BAC Information

Click to search

BAC

Clone NameB6Ng01-324B09
Chromosome4 (Build37)
Map Location 124,717,500 - 124,830,645
singlet/doubletdoublet
Overlap geneGnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324B09.bB6Ng01-324B09.g
ACCGA112493GA112494
length1,1741,133
definitionB6Ng01-324B09.b B6Ng01-324B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,717,500 - 124,718,691)(124,829,509 - 124,830,645)
sequence
gaattcctacgcctgtaactccttcacagcgcatcaagttctagttagga
tcaggttccttttatcacatctaacctattattttggacttttgctagat
gtttttcatctgaagcgtttccatgtgcatttaataaaaacgttacctaa
attagggaaaatgttatctgaaactaaaatgcatcttataaaacaagcaa
ttccttttagccatgagagaaattaatttccaagaaaaagttggcattta
cagttggtttaaaaaagaaaaaaacacacacacattttgactgattgtcc
ttgacaaaacctgtgaatttggcgaattttatgcacttgtttggaagctc
caaaaaagggtcagaaaagatcagttaattttcatcgttgtagcactgat
tatatgtgactggagtctgtgatgggtgaaggaaagcagagtttggcaag
tctcacatggctgttcttactcggtgtctgtgttacctttacatactgca
gggaagctcacagcatttcagaatagaagaagcccttgtgcaatataaac
acgcattacagatttgaaacttcactgagtctgtgctcttgtggtttttg
gtgtggtttgagctttttagtttactttggctcagtatttttctttcctg
agtcttacctgcacttctcctttgtctttagaacgcaaaagtccacattc
ttgatactgaaagctttgaaagtacatttggcccaaagtcacagagaaag
cggccaaacttgtttgcaagtgatatgcaatcccttctagaaaacgctga
aatgtctactgagagctatgaccagggcaaggaccgtgatttggtgatgg
gaggacactggtgtaaaggtacgcatttgaggtctcatctttgctactgt
gctacagaatgtttcccttatgctgtggggacagggattgcacacacagc
tagtttcttctccctcagactagaggcatcaatgcactagagccagacca
aaaatacttttgcaaggcttcatcacacatacccctctgataccaaggaa
agattatgttttctctgcagtggtgtgcatgtattctaaattcgaggtag
taatgttggaaattgacactttggcttctgatctctagaacactgcagta
tagtgatctttttcctggaccctc
gaattcaagagcgaaattaacaggtcttttcattgtctgctccgtattta
ccaagtcacacatcatctacctactcctagctaaattaacactttcataa
ataaggcaacttcacaggtttctacccctgcagctcccataaggagagag
gctagtgttcacagcgaggccttggcgtgggcacactgcatttacaagac
tgtggagcacactatttcacgtggcactgggatgtcgtgacccaaaagtt
tcacacgctgataaaactgtgcaccgacagctcttgagcaaggagagctg
tctcccgtccctgacttggctgctgtgacttggctgctgtcatttagtca
ggtctttccctcatcactgtgaccacctgctcctaagacgaaattaaagg
aggggttattcatctatttgttgatttgttttgttttgtttttttttttg
tttttcatctatttgttgatttgttttgttttgttttttgtttttcgaga
tggggtttctctgtgtagccctagctgtcctggaactcactctgtagacc
agactggtctcgaactcagaaatctgcctgcctctgcctcccgagtgctg
ggattaagggcgtgtgccaccatgcccggctggatttatttttgagacag
agtttcgtgtaacccaggctgtcctcacactccctttgtagctgaggatg
accttgaactctcgatcccaagggctgggattacaggtgtgcatcaccac
acccagtctgaagagtgctgagactgaacccagagcttcatgtgggtttg
acaatcactctagtgactgccccattcccagctcagagaatttgttctgc
cttatggttggagagggtgtggtctgtcactttagggagaccatgggaga
ggagcactcaaggcagccatgaaagcctcagattctctccatctccgagg
atcaggaaacaaaactaggaccagaggtagggtcagctaataacccgcac
gtttaccctttgaagtggaagtttcttggtagtagccatatatgtagact
acaggatgtttgctgagccaagaccccaggagacatgtgatatttggaaa
gaaatataagactcacaggggccttacatagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124717500_124718691
seq2: B6Ng01-324B09.b_48_1221

seq1  GAATTCCTACGCCTGTAACTCCTTCACAGCGCATCAAGTTCTAGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACGCCTGTAACTCCTTCACAGCGCATCAAGTTCTAGTTAGGA  50

seq1  TCAGGTTCCTTTTATCACATCTAACCTATTATTTTGGACTTTTGCTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTCCTTTTATCACATCTAACCTATTATTTTGGACTTTTGCTAGAT  100

seq1  GTTTTTCATCTGAAGCGTTTCCATGTGCATTTAATAAAAACGTTACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATCTGAAGCGTTTCCATGTGCATTTAATAAAAACGTTACCTAA  150

seq1  ATTAGGGAAAATGTTATCTGAAACTAAAATGCATCTTATAAAACAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAAAATGTTATCTGAAACTAAAATGCATCTTATAAAACAAGCAA  200

