BAC Information

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BAC

Clone NameB6Ng01-322L17
Chromosome4 (Build37)
Map Location 143,891,285 - 143,892,324
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150
Downstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322L17.bB6Ng01-322L17.g
ACCGA111498GA111499
length1,1171,035
definitionB6Ng01-322L17.b B6Ng01-322L17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaatacttttatcatgaatgggtgttggatattg
tcaaatgctttctctgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatatagtgtattacattgatggatttccatatgttaaacc
atccctgaatcattggaattaaatttacttggtcaggatggatgattgtt
ttgatgtgttcttggattcgattagcagtaattttattgagtatttttgc
atcaatattcataagggaaattggtctgaagtctctatctttgttgggtc
tttctgtcgttcaggtatccgagtaattgtggcttcatgaaaagaattgg
ttagagtaccttctgtttctattttgtggaatagtttttgaagatattgt
ttgaaggttgatagaactctgcactaaacccatcggttcctgggcttttt
tatttttttttggttgggagactactaatgactgcttctattcctttagt
ggatataagactgtttagatcattaacctgatcctgatttaactttggta
cctggtatctgtctaggaatttgtccatttcatcgaagttttccagtttt
gttgagtatagccttttgtagaaggatctgatggtgttttggatttctcc
aggatctgttgttatgtctcccttttcatttctgcttttgttaatttgga
tgctgtccctgtgccctctagtgagtctggctaagggtttatctattttg
ttgattttctcaaataaccagctcctggtttggttgagtctttgaaagtt
ctttcttgtgtccacttgggttgattttgcccctgagttttattattccc
tgctatctactcctcttgggtgaatttgctttccttttgttctagagctt
ttagtgtgtgtcaagctgctagtatgtgctctctctagtttatttttgga
ggcatgagttttcctctagaatgctcttatatgtcccataattgggtatg
tgtgcttcagttcattaatttcaaaagtccttaatttctttccttatcct
tccttgacaagtcattattgagaaaatgctcctccgttacacgtgatgtt
tggctttcctattatta
gaattcaaatccaatctttcagatttgaagtaagactgttgatatggtga
accagatgttatttttagcctaatgtctacagtacagacccagcctgtac
tgtagggcttgcatcccagcacttttttttttggtaagttttatttattc
tatgtatatgaatacactgttgctgtcttcagacacaccagaagagggca
tcaaatcccttggttgtgagctaccatgtggctgctggtaactgaactca
ggacctctggaagagtagtcactgctcttagctactgaaaaatatctcca
gccctcatcctagcactttcttttttttctttctttctctctctttcttt
ctctctttctttctttcattctttctttccttctctttttctttctctct
ttctttctttcttttttcttctttctttctctctttctttccttctttct
ctctttctttccttccttccttccttccttccttctttctctctttcttt
ctttcttccttcctttctttccttctttctttctctctctctttctttcc
ttcctcctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttccttctctcattct
ttctctctctctctccctccctccctctttctttcttttcttttcttttc
ttttcttttcttttcttttttttttgagacagccttggatgtcctggaac
tcactctgtagacctggctggccttgaactcctaaatctccctgtttctg
cctcccaagtgctgagatttaaaggcatgtgccaccactgccggcctaat
aaaggacttttgaaaagagtatgttgtaagcttttcacttactgagtaag
attgtttaaacacctcatattgcatgcagtgcattgtactcgtatcattt
tgttgtctgccctgtcctcctagatttttcagagtaaataatgacttcat
atgcctctttctcttctattgcaatatatattgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143891285_143892324
seq2: B6Ng01-322L17.g_69_1102 (reverse)

seq1  GCAATATATAATTTGCAATAGAAGAG-AAGAGGCATATTGAGTCATTATT  49
      ||||||||||  |||||||||||||| |||||||||||  ||||||||||
seq2  GCAATATATA--TTGCAATAGAAGAGAAAGAGGCATATGAAGTCATTATT  48

