BAC Information

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BAC

Clone NameB6Ng01-324F06
Chromosome4 (Build37)
Map Location 6,860,564 - 6,951,169
singlet/doubletdoublet
Overlap geneTox, LOC100039421
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324F06.bB6Ng01-324F06.g
ACCGA112671GA112672
length1,0591,132
definitionB6Ng01-324F06.b B6Ng01-324F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,860,564 - 6,861,629)(6,950,045 - 6,951,169)
sequence
gaattccttgatgatgtttttctaacagtttttcttagaattatagttat
cccaaatcaagcagttctcttgtgtgttctacattactggaaatgacagt
ctacagtttaaaaagagcctatgtaatttatgttttcagaacgaaggctg
tgaacagtagtgttaagcacggcctctcaactctgcatctgaagcctggg
actaattttaaccattttgggggagaatcagagaatgatgcaactgtggt
atactcaaccacttgaactaactcggaaatctcccactcagtgttcctgg
ctcagtatgtgaagacaaatgcccgagacctctaataaattactgtgtgt
aaaagctacacgtacacaatagaaaatactgtaagtattaatcaaatgat
cacactataataccaataaataatgtatactataattaactctattataa
acaattcctgaataggcatgaggacaagggttattagcatacaaggaaca
ccctgatcctttctcatcctccttcttctggcaaaaggaaaccacttttg
cttgtaggtcagattcaaagcctctgccagtttcccatgtcacaggcctg
ttttcttttaccctgatcatctagcttagagtgtgctgctgactgcttct
gtgatttgaatcccataccttaaaattgtcaggattcaataattaaaggg
gaagaaaagcttagggtttggtattaaaaaacttttactgacataaatat
atggtttcagaaatacatttagcaacacttccaagaacaacaacagaaaa
aaagtagttctgagaatctcttaaaggctggcccattataactttgaaaa
aggaagtttcctcaccacaaaccaaatacatttgctctaaatgtacacag
tctcataaattacacaatgttctctgctgggtgcccctagccaccacacc
tcagacagaaaaagaaagaatgaggcagagtagagatgaaacaggagaag
agaaaaagaaaaagagaaaagagaaagagagagttgggggagatgaggga
agagaggga

gaattcagagatcatgtttcctgccatctttctgttgttctgcaagttcc
tgttctaattaagatgtaagagaaatggattctatttcctgaagggaaaa
acaaaacaaacaaacaaacaaacacacaaaaaacaaagttctgtttcaag
ggatttgtgtaagaaagtgaagcaaaaattgagctacttaaaaactactt
acttaacatagttactttaaataaagatgtatgctttttcttcttaattc
tgccttaacaaaatttcattaacatttgtgcatgtgaccttaataaaaga
tattaattgtgctataaatgttcgcctgcctgcagatttcctgaacaaat
tactgtatgtaactagaatccttccaggtcgctacacagagcttctcctg
ctgtctatagctctgtagacttaataaaccaatgtgccatagcttattta
catttttttcttatgggtgagaatacacttgattctttctcccactgcca
ttgccagcttgcaagcttgtcttgtgcagtcataatcagatgttacattt
gtttccttgaagaaaagtgtttcaaagggtgcacaggtttttcatttcaa
tgatacagtttactttctaggtgggagctaattgtagtaatatatttgcc
acaaaaaatagttctaattgatggtacaataaccctagagcccagtggct
cagcacacaggacattgaatgcaggctaggtaattgtagctagccttgct
ccactcaagaactgtacaaagcctatttcagacaccatgttttccccaca
tcttgggagtggcctctggttctcttctctaaatctcttgcattggataa
gtggccaagaaatgagagagatgtggaattcaaaataaaatggaagttat
ttttaagggccaaactttgaaatggcttattgttttctaccgctattctt
ctgcccaaactgaaggaagcctcaatattactttaggacagatagaaaac
agttttctttgtgtgttcaagtagaggaaacaatctggtcaagatctgcc
ttcggatgaatggatggtttttctgcatgtatgccttcattatccttggt
atagactggaaatccggaattactctacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6860564_6861629
seq2: B6Ng01-324F06.b_49_1107

seq1  GAATTCCTTGATGATGTTTTTCTAACAGTTTTTCTTAGAATTATAGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATGATGTTTTTCTAACAGTTTTTCTTAGAATTATAGTTAT  50

seq1  CCCAAATCAAGCAGTTCTCTTGTGTGTTCTACATTACTGGAAATGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCAAGCAGTTCTCTTGTGTGTTCTACATTACTGGAAATGACAGT  100

seq1  CTACAGTTTAAAAAGAGCCTATGTAATTTATGTTTTCAGAACGAAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTTAAAAAGAGCCTATGTAATTTATGTTTTCAGAACGAAGGCTG  150

