BAC Information

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BAC

Clone NameB6Ng01-323P24
Chromosome4 (Build37)
Map Location 145,418,911 - 145,480,869
singlet/doubletdoublet
Overlap gene1700029I01Rik, LOC236069, LOC384084
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323P24.bB6Ng01-323P24.g
ACCGA112431GA112432
length1,1601,129
definitionB6Ng01-323P24.b B6Ng01-323P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,479,686 - 145,480,869)(145,418,911 - 145,420,000)
sequence
gaattcatgtcatattctgaaatctaatcaagaacaggaagtatgttagg
tcatgagaactatgaggccattttaagaaatggtatcatctaaaattatc
atagttatgttgtgttctcttctctcagtaaaaggtagatgagttaatgg
actcagactcacagcataatttagacactgtaatgtatatatttgaggac
tacatccaggaatatatgtttatgaacacttttttgataaaaagaacaat
tccagtgttacatctagtttacagatagtaaagtgatggtgagtaaaact
gtgcttccaaattctacaactgtcagttttgctcagataggaaccctgta
tctctcttgtctgaagttgggtgtcaacaagtagtctaagatgctcagtt
tggattgtaagacctatatacaatggagcatcctttctaggagaaagaaa
gagagttagaacaccaaatacaagaatgacttaaaaaaatacgtttcttt
ctatggtagagttgggaagtataaagtcagtgtatacaaacaaaattaca
aacaagacatagaatcaaatactttgtgatatgattttataagaatttta
catgaagaagagttaaatgattgtttaatgaagaattaatttgagaataa
tgatataaataaaaagttagcaataggtatcattaatataatataatgtt
tttgactatatgacaaaatcaatacagataataatttcataacttacaca
gtggattccctgcagaatggttagacatacatgtataactaaatgacata
tgtgaaaaaagtgataaagtaaaatgatttttataatggaaataaccaca
ttaagatgtataaaaatcatactaaaacttcatttttatggatatattat
tactcatgaatctattactggcacaactgaaaatatgaaacttttggact
tcagcaatattcttctctttattatttgagctcattgatctacatgatta
tagatacacaaaaaaggaatcatctaagtctttgactcattcctatcttt
ctttttatttaatttatggttaattagtattttctattacattcatgcta
tggcaaaagtcccaggaaagtccaacttacatgtaagcggttggcccata
aagtatcatt
gaattcatcagagaattcatacaggagagaaaccttacaaatgcactgaa
tgtgacaaatgctttactttcaaaggcagtctgaggattcatcagagaat
tcatacaggagagaaaccttacaaatgcactgaatgtgacaaatccttta
ctgaaaagggcaaactgagaattcatcagagaattcatacaggagagaaa
ccttacaaatgtagtgaatgtgacaaatgctttactgaaaaaggccatca
gagaattcatacaggagagataccttacaaatagtttgtatgtgacaaat
acaatacaatgtcagtctgagaaatcatcagtttttaatacagtagagaa
tatttataaatgaagtgaatgagacaatcctttaccaagatatatcatct
taaaaatcattagagaatacttacagaagagaaacttttcaattatatcg
aaggtatgaatcctttactcttggcctatttcctagaatgttaacagtga
atacttacaggatacaaacttaactcatgcattgtatgaagaaatatctt
tgacttcatttcaggtcaaagagaatatctaataactttttaggggaaag
tatttctgttggggaaagtgtggcctgtgttttattcacgttctattctt
gacaacaattgaggctccacactagagaattagtatgattatgaaaatca
tgtgaaaactttcatgcaatgttcaaatcttaaataatgtcaactatttt
ttgcttgaagaaactctgaaaatgtaaaaatgtagaaagcttttcatgac
acctttttacttgttcacccttaaatgttacaagatgaagacaagttggg
aagtgaggagatattattgtgtaccacattcattgagacagaaaatatcc
atttcaaaggaaactatttaaggtctttaaatgcagtcctcaaaatatct
aataaaactggtaacattctgtatatttaattcaaatgagccaattggag
aaaattatacttaagatattcttgggcaaactggagccacccagacagca
tatcttattctattaaaatatgcttacagattgtgagtgtgctcgagtat
cagtaataatattcttcttcaaatgcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145479686_145480869
seq2: B6Ng01-323P24.b_46_1205 (reverse)