seq1  TACTCTGAAAAATCTAGGAGGACAGGGCAGAC-ACAAAATGATACGAGTA  98
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TACTCTGAAAAATCTAGGAGGACAGGGCAGACAACAAAATGATACGAGTA  98

seq1  CAATGCACTGCATGCAATTATGA-GTGTTTAAAACAAATCTTACTCAGTA  147
      ||||||||||||||||| ||||| |||||||||   ||||||||||||||
seq2  CAATGCACTGCATGCAA-TATGAGGTGTTTAAA--CAATCTTACTCAGTA  145

seq1  AGTGAAAAGCTTACAACATACTCTTTTTCAAAAGTCCTTTATTAGGCCGG  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTGAAAAGCTTACAACATACTC-TTTTCAAAAGTCCTTTATTAGGCCGG  194

seq1  CAGTGGTGGCACATGCCTTT-AATCTCAGCACTTGGGAGGCAGAAACAGG  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGTGGTGGCACATGCCTTTAAATCTCAGCACTTGGGAGGCAGAAACAGG  244

seq1  GAGATTTAGGAGTTCAAGGCCAGCCAGGTCTACAGAGTGAGTTCCAGGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAGGAGTTCAAGGCCAGCCAGGTCTACAGAGTGAGTTCCAGGAC  294

seq1  ATCCAAGGCTGTCTCAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGCTGTCTCAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAA  344

seq1  GAAAAGAAAGAAAGAGGGAGGGAGGGAGAGAGAGAGAGAAAGAATGAGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGAAAGAGGGAGGGAGGGAGAGAGAGAGAGAAAGAATGAGAG  394

seq1  AAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  446
      |||    |||||||||||||||||||||||||||||||||||||||||||
seq2  AAG----GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  440

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAGGAAGGAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAGGAAGGAAAG  490

seq1  AAAGAGAGAGAGAAAGAAAGAAGGAAAGAAAGGAAGGAAGAAAGAAAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAAAGAAAGAAGGAAAGAAAGGAAGGAAGAAAGAAAGAA  540

seq1  AGAGAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAGAGAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAGAGAAAG  590

seq1  AAGGAAAGAAAGAGAGAAAGAAAGAAGAAAAAAGAAAGAAAGAAAGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGAAAGAGAGAAAGAAAGAAGAAAAAAGAAAGAAAGAAAGAGAG  640

seq1  AAAGAAAAAGAGAAGGAAAGAAAGAATGAAAGAAAGAAAGAGAGAAAGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAGAGAAGGAAAGAAAGAATGAAAGAAAGAAAGAGAGAAAGAA  690

seq1  AGAGAGAGAAAGAAAGAAAAAAAAGAAAGTGCTAGGATGAGGGCTGGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGAAAGAAAAAAAAGAAAGTGCTAGGATGAGGGCTGGAGA  740

seq1  TATTTTTCAGTAGCTAAGAGCAGTGACTACTCTTCCAGAGGTCCTGAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCAGTAGCTAAGAGCAGTGACTACTCTTCCAGAGGTCCTGAGTT  790

seq1  CAGTTACCAGCAGCCACATGGTAGCTCACAACCAAGGGATTTGATGCCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCAGCAGCCACATGGTAGCTCACAACCAAGGGATTTGATGCCCT  840

seq1  CTTCTGGTGTGTCTGAAGACAGCAACAGTGTATTCATATACATAGAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTGTGTCTGAAGACAGCAACAGTGTATTCATATACATAGAATAA  890

seq1  ATAAAACTTACCAAAAAAAAAAGTGCTGGGATGCAAGCCCTACAGTACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTACCAAAAAAAAAAGTGCTGGGATGCAAGCCCTACAGTACAG  940

seq1  GCTGGGTCTGTACTGTAGACATTAGGCTAAAAATAACATCTGGTTCACCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCTGTACTGTAGACATTAGGCTAAAAATAACATCTGGTTCACCA  990

seq1  TATCAACAGTCTTACTTCAAATCTGAAAGATTGGATTTGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACAGTCTTACTTCAAATCTGAAAGATTGGATTTGAATTC  1034