BAC Information

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BAC

Clone NameB6Ng01-323M18
Chromosome4 (Build37)
Map Location 132,013,079 - 132,150,147
singlet/doubletdoublet
Overlap geneMed18, Sesn2, Atpif1, Dnajc8, Ptafr
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4
Downstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323M18.bB6Ng01-323M18.g
ACCGA112282GA112283
length1,0261,094
definitionB6Ng01-323M18.b B6Ng01-323M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,013,079 - 132,014,106)(132,149,053 - 132,150,147)
sequence
gaattcatggccgtcctggaataccaaaagttctggaacttactctgttt
accacgctggccccaaacttagtgatctgtatttctctgcctcctgagtg
ctgggccaccatgcctggctgataaaaaaataaatttttttaatttccaa
aacctatcaaccactgtgtacaggcagtggtttgtagacctccacagcta
cacatgcaggtgtagcaaaaatagaaccatctctggtattttattggtta
taaaatgttccatcaacaaaaatgtccttttcctctgtgtgtgtttgagt
gtgcctgtggtttgatacaggatcttgctgtcgctccccctgacctggat
tttgtgatcctcctgtctcagcctccccatgccctgataacaggatggct
caaatatactactttcatgaaagattaaaacatctctacaaaaaataact
gctagggaccggggctgtatttcgggggataaaacattgctaatcaaaca
cacaaacctgatttcaggtcccgggcagcatctggaggcagtgactggct
tttgctaaccctgctgctgcaaggagggtggaaagaacaaagctaagggg
cccctggctggtgtctagatgaaactgagctgcaagctgtgagagatctc
atctggaaaggaaaggtggataaaggagcttgctgccaggtcggacaacc
tgagttccacactcaggcccccggatggtgaaaatacacaactgctggaa
gctggcctctgatcccatgtgcacaaaagcacatgcacacctgagaccta
ataaataactgtaatccaaaacagaaagtagatgagccaacagaaatttc
actaagctgttggtatgatcctgtgtaagactcctataaaaaagaaaatg
gactgaaacttttgcttgcccgaaaatgaataaaaaagatactaatgaga
gaaggagacgagaaaatgtatctgactttcaaatctagactgatgagcat
ttgatttttcttcttctgctgtagcc
gaattctctcagctacccacagtctcttgttgggagctgtcatgaaaggc
agggcaacgaagaggagggtttagaatccgcgtaacctgggacacacagc
ttaactttatgagccctctgtgtctgtctgaacattacattaaaggtctc
aaacctcccagaactcccatggaaaagcacttaaccatgcttccacattc
cacagccttcccctgccactatccacaacagattctggacttctctcacc
ttctcctggtcttgacttttcccaagacaaagaaatttgacaagaaaacc
ctgccaggatcaaatcaaatgcaaagctttttccctgattgttttttttt
aatttaatttaattttattttatttttcttctccccattttaaactgaga
gaaactgagtcttacccaccactaatgatctctccttccctctctccttt
cctttctccccatgtgccaggtgagcactgtatcactgagccacaacccc
aaccccttaggagttttgtttagttcttgttcttaagatttatttattaa
agtgtctatgaatgaaagagagacagagacagagagacagagactgacag
agagtttatttgtgtgtgagagagaatctatgcactccacagggatgccg
gagccttcataagtcagaagtggatgtcgggttccctggaattagagctg
tgggtggttgtgtactatcaagcgggagctaagacctgatccaggctcct
ccacaagagcagcaattgctcttactgctgagccatctctcctgccactt
gtttttgattttgagacagggtctcacaggatagcccatactagtctgga
actttaatacataggtcacgcagatgctgaactcacagcagtgctcctga
cctcaacctcccacgaactggattcggtctattacctcataatctctccg
tcatagtactgggcattacatggcatgcgtccaccacatctgggtaggta
ccaactctctaagatgatgcattctctctctgacctttcacacgatgaat
atatatgtcaaaagagcctcacattcatctgatgtgtccgtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132013079_132014106
seq2: B6Ng01-323M18.b_42_1067