seq1  AATGATACTTATAT-GCCCAACCGCTAACCATGTTAGAGTGGGGGGCTCT  49
      |||||||||| ||| | ||||||||| | ||||| |    |  || || |
seq2  AATGATACTT-TATGGGCCAACCGCTTA-CATGTAA----GTTGGACTTT  44

seq1  -CTGGGACTTTTGGCATAGCATTTGAAATGTAAATTAAGAAAATACCTAA  98
       |||||||||||| ||||||||    |||||||    |||||||| ||||
seq2  CCTGGGACTTTTGCCATAGCAT---GAATGTAA---TAGAAAATA-CTAA  87

seq1  TTTAAAACAATAAAATAAAATAAAAAAAAGAAAAGAATAGGAATGAAGTC  148
      ||   ||| ||||| ||||  |||| ||||      ||||||||| ||||
seq2  TT---AACCATAAATTAAATAAAAAGAAAG------ATAGGAATG-AGTC  127

seq1  AAAGAACCTTAGATGATTCCTTTTTTGTGTAATCTATAATCATGTTAGAT  198
      |||||  ||||||||||||||||||||||| ||||||||||||| |||||
seq2  AAAGA--CTTAGATGATTCCTTTTTTGTGT-ATCTATAATCATG-TAGAT  173

seq1  CAATGAGCTCAAATAATAAAGAGAAGAATATTGCTGAAGT-CAAAAGTTT  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATGAGCTCAAATAATAAAGAGAAGAATATTGCTGAAGTCCAAAAGTTT  223

seq1  CATATTTTCAGTTGTGCCAGTAATAGATTCATGAGTAATAATATATCCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCAGTTGTGCCAGTAATAGATTCATGAGTAATAATATATCCAT  273

seq1  AAAAATGAAGTTTTAGTATGATTTTTATACATCTTAATGTGGTTATTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAGTTTTAGTATGATTTTTATACATCTTAATGTGGTTATTTCC  323

seq1  ATTATAAAAATCATTTTACTTTATCACTTTTTTCACATATGTCATTTAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATCATTTTACTTTATCACTTTTTTCACATATGTCATTTAGT  373

seq1  TATACATGTATGTCTAACCATTCTGCAGGGAATCCACTGTGTAAGTTATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTATGTCTAACCATTCTGCAGGGAATCCACTGTGTAAGTTATG  423

seq1  AAATTATTATCTGTATTGATTTTGTCATATAGTCAAAAACATTATATTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTATCTGTATTGATTTTGTCATATAGTCAAAAACATTATATTAT  473

seq1  ATTAATGATACCTATTGCTAACTTTTTATTTATATCATTATTCTCAAATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGATACCTATTGCTAACTTTTTATTTATATCATTATTCTCAAATT  523

seq1  AATTCTTCATTAAACAATCATTTAACTCTTCTTCATGTAAAATTCTTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCATTAAACAATCATTTAACTCTTCTTCATGTAAAATTCTTATA  573

seq1  AAATCATATCACAAAGTATTTGATTCTATGTCTTGTTTGTAATTTTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATCACAAAGTATTTGATTCTATGTCTTGTTTGTAATTTTGTTT  623

seq1  GTATACACTGACTTTATACTTCCCAACTCTACCATAGAAAGAAACGTATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACTGACTTTATACTTCCCAACTCTACCATAGAAAGAAACGTATT  673

seq1  TTTTTAAGTCATTCTTGTATTTGGTGTTCTAACTCTCTTTCTTTCTCCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTCATTCTTGTATTTGGTGTTCTAACTCTCTTTCTTTCTCCTA  723