seq1  TTCCTTTTAGCCATGAGAGAAATTAATTTCCAAGAAAAAGTTGGCATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTAGCCATGAGAGAAATTAATTTCCAAGAAAAAGTTGGCATTTA  250

seq1  CAGTTGGTTTAAAAAAGAAAAAAACACACACACATTTTGACTGATTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTTTAAAAAAGAAAAAAACACACACACATTTTGACTGATTGTCC  300

seq1  TTGACAAAACCTGTGAATTTGGCGAATTTTATGCACTTGTTTGGAAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAACCTGTGAATTTGGCGAATTTTATGCACTTGTTTGGAAGCTC  350

seq1  CAAAAAAGGGTCAGAAAAGATCAGTTAATTTTCATCGTTGTAGCACTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGGTCAGAAAAGATCAGTTAATTTTCATCGTTGTAGCACTGAT  400

seq1  TATATGTGACTGGAGTCTGTGATGGGTGAAGGAAAGCAGAGTTTGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGACTGGAGTCTGTGATGGGTGAAGGAAAGCAGAGTTTGGCAAG  450

seq1  TCTCACATGGCTGTTCTTACTCGGTGTCTGTGTTACCTTTACATACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATGGCTGTTCTTACTCGGTGTCTGTGTTACCTTTACATACTGCA  500

seq1  GGGAAGCTCACAGCATTTCAGAATAGAAGAAGCCCTTGTGCAATATAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCTCACAGCATTTCAGAATAGAAGAAGCCCTTGTGCAATATAAAC  550

seq1  ACGCATTACAGATTTGAAACTTCACTGAGTCTGTGCTCTTGTGGTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTACAGATTTGAAACTTCACTGAGTCTGTGCTCTTGTGGTTTTTG  600

seq1  GTGTGGTTTGAGCTTTTTAGTTTACTTTGGCTCAGTATTTTTCTTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTGAGCTTTTTAGTTTACTTTGGCTCAGTATTTTTCTTTCCTG  650

seq1  AGTCTTACCTGCACTTCTCCTTTGTCTTTAGAACGCAAAAGTCCACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACCTGCACTTCTCCTTTGTCTTTAGAACGCAAAAGTCCACATTC  700

seq1  TTGATACTGAAAGCTTTGAAAGTACATTTGGCCCAAAGTCACAGAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTGAAAGCTTTGAAAGTACATTTGGCCCAAAGTCACAGAGAAAG  750

seq1  CGGCCAAACTTGTTTGCAAGTGATATGCAATCCCTTCTAGAAAACGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAAACTTGTTTGCAAGTGATATGCAATCCCTTCTAGAAAACGCTGA  800

seq1  AATGTCTACTGAGAGCTATGACCAGGGCAAGGACCGTGATTTGGTGAT-G  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTCTACTGAGAGCTATGACCAGGGCAAGGACCGTGATTTGGTGATGG  850

seq1  GAGGACACTGGTGT-AAGGTACGCATTTGAGGTCTCATCTTTGCTACTGT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGGACACTGGTGTAAAGGTACGCATTTGAGGTCTCATCTTTGCTACTGT  900

seq1  GCTACAGAATGTTTCCCTTATGCTGTGGGGACAGGGATTGCACACACAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAATGTTTCCCTTATGCTGTGGGGACAGGGATTGCACACACAGC  950

seq1  TAGTTTCTTCTTCCCTCAGACTAGAGGCATCAATGCACTAGAGGCCAGAC  998
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TAGTTTCTTC-TCCCTCAGACTAGAGGCATCAATGCACTAGA-GCCAGAC  998

seq1  CAAAAATACTTTTGCAAGGCTTCATCACCACATACCCCTCTTGGTTACCA  1048
      ||||||||||||||||||||||||||| |||||||||||||  | |||||
seq2  CAAAAATACTTTTGCAAGGCTTCATCA-CACATACCCCTCT--GATACCA  1045

seq1  AGAAAAAGGAATTATGTTTTCTTCCTTGCAGTGGTGTGCATTGTTATTCC  1098
      || |||    ||||||||||||    |||||||||||||||   |||| |
seq2  AGGAAA---GATTATGTTTTCT---CTGCAGTGGTGTGCAT--GTATT-C  1086

seq1  TAAATTTCAGAGGGTAGTTATGTTGGAAATTGACACTTTGTCTTCCTGGG  1148
      ||||||  |   |||||| ||||||||||||||||||||| ||||   | 
seq2  TAAATTCGA---GGTAGTAATGTTGGAAATTGACACTTTGGCTTC--TGA  1131

seq1  TCTCTAGACCACTGCAGTTTATAGTTGATCTTTTTC--TGACCCTC  1192
      |||||||| ||||||||  ||||| |||||||||||   |||||||
seq2  TCTCTAGAACACTGCAG--TATAG-TGATCTTTTTCCTGGACCCTC  1174

seq1: chr4_124829509_124830645
seq2: B6Ng01-324B09.g_68_1200 (reverse)