seq1  GAATTCAAGGCCAGCCTGGTATACAAAAAGTTCTGGAACTTACTCTGTAG  50
      ||||||| ||||  ||||| |||| |||||||||||||||||||||||  
seq2  GAATTCATGGCCGTCCTGGAATACCAAAAGTTCTGGAACTTACTCTGTTT  50

seq1  ACCAGGCTGGCCCCAAACTTAGTGATCTGTATTTCTCTGCCTCCTGAGTG  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCTGGCCCCAAACTTAGTGATCTGTATTTCTCTGCCTCCTGAGTG  100

seq1  CTGGGCCACCATGCCTGGCTGAGAAAAAAATAAATTTTTTTAAGTTCCAA  150
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  CTGGGCCACCATGCCTGGCTGATAAAAAAATAAATTTTTTTAATTTCCAA  150

seq1  AACCTAGCAACCACAGTGTACAGGCAGTGGTTTGTAGACCTCCACAGCTA  200
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCTATCAACCACTGTGTACAGGCAGTGGTTTGTAGACCTCCACAGCTA  200

seq1  CACATGCAGGTGTAGCAAAAATAGAACCATCTCTGGTATTTTATTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACATGCAGGTGTAGCAAAAATAGAACCATCTCTGGTATTTTATTGGTTA  250

seq1  TAAAATGTTCCATCAACAAAAATGTCCTTTTCCTCTGTGTGTGTTTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTCCATCAACAAAAATGTCCTTTTCCTCTGTGTGTGTTTGAGT  300

seq1  GTGCCTGTGGTTTGAGACAGGATCTTGCTGTCGCTCACGCTGACCTGGAT  350
      ||||||||||||||| |||||||||||||||||||| | |||||||||||
seq2  GTGCCTGTGGTTTGATACAGGATCTTGCTGTCGCTCCCCCTGACCTGGAT  350

seq1  TTTGTGATCCTCCTGTCTCAGCCTCCCCATGCCCTGATAACAGGATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATCCTCCTGTCTCAGCCTCCCCATGCCCTGATAACAGGATGGCT  400

seq1  CAAATATACTACTTTCATGAAAGATTAAAACATCTCTACAAAGAATAACT  450
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAATATACTACTTTCATGAAAGATTAAAACATCTCTACAAAAAATAACT  450

seq1  GCAAGGGACCGGGGCTGTAGTTCAGGGGATAAAACATTGCTAAGCAAACA  500
      || |||||||||||||||| ||| ||||||||||||||||||| ||||||
seq2  GCTAGGGACCGGGGCTGTATTTCGGGGGATAAAACATTGCTAATCAAACA  500

seq1  CACAAACCTGAGTTCAGGTCCCGGGCAGCAGCTGGAGGCAGTGACTGGCT  550
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CACAAACCTGATTTCAGGTCCCGGGCAGCATCTGGAGGCAGTGACTGGCT  550

seq1  TTTGCTAACCCTGCTGCTGCAGGGAGGGTGGAAAGAAGAAAGCTAAGGGG  600
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TTTGCTAACCCTGCTGCTGCAAGGAGGGTGGAAAGAACAAAGCTAAGGGG  600

seq1  CCCCTGGCTGGTGTCTAGATGAAACTGAGCTGCAGGCTGTGAGAGATCTC  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCTGGCTGGTGTCTAGATGAAACTGAGCTGCAAGCTGTGAGAGATCTC  650

seq1  ATCTGGAAAGGAAAGGTGGATAAAGGAGCTTGCTGCCAGGCCGGACAACC  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTGGAAAGGAAAGGTGGATAAAGGAGCTTGCTGCCAGGTCGGACAACC  700

seq1  TGAGTTCCACACTCAGG-CCCCGGATGGTGAAAATACAGAACTGCTGGAA  749
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  TGAGTTCCACACTCAGGCCCCCGGATGGTGAAAATACACAACTGCTGGAA  750