seq1  GAAAGGATGCTCCATTGTATATAGGTCTTACAATCCAAACTGAGCATCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATGCTCCATTGTATATAGGTCTTACAATCCAAACTGAGCATCTT  773

seq1  AGACTACTTGTTGACACCCAACTTCAGACAAGAGAGATACAGGGTTCCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTTGTTGACACCCAACTTCAGACAAGAGAGATACAGGGTTCCTA  823

seq1  TCTGAGCAAAACTGACAGTTGTAGAATTTGGAAGCACAGTTTTACTCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAAACTGACAGTTGTAGAATTTGGAAGCACAGTTTTACTCACC  873

seq1  ATCACTTTACTATCTGTAAACTAGATGTAACACTGGAATTGTTCTTTTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTACTATCTGTAAACTAGATGTAACACTGGAATTGTTCTTTTTA  923

seq1  TCAAAAAAGTGTTCATAAACATATATTCCTGGATGTAGTCCTCAAATATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGTGTTCATAAACATATATTCCTGGATGTAGTCCTCAAATATA  973

seq1  TACATTACAGTGTCTAAATTATGCTGTGAGTCTGAGTCCATTAACTCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACAGTGTCTAAATTATGCTGTGAGTCTGAGTCCATTAACTCATC  1023

seq1  TACCTTTTACTGAGAGAAGAGAACACAACATAACTATGATAATTTTAGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTACTGAGAGAAGAGAACACAACATAACTATGATAATTTTAGAT  1073

seq1  GATACCATTTCTTAAAATGGCCTCATAGTTCTCATGACCTAACATACTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATTTCTTAAAATGGCCTCATAGTTCTCATGACCTAACATACTTC  1123

seq1  CTGTTCTTGATTAGATTTCAGAATATGACATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGATTAGATTTCAGAATATGACATGAATTC  1160

seq1: chr4_145418911_145420000
seq2: B6Ng01-323P24.g_109_1197

seq1  ATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTC  50

seq1  ATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGAC  100

seq1  AAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAC  150

seq1  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAA  200

seq1  AAGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCAGAGAATTCATACAGGAGAGATACCTTACAAATAGTTTGTA  250

seq1  TGTGACAGATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATA  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATA  300

seq1  CAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGA  350

seq1  TATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTC  400

seq1  AATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATG  450

seq1  TTAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAA  500

seq1  GAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTT  550

seq1  TAGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACG  600

seq1  TTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATT  650

seq1  ATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGT  700

seq1  CAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGC  750

seq1  TTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTACAAGATGAAG  800

seq1  ACAAGTTGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGACA  850

seq1  GAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTT-AATGCAGTCC  899
      ||||  ||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GAAAATATCCATTTC-AAAGGAAACTATTTAAGGTCTTTAAATGCAGTCC  899

seq1  TCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTCAAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATCTAATAAAACTGGTAACATTCTGTATATTTAATTCAAATGA  949

seq1  GCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAACT-GAGCCA  998
      ||||||||   |||||||||||||| | | | |  |||||||| ||||||
seq2  GCCAATTGGAGAAAATTATACTTAAGATATTCTTGGGCAAACTGGAGCCA  999

seq1  CCCAGACAGCATATTCTTTATCCTAT--AAATATGCTTACAGATGTTAAG  1046
      ||||||||||||||   |||| ||||  ||||||||||||||||  | ||
seq2  CCCAGACAGCATAT--CTTATTCTATTAAAATATGCTTACAGATTGTGAG  1047

seq1  TGTGCTTCGAGTATTCAGTAATAATAATTCTTC-TCAAATGCTTG  1090
      ||||| ||||||| ||||||||||| ||||||| |||||||||||
seq2  TGTGC-TCGAGTA-TCAGTAATAAT-ATTCTTCTTCAAATGCTTG  1089