seq1  TGAACAGTAGTGTTAAGCACGGCCTCTCAACTCTGCATCTGAAGCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTAGTGTTAAGCACGGCCTCTCAACTCTGCATCTGAAGCCTGGG  200

seq1  ACTAATTTTAACCATTTTGGGGGAGAATCAGAGAATGATGCAACTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTAACCATTTTGGGGGAGAATCAGAGAATGATGCAACTGTGGT  250

seq1  ATACTCAACCACTTGAACTAACTCGGAAATCTCCCACTCAGTGTTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAACCACTTGAACTAACTCGGAAATCTCCCACTCAGTGTTCCTGG  300

seq1  CTCAGTATGTGAAGACAAATGCCCGAGACCTCTAATAAATTACTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATGTGAAGACAAATGCCCGAGACCTCTAATAAATTACTGTGTGT  350

seq1  AAAAGCTACACGTACACAATAGAAAATACTGTAAGTATTAATCAAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTACACGTACACAATAGAAAATACTGTAAGTATTAATCAAATGAT  400

seq1  CACACTATAATACCAATAAATAATGTATACTATAATTAACTCTATTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATAATACCAATAAATAATGTATACTATAATTAACTCTATTATAA  450

seq1  ACAATTCCTGAATAGGCATGAGGACAAGGGTTATTAGCATACAAGGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTGAATAGGCATGAGGACAAGGGTTATTAGCATACAAGGAACA  500

seq1  CCCTGATCCTTTCTCATCCTCCTTCTTCTGGCAAAAGGAAACCACTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATCCTTTCTCATCCTCCTTCTTCTGGCAAAAGGAAACCACTTTTG  550

seq1  CTTGTAGGTCAGATTCAAAGCCTCTGCCAGTTTCCCATGTCACAGGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGTCAGATTCAAAGCCTCTGCCAGTTTCCCATGTCACAGGCCTG  600

seq1  TTTTCTTTTACCCTGATCATCTAGCTTAGAGTGTGCTGCTGACTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTACCCTGATCATCTAGCTTAGAGTGTGCTGCTGACTGCTTCT  650

seq1  GTGATTTGAATCCCATACCTTAAAATTGTCAGGATTCAATAATTAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGAATCCCATACCTTAAAATTGTCAGGATTCAATAATTAAAGGG  700

seq1  GAAGAAAAGCTTAGGGTTTGGTATTAAAAAACTTTTACTGACATAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGCTTAGGGTTTGGTATTAAAAAACTTTTACTGACATAAATAT  750

seq1  ATGGTTTCAGAAATACATTTAGCAACACTTCCAAGAACAACAACAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCAGAAATACATTTAGCAACACTTCCAAGAACAACAACAGAAAA  800

seq1  AAAGTAGTTCTGAGAATCTCTTAAAGGCTGGCCCATTATAACTTTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTTCTGAGAATCTCTTAAAGGCTGGCCCATTATAACTTTGAAAA  850

seq1  AGGAAGTTTCCTCACCACAAACCAAATACA-TTGCTCTAAATGTACACAG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGAAGTTTCCTCACCACAAACCAAATACATTTGCTCTAAATGTACACAG  900

seq1  TCTCATAAATTACACAAATGTTCTCTGCTGGGTGCCCCTAGCCACCACAC  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCATAAATTACAC-AATGTTCTCTGCTGGGTGCCCCTAGCCACCACAC  949

seq1  CTCAGACAGAAAAAGAAAGAATGAGGCAGAAGTAGAGAATGAAACAAGGA  999
      ||||||||||||||||||||||||||||| ||||||| ||||||| ||||
seq2  CTCAGACAGAAAAAGAAAGAATGAGGCAG-AGTAGAG-ATGAAAC-AGGA  996

seq1  AGAAAGAGAAAAAGAAAAAAGAGAAAAAGGAAGAAAGAGAGGAGTT-GGG  1048
         ||||||||||| ||||||||||||    ||||||||| ||||| |||
seq2  --GAAGAGAAAAAG-AAAAAGAGAAAA---GAGAAAGAGA-GAGTTGGGG  1039

seq1  GAGATGAGG--AGAGAGGGA  1066
      |||||||||  |||||||||
seq2  GAGATGAGGGAAGAGAGGGA  1059


seq1: chr4_6950045_6951169
seq2: B6Ng01-324F06.g_68_1199 (reverse)

seq1  CCTTGTAGAGTTATTCAGGATTTTCAAGTC-ATAACAAAGATAATAGAAG  49
      ||||||||||| |||| ||| |||| |||| ||| ||| |||||| ||||
seq2  CCTTGTAGAGTAATTCCGGA-TTTCCAGTCTATACCAAGGATAAT-GAAG  48