seq1  GCTGGCCTCTGATCCCATGTGCACAGAAGCACATGCACACGTGAGACCTA  799
      ||||||||||||||||||||||||| |||||||||||||| |||||||| 
seq2  GCTGGCCTCTGATCCCATGTGCACAAAAGCACATGCACACCTGAGACCT-  799

seq1  AAGAAATAACTGTAATCTAAAACAGAAGGTAGATGAGCCAACAGTAAATT  849
      || |||||||||||||| ||||||||| |||||||||||||||| |||||
seq2  AATAAATAACTGTAATCCAAAACAGAAAGTAGATGAGCCAACAG-AAATT  848

seq1  TCACTAAGGCTGTTGGTAGGATCCTGGGTAAGACTCCTATAAAAAAGAAA  899
      ||||||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  TCACTAA-GCTGTTGGTATGATCCTGTGTAAGACTCCTATAAAAAAGAAA  897

seq1  GTGGACTGAAAGTTTT-CCTGGCAGAAAAAGAAAAAAAAAGAAAAAGAAA  948
       |||||||||| |||| | || | ||||| ||| ||||||| | |  || 
seq2  ATGGACTGAAACTTTTGCTTGCCCGAAAATGAATAAAAAAG-ATACTAAT  946

seq1  AAGAGAAGGAGAAGGAGAAAAAGTATCTGACTTTTCAAATCTAAGACT-A  997
       |||||||||| | ||||||| ||||||||| |||||||||| ||||| |
seq2  GAGAGAAGGAG-ACGAGAAAATGTATCTGAC-TTTCAAATCT-AGACTGA  993

seq1  TGAGCCTTTTGTCTTTCTTC-TCTG-TGTAGCC  1028
      ||||| |||  | ||||||| |||| |||||||
seq2  TGAGCATTTGATTTTTCTTCTTCTGCTGTAGCC  1026

seq1: chr4_132149053_132150147
seq2: B6Ng01-323M18.g_63_1156 (reverse)

seq1  GTGACAGACACATCAGATGAATTTGTGAGGCTCTTTGAACATAAATTATA  50
      ||||| |||||||||||||||  |||||||||||||  |||||   ||||
seq2  GTGACGGACACATCAGATGAA--TGTGAGGCTCTTTTGACATA---TATA  45

seq1  -TCATCGTGGTGGAAAGTCAGAGGAGAGAATTGCATCATCTTAGA-AATT  98
       ||||||| ||| || |||||| ||||||| |||||||||||||| | ||
seq2  TTCATCGT-GTGAAAGGTCAGA-GAGAGAA-TGCATCATCTTAGAGAGTT  92

seq1  TGTTCCT-CCCAGGTGTGGTGG-CGCATGCC-TGTAAT-CCCCGTACTAT  144
       || ||| ||||| |||||||| |||||||| |||||| ||| |||||||
seq2  GGTACCTACCCAGATGTGGTGGACGCATGCCATGTAATGCCCAGTACTAT  142

seq1  GGCGGAGAGA-TAAGAGGAAAAAAACCAAAACAAGCTAGTTGGAGGCTGA  193
      | |||||||| || |||| || | ||| || | || | || ||||| |||
seq2  GACGGAGAGATTATGAGGTAATAGACCGAATCCAGTTCGTGGGAGGTTGA  192

seq1  GG-CAGGAGGACTGCTGTGAGTTCAACATCAGCCTGAGCTATGTATTAAA  242
      || |||||| ||||||||||||||| |||| || ||| ||||||||||||
seq2  GGTCAGGAGCACTGCTGTGAGTTCAGCATCTGCGTGACCTATGTATTAAA  242

seq1  GTTCCAGACTAGTCTGGGCTATAATGTGAGACCCTGTCTCAAAAATCAAA  292
      ||||||||||||| ||||||||  ||||||||||||||||||||   |||
seq2  GTTCCAGACTAGTATGGGCTATCCTGTGAGACCCTGTCTCAAAATCAAAA  292

