BAC Information

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BAC

Clone NameB6Ng01-322F15
Chromosome4 (Build37)
Map Location 7,971,136 - 8,116,522
singlet/doubletdoublet
Overlap geneCar8, LOC100039494
Upstream geneLOC666700
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322F15.bB6Ng01-322F15.g
ACCGA111213GA111214
length1,0531,113
definitionB6Ng01-322F15.b B6Ng01-322F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,971,136 - 7,972,106)(8,115,395 - 8,116,522)
sequence
gaattcaggcttctaatttttcttccctcctgtgtgctggtgcttgatgc
aatgagatgagaaatcatctttgacaatcttctaaggggaagagcagcac
aatccataaaaatttactgataaactgttttatcctgcataccaaagtta
ctgttttaaatcaaacattatcagtaataaaattacattaagttcctctt
acatgccatcgttgtgctggtcctgtagtgtgttgaaatgtgtgcttccc
ccaggccttgaaagaaatgaacaactctgcctccttccaaatgttagttc
aactgtataatgttctttatttctcagtacatattttattatttcctcca
aatatagaacaaatatagctgatcaagtaaaatttctccatggcccactg
aaacatgtgactctaaacatagaaaataaccatattaaaaattgtatagg
aaaatgaataaaaacacctgggggagccattttgggtccaggatcactta
gaaactagtctgcacaactgagagtgcagactatagaagctacagagctt
ctggaacaggcagacgctacacagcttctgggaaagaccccttttcgggc
tccagacatccgggcaccttccctgccagaggagaggtatctgcccagga
cggctctgccggagcacctggggtagcatcttgggtcacggatccctcag
agactagtctgcacaggtaagagtgcagactacagaagctacacaccttt
tgggacaggcattgttttggggtttcatcttcagccaggaggcaggtcca
aactccagatatctgtgcaccttccctgcaaggagagagcttgcctacag
agagtactctgaccattgaaactcagaagagaactataatcccaggtctg
ctgacagaggctaacagaatcacaggaggaacaagctccaaccagagaac
aactataacactaactccagagattaccagatggcgaagggcaacgcaaa
atcttactaacggaaaccaagaccactcacatcatcagaacccagcacct
ccc

gaattccacactgtttggcagcatcgatgaggcggttgggaagccccatg
gtatcgccatcattgcactatttgttcaggtaaattgtctgctgtgaggt
tatgctgtgggaagatgttttcccttagtcattgtgtggaatagtttttt
aaactctcaattttattgcttagaggtcaaattaaacacatataaatgct
cataatttgacagtcagttctcaagagttgagctatatttcttgtataaa
atagttcatttatttatcagatgttttcttcagagtggtatctggggcct
ttggagaaacaatttggaaaatatctcctgaagtcagacttcattttatt
taagaaaaagaatttcagaaaaaatttttagacccaagctcactacaaaa
atctaagaaaaatcaacactgtaatcatgtagtgagtcaccttgtctttt
tgttattaataattttcactcaaagatgatttgaaatgctttatagaaaa
caatgataaagataggctgagaccatggcagatttagccagtctaagtgg
gcattgatctctgtgaccacagtgactctaacacggtttagcaaatgcat
aaatgcataaaatggtaccatgtgccatgaagtagagatttaaaagatac
cctaaggtgagttttaaactttgtcctcagcttcatggtatgctgaagga
cttagtagagatgaaacggtccttgggaatcttagcagccttctggtctg
gaagaagagcaactaaggcccatggacagaattaaagcacctccttgcat
ttgaaatggagttctctccccatctctacttcatgtctacataggcacag
ctcaatattccttttagttttacaaccattatatgtagaaagaaatgtca
actgttgacagtaaatgtatttaattttcattgtatgaagaattaattta
gaaagacttttttctgcacctgcaaggggagtgagtattcaagttgggca
aaggtagcagtgaagacattaggatagatacgatattaaacttagagcca
caataaacagatgtcgtcgttggggtttcgtcgtttgttggggaatgtaa
cagcttcctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_7971136_7972106
seq2: B6Ng01-322F15.b_49_1019

seq1  GAATTCAGGCTTCTAATTTTTCTTCCCTCCTGTGTGCTGGTGCTTGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTCTAATTTTTCTTCCCTCCTGTGTGCTGGTGCTTGATGC  50

seq1  AATGAGATGAGAAATCATCTTTGACAATCTTCTAAGGGGAAGAGCAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGAGAAATCATCTTTGACAATCTTCTAAGGGGAAGAGCAGCAC  100

seq1  AATCCATAAAAATTTACTGATAAACTGTTTTATCCTGCATACCAAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATAAAAATTTACTGATAAACTGTTTTATCCTGCATACCAAAGTTA  150