seq1  AGCTATGTAAGCACCTTGTTGAGTCTTTATA-TTCTTTCCAAATATCACA  49
      |||||||||||  || || |||||| ||||| ||||||||||||||||||
seq2  AGCTATGTAAGGCCCCTG-TGAGTC-TTATATTTCTTTCCAAATATCACA  48

seq1  TGTCCTCCCGTGGGTCTTGCTTCAGCAAAACATCCTGTAAGTCTACATAA  99
      ||| |||| | ||||||||  ||||| ||||||||||| ||||||||| |
seq2  TGT-CTCCTG-GGGTCTTGGCTCAGC-AAACATCCTGT-AGTCTACAT-A  93

seq1  TAT-GCTACTACC-AGAAACTTCCACTTCAAGGGGTAAACGTGCGGGTTA  147
      ||| ||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TATGGCTACTACCAAGAAACTTCCACTTCAAAGGGTAAACGTGCGGGTTA  143

seq1  -TAGCTGACCCTACCTCTGGTCCTAGTTTTGTTTCCTGATTCTCGGAGAT  196
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAGCTGACCCTACCTCTGGTCCTAGTTTTGTTTCCTGATCCTCGGAGAT  193

seq1  GGAGAGAATCTGAGGCTTTCATGGCTGCCTTGAGTGGCTCCTCTCCCATG  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAGAGAATCTGAGGCTTTCATGGCTGCCTTGAGT-GCTCCTCTCCCATG  242

seq1  GTCTCCCTAAAGTGACAGACCACACCCTCTCCAACCATAAGGCAGAACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTAAAGTGACAGACCACACCCTCTCCAACCATAAGGCAGAACAA  292

seq1  ATTCTCTGAGCTGGGAATGGGGCAGTCACTAGAGTGATTGTCAAACCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGAGCTGGGAATGGGGCAGTCACTAGAGTGATTGTCAAACCCAC  342

seq1  ATGAAGCTCTGGGTTCAGTCTCAGCACTCTTCAGACTGGGTGTGGTGATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTCTGGGTTCAGTCTCAGCACTCTTCAGACTGGGTGTGGTGATG  392

seq1  CACACCTGTAATCCCAGCCCTTGGGATCGAGAGTTCAAGGTCATCCTCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGTAATCCCAGCCCTTGGGATCGAGAGTTCAAGGTCATCCTCAG  442

seq1  CTACAAAGGGAGTGTGAGGACAGCCTGGGTTACACGAAACTCTGTCTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGGGAGTGTGAGGACAGCCTGGGTTACACGAAACTCTGTCTCAA  492

seq1  AAATAAATCCAGCCGGGCATGGTGGCACACGCCCTTAATCCCAGCACTCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCCAGCCGGGCATGGTGGCACACGCCCTTAATCCCAGCACTCG  542

seq1  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGTCTGGTCTACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGTCTGGTCTACAG  592

seq1  AGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCCATCTCGAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCCATCTCGAAAA  642

seq1  ACAAAAAACAAAACAAAACAAATCAACAAATAGATGAAAAACAAAAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAACAAAACAAATCAACAAATAGATGAAAAACAAAAAAAA  692

seq1  AAACAAAACAAAACAAATCAACAAATAGATGAATAACCCCTCCTTTAATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAATCAACAAATAGATGAATAACCCCTCCTTTAATT  742

seq1  TCGTCTTAGGAGCAGGTGGTCACAGTGATGAGGGAAAGACCTGACTAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTAGGAGCAGGTGGTCACAGTGATGAGGGAAAGACCTGACTAAAT  792

seq1  GACAGCAGCCAAGTCACAGCAGCCAAGTCAGGGACGGGAGACAGCTCTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCCAAGTCACAGCAGCCAAGTCAGGGACGGGAGACAGCTCTCC  842

seq1  TTGCTCAAGAGCTGTCGGTGCACAGTTTTATCAGCGTGTGAAACTTTTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAGAGCTGTCGGTGCACAGTTTTATCAGCGTGTGAAACTTTTGG  892

seq1  GTCACGACATCCCAGTGCCACGTGAAATAGTGTGCTCCACAGTCTTGTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGACATCCCAGTGCCACGTGAAATAGTGTGCTCCACAGTCTTGTAA  942

seq1  ATGCAGTGTGCCCACGCCAAGGCCTCGCTGTGAACACTAGCCTCTCTCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGTGCCCACGCCAAGGCCTCGCTGTGAACACTAGCCTCTCTCCT  992

seq1  TATGGGAGCTGCAGGGGTAGAAACCTGTGAAGTTGCCTTATTTATGAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGCTGCAGGGGTAGAAACCTGTGAAGTTGCCTTATTTATGAAAG  1042

seq1  TGTTAATTTAGCTAGGAGTAGGTAGATGATGTGTGACTTGGTAAATACGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTTAGCTAGGAGTAGGTAGATGATGTGTGACTTGGTAAATACGG  1092

seq1  AGCAGACAATGAAAAGACCTGTTAATTTCGCTCTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAATGAAAAGACCTGTTAATTTCGCTCTTGAATTC  1133