seq1  ACAAGTGGCAGGAGAGATGGCTCAGCAGTTAAGAGCAATTGCTGCTCTTG  342
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAAGTGGCAGGAGAGATGGCTCAGCAG-TAAGAGCAATTGCTGCTCTTG  341

seq1  TGGAGGAGCCTGGATCAGGTCTTAGCTCCCACTTGGTAGTACACAACCAC  392
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TGGAGGAGCCTGGATCAGGTCTTAGCTCCCGCTTGATAGTACACAACCAC  391

seq1  CCACAGCTCTAATGCCAGGGAACCCGACATCCACTTCTGACTTCTGAAGG  442
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CCACAGCTCTAATTCCAGGGAACCCGACATCCACTTCTGACTTATGAAGG  441

seq1  CTCCGGCATCCCTGTGGAGTGCATAGATTCTCTCTCACACACAAATAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCATCCCTGTGGAGTGCATAGATTCTCTCTCACACACAAATAAAC  491

seq1  TCTCTGTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTTTCATTCATAGAC  542
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAGTCTCTGTCTCTCTGTCTCTGTCTCTCTTTCATTCATAGAC  541

seq1  ACTTTAATAAATAAATCTTAAGAACAAGAACTAAACAAAACTCCTAAGGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATAAATAAATCTTAAGAACAAGAACTAAACAAAACTCCTAAGGG  591

seq1  GTTGGGGTTGTGGCTCAGTGATACAGTGCTCACCTGGCACATGGGGAGAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTTGTGGCTCAGTGATACAGTGCTCACCTGGCACATGGGGAGAA  641

seq1  AGGAAAGGAGAGAGGGAAGGAGAGATCATTAGTGGTGGGTAAGACTCAGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAGAGAGGGAAGGAGAGATCATTAGTGGTGGGTAAGACTCAGT  691

seq1  TTCTCTCAGTGTAAAATGGGGAGAAGAAAAATAAAATAAAATTAAATTAA  742
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCAGTTTAAAATGGGGAGAAGAAAAATAAAATAAAATTAAATTAA  741

seq1  ATTAAAAAAAAACAATCAGGGAAAAAGCTTTGCATTTGATTTGATCCTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAAACAATCAGGGAAAAAGCTTTGCATTTGATTTGATCCTGG  791

seq1  CAGGGTTTTCTTGTCAAATTTCTTTGTCTTGGGAAAAGTCAAGACCAGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTCTTGTCAAATTTCTTTGTCTTGGGAAAAGTCAAGACCAGGA  841

seq1  GAAGCTGAGAGAAGTCCAGAATTTGTTGTGGATAGTGGCAGGGGAAGGCT  892
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGGTGAGAGAAGTCCAGAATCTGTTGTGGATAGTGGCAGGGGAAGGCT  891

seq1  GTGGAATGTGGAAGCATGGTTAAGTGCTTTTCCATGGGAGTTCTCTGAGG  942
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GTGGAATGTGGAAGCATGGTTAAGTGCTTTTCCATGGGAGTTCTGGGAGG  941

seq1  TTTGAGACCTTTAATCTAATGTTCAGACAGACACACTGGGCTCATAAAGT  992
      ||||||||||||||| |||||||||||||||||||  |||||||||||||
seq2  TTTGAGACCTTTAATGTAATGTTCAGACAGACACAGAGGGCTCATAAAGT  991

seq1  TAAGCTGTCTGTCCCAGGTTACGTGGATTCTAAACCCTCCTCTTCGTTGC  1042
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TAAGCTGTGTGTCCCAGGTTACGCGGATTCTAAACCCTCCTCTTCGTTGC  1041

seq1  CCTGCCTCTCATGACAGCTCCCAACAAGAGACTGTGGGTAGCTGAGAGAA  1092
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTCATGACAGCTCCCAACAAGAGACTGTGGGTAGCTGAGAGAA  1091

seq1  TTC  1095
      |||
seq2  TTC  1094