCAGACCCATCATTGTATTTATGCTAACATCCAAACAAGGT  335

seq1  TCACAGAGATTCAGACATCATTGCTTATATTATCTACCATTAGGCATTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGATTCAGACATCATTGCTTATATTATCTACCATTAGGCATTCT  385

seq1  ATATAGTAGCAATTAGAAGATGTTTCAAGTGCCTGGTAGTTATGACTCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTAGCAATTAGAAGATGTTTCAAGTGCCTGGTAGTTATGACTCAT  435

seq1  ATGGAAATCAAGCAGATGTATCAGCAATAATTTATGAATGATGTTCTTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATCAAGCAGATGTATCAGCAATAATTTATGAATGATGTTCTTCT  485

seq1  CAGGACCATAGTTAGGTACCTAGAAACCATGTTGAGAAACTCACAAACCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCATAGTTAGGTACCTAGAAACCATGTTGAGAAACTCACAAACCA  535

seq1  CTATAACTCTAGGTCTATGGGATCTGGTGCTGACATCTGGCTTGCATAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCTAGGTCTATGGGATCTGGTGCTGACATCTGGCTTGCATAAG  585

seq1  AATTCGCACTCAATGGCAGATACCTCACATATATACACATATTTAAATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGCACTCAATGGCAGATACCTCACATATATACACATATTTAAATAT  635

seq1  AAAATAATTCTTGAAAAATAATCATATATATGCATGCATATATGTGCTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTCTTGAAAAATAATCATATATATGCATGCATATATGTGCTAA  685

seq1  ATAAAAGTGTGAATATAAAGAATATTAGATTGTGAGGCAGCTTATATAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTGTGAATATAAAGAATATTAGATTGTGAGGCAGCTTATATAAT  735

seq1  TAATTAAAAAAACAAAGAAACATTCATATGAATAAATGTTTTTGTATAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAAAACAAAGAAACATTCATATGAATAAATGTTTTTGTATAAG  785

seq1  AAACAGGCTAGTCAAAACACAAATGAGTATTATGGATGGCCTTTAGTCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTAGTCAAAACACAAATGAGTATTATGGATGGCCTTTAGTCAA  835

seq1  CATGAAAACTGAGGACTAAAGAAGAAAATATTTTAAAAAAAAGTTCCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACTGAGGACTAAAGAAGAAAATATTTTAAAAAAAAGTTCCTGT  885

seq1  GAAATAGAATTTTAAACAAAAAACATAAGACTGACTTGAATAAACAAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAATTTTAAACAAAAAACATAAGACTGACTTGAATAAACAAAAT  935

seq1  AGTCATTTTTTAAGTTCAAGATCACTGTACCTTTTAAGAAGTAAATGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTTTAAGTTCAAGATCACTGTACCTTTTAAGAAGTAAATGTTT  985

seq1  GCTTTATAGAAAAAGGAAAGTATAGTTTAAATTTTAATTTTGATTTTCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAGAAAAAGGAAAGTATAGTTTAAATTTTAATTTTGATTTTCCA  1035

seq1  TCTATTTTTAATATTTTGAGTTATGGTTAAATGACCACCATCTCCAAGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTAATATTTTGAGTTATGGTTAAATGACCACCATCTCCAAGGT  1085

seq1  GAAGCAGAGTGAATAAAACATCTTAGCTCTGGCTTGGTAGCTTTAATTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGTGAATAAAACATCTTAGCTCTGGCTTGGTAGCTTTAATTTT  1135

seq1  TAATTTGTCTCTTAAGTGAATTC  1168
      |||||||||||||||||||||||
seq2  TAATTTGTCTCTTAAGTGAATTC  1158


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