seq1  CTGTTTTAAATCAAACATTATCAGTAATAAAATTACATTAAGTTCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAATCAAACATTATCAGTAATAAAATTACATTAAGTTCCTCTT  200

seq1  ACATGCCATCGTTGTGCTGGTCCTGTAGTGTGTTGAAATGTGTGCTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCATCGTTGTGCTGGTCCTGTAGTGTGTTGAAATGTGTGCTTCCC  250

seq1  CCAGGCCTTGAAAGAAATGAACAACTCTGCCTCCTTCCAAATGTTAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTTGAAAGAAATGAACAACTCTGCCTCCTTCCAAATGTTAGTTC  300

seq1  AACTGTATAATGTTCTTTATTTCTCAGTACATATTTTATTATTTCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATAATGTTCTTTATTTCTCAGTACATATTTTATTATTTCCTCCA  350

seq1  AATATAGAACAAATATAGCTGATCAAGTAAAATTTCTCCATGGCCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAACAAATATAGCTGATCAAGTAAAATTTCTCCATGGCCCACTG  400

seq1  AAACATGTGACTCTAAACATAGAAAATAACCATATTAAAAATTGTATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTGACTCTAAACATAGAAAATAACCATATTAAAAATTGTATAGG  450

seq1  AAAATGAATAAAAACACCTGGGGGAGCCATTTTGGGTCCAGGATCACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATAAAAACACCTGGGGGAGCCATTTTGGGTCCAGGATCACTTA  500

seq1  GAAACTAGTCTGCACAACTGAGAGTGCAGACTATAGAAGCTACAGAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGTCTGCACAACTGAGAGTGCAGACTATAGAAGCTACAGAGCTT  550

seq1  CTGGAACAGGCAGACGCTACACAGCTTCTGGGAAAGACCCCTTTTCGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGGCAGACGCTACACAGCTTCTGGGAAAGACCCCTTTTCGGGC  600

seq1  TCCAGACATCCGGGCACCTTCCCTGCCAGAGGAGAGGTATCTGCCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACATCCGGGCACCTTCCCTGCCAGAGGAGAGGTATCTGCCCAGGA  650

seq1  CGGCTCTGCCGGAGCACCTGGGGTAGCATCTTGGGTCACGGATCCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTGCCGGAGCACCTGGGGTAGCATCTTGGGTCACGGATCCCTCAG  700

seq1  AGACTAGTCTGCACAGGTAAGAGTGCAGACTACAGAAGCTACACACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGTCTGCACAGGTAAGAGTGCAGACTACAGAAGCTACACACCTTT  750

seq1  TGGGACAGGCATTGTTTTGGGGTTTCATCTTCAGCCAGGAGGCAGGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGCATTGTTTTGGGGTTTCATCTTCAGCCAGGAGGCAGGTCCA  800

seq1  AACTCCAGATATCTGTGCACCTTCCCTGCAAGGAGAGAGCTTGCCTACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGATATCTGTGCACCTTCCCTGCAAGGAGAGAGCTTGCCTACAG  850

seq1  AGAGTACTCTGACCATTGAAACTCAGAAGAGAACTATAATCCCAGGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCTGACCATTGAAACTCAGAAGAGAACTATAATCCCAGGTCTG  900

seq1  CTGACAGAGGCTAACAGAATCACAGGAGGAACAAGCTCCAACCAGAG-AC  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGACAGAGGCTAACAGAATCACAGGAGGAACAAGCTCCAACCAGAGAAC  950

seq1  AACTATAACAACTAACTCCAGA  971
      ||||||||| ||||||||||||
seq2  AACTATAAC-ACTAACTCCAGA  971


seq1: chr4_8115395_8116522
seq2: B6Ng01-322F15.g_67_1179 (reverse)

seq1  GACCAGGAAGCTGTTCCCATCTCCCCAACAAACGACGACACCCCAAACGA  50
      |||||||||||||||  ||| ||||||||||||||||| ||||| |||||
seq2  GACCAGGAAGCTGTT-ACAT-TCCCCAACAAACGACGAAACCCC-AACGA  47

seq1  CGACATCTTGTTTATTTGTGCTTCTAAGTTTATTATCCTTATTCTTATTC  100
      ||||||| |||||| |||||  |||||||||| |||| |   |||   ||
seq2  CGACATC-TGTTTA-TTGTGGCTCTAAGTTTAATATCGT--ATCT--ATC  91

seq1  CTAATGTCTTCCACTGCCTTACCTTTGCCCAACTTG-ATACTCCACTCCC  149
      |||||||||| ||||||  ||||||||||||||||| ||||| |||||||
seq2  CTAATGTCTT-CACTGC--TACCTTTGCCCAACTTGAATACT-CACTCCC  137

seq1  CTTTCCAGGTTGCAGAAAAAAGTCTTTCTAAATTAATTCTTCAATACAAT  199
      | || |||| |||||||||||||||||||||||||||||||| |||||||
seq2  C-TTGCAGG-TGCAGAAAAAAGTCTTTCTAAATTAATTCTTC-ATACAAT  184

seq1  GAAAATTAAATACATTTACTGTCAACAGTTTGACATTTCTTTCTACATAT  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAAAATTAAATACATTTACTGTCAACAG-TTGACATTTCTTTCTACATAT  233

seq1  AATGGTTGTAAAACT-AAAGGAATATTGAGCTGTGCCTATGTAGACATGA  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATGGTTGTAAAACTAAAAGGAATATTGAGCTGTGCCTATGTAGACATGA  283

seq1  AGTAGAGATGGGGAGAGAACTCCATTTCAAATGCAAGGAGGTGCTTTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGATGGGGAGAGAACTCCATTTCAAATGCAAGGAGGTGCTTTAAT  333

seq1  TCTGTCCATGGGCCTTAGTTGCTCTTCTTCCAGACCAGAAGGCTGCTAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCATGGGCCTTAGTTGCTCTTCTTCCAGACCAGAAGGCTGCTAAG  383

seq1  ATTCCCAAGGACCGTTTCATCTCTACTAAGTCCTTCAGCATACCATGAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAGGACCGTTTCATCTCTACTAAGTCCTTCAGCATACCATGAAG  433

seq1  CTGAGGACAAAGTTTAAAACTCACCTTAGGGTATCTTTTAAATCTCTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACAAAGTTTAAAACTCACCTTAGGGTATCTTTTAAATCTCTACT  483

seq1  TCATGGCACATGGTACCATTTTATGCATTTATGCATTTGCTAAACCGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCACATGGTACCATTTTATGCATTTATGCATTTGCTAAACCGTGT  533

seq1  TAGAGTCACTGTGGTCACAGAGATCAATGCCCACTTAGACTGGCTAAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACTGTGGTCACAGAGATCAATGCCCACTTAGACTGGCTAAATC  583

seq1  TGCCATGGTCTCAGCCTATCTTTATCATTGTTTTCTATAAAGCATTTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGTCTCAGCCTATCTTTATCATTGTTTTCTATAAAGCATTTCAA  633

seq1  ATCATCTTTGAGTGAAAATTATTAATAACAAAAAGACAAGGTGACTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTGAGTGAAAATTATTAATAACAAAAAGACAAGGTGACTCACT  683

seq1  ACATGATTACAGTGTTGATTTTTCTTAGATTTTTGTAGTGAGCTTGGGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTACAGTGTTGATTTTTCTTAGATTTTTGTAGTGAGCTTGGGTC  733

seq1  TAAAAATTTTTTCTGAAATTCTTTTTCTTAAATAAAATGAAGTCTGACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTTTCTGAAATTCTTTTTCTTAAATAAAATGAAGTCTGACTT  783

seq1  CAGGAGATATTTTCCAAATTGTTTCTCCAAAGGCCCCAGATACCACTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATATTTTCCAAATTGTTTCTCCAAAGGCCCCAGATACCACTCTG  833

seq1  AAGAAAACATCTGATAAATAAATGAACTATTTTATACAAGAAATATAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACATCTGATAAATAAATGAACTATTTTATACAAGAAATATAGCT  883

seq1  CAACTCTTGAGAACTGACTGTCAAATTATGAGCATTTATATGTGTTTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTGAGAACTGACTGTCAAATTATGAGCATTTATATGTGTTTAAT  933

seq1  TTGACCTCTAAGCAATAAAATTGAGAGTTTAAAAAACTATTCCACACAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTAAGCAATAAAATTGAGAGTTTAAAAAACTATTCCACACAAT  983

seq1  GACTAAGGGAAAACATCTTCCCACAGCATAACCTCACAGCAGACAATTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGGAAAACATCTTCCCACAGCATAACCTCACAGCAGACAATTTA  1033

seq1  CCTGAACAAATAGTGCAATGATGGCGATACCATGGGGCTTCCCAACCGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACAAATAGTGCAATGATGGCGATACCATGGGGCTTCCCAACCGCC  1083

seq1  TCATCGATGCTGCCAAACAGTGTGGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TCATCGATGCTGCCAAACAGTGTGGAATTC  1113


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