seq1  CATTACATGCAGAAAA--CATACAATCATCAGAA-GCAGATCTTGACCAG  96
         |||||||||||||  ||| || ||||| ||| |||||||||||||||
seq2  GCATACATGCAGAAAAACCATCCATTCATCCGAAGGCAGATCTTGACCAG  98

seq1  AT--GTTCCTCTACTTGAACACACAAAG-AAACTGTTTTCTATCTGTCTT  143
      ||   ||||||||||||||||||||||| ||||||||||||||||||| |
seq2  ATTGTTTCCTCTACTTGAACACACAAAGAAAACTGTTTTCTATCTGTCCT  148

seq1  AAAGTAATATTGAGGCTT-CTTCAGTTTGGGCAGAGGAATAGCGGTAGAA  192
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AAAGTAATATTGAGGCTTCCTTCAGTTTGGGCAGAAGAATAGCGGTAGAA  198

seq1  AACAATAAGCCATTTCAAAGTTTGG-CCTTAAAAATAACTTCCATTTTAT  241
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACAATAAGCCATTTCAAAGTTTGGCCCTTAAAAATAACTTCCATTTTAT  248

seq1  TTTGAATTCCACATCTCTCTCATTTCTTGGCCACTTATCCAATGCAAGAG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTCCACATCTCTCTCATTTCTTGGCCACTTATCCAATGCAAGAG  298

seq1  ATTTAGAGAAGAGAACCAGAGGCCACTCCCAAGATGTGGGGAAAACATGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGAAGAGAACCAGAGGCCACTCCCAAGATGTGGGGAAAACATGG  348

seq1  TGTCTGAAATAGGCTTTGTACAGTTCTTGAGTGGAGCAAGGCTAGCTACA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAATAGGCTTTGTACAGTTCTTGAGTGGAGCAAGGCTAGCTACA  398

seq1  ATTACCTAGCCTGCATTCAATGTCCTGTGTGCTGAGCCACTGGGCTCTAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTAGCCTGCATTCAATGTCCTGTGTGCTGAGCCACTGGGCTCTAG  448

seq1  GGTTATTGTACCATCAATTAGAACTATTTTTTGTGGCAAATATATTACTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTACCATCAATTAGAACTATTTTTTGTGGCAAATATATTACTA  498

seq1  CAATTAGCTCCCACCTAGAAAGTAAACTGTATCATTGAAATGAAAAACCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCTCCCACCTAGAAAGTAAACTGTATCATTGAAATGAAAAACCT  548

seq1  GTGCACCCTTTGAAACACTTTTCTTCAAGGAAACAAATGTAACATCTGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCTTTGAAACACTTTTCTTCAAGGAAACAAATGTAACATCTGAT  598

seq1  TATGACTGCACAAGACAAGCTTGCAAGCTGGCAATGGCAGTGGGAGAAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGCACAAGACAAGCTTGCAAGCTGGCAATGGCAGTGGGAGAAAG  648

seq1  AATCAAGTGTATTCTCACCCATAAGAAAAAAATGTAAATAAGCTATGGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGTATTCTCACCCATAAGAAAAAAATGTAAATAAGCTATGGCA  698

seq1  CATTGGTTTATTAAGTCTACAGAGCTATAGACAGCAGGAGAAGCTCTGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTATTAAGTCTACAGAGCTATAGACAGCAGGAGAAGCTCTGTG  748

seq1  TAGCGACCTGGAAGGATTCTAGTTACATACAGTAATTTGTTCAGGAAATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGACCTGGAAGGATTCTAGTTACATACAGTAATTTGTTCAGGAAATC  798

seq1  TGCAGGCAGGCGAACATTTATAGCACAATTAATATCTTTTATTAAGGTCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGGCGAACATTTATAGCACAATTAATATCTTTTATTAAGGTCA  848

seq1  CATGCACAAATGTTAATGAAATTTTGTTAAGGCAGAATTAAGAAGAAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAATGTTAATGAAATTTTGTTAAGGCAGAATTAAGAAGAAAAA  898

seq1  GCATACATCTTTATTTAAAGTAACTATGTTAAGTAAGTAGTTTTTAAGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATCTTTATTTAAAGTAACTATGTTAAGTAAGTAGTTTTTAAGTA  948

seq1  GCTCAATTTTTGCTTCACTTTCTTACACAAATCCCTTGAAACAGAACTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTTTTGCTTCACTTTCTTACACAAATCCCTTGAAACAGAACTTT  998

seq1  GTTTTTTGTGTGTTTGTTTGTTTGTTTGTTTTGTTTTTCCCTTCAGGAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTGTGTTTGTTTGTTTGTTTGTTTTGTTTTTCCCTTCAGGAAA  1048

seq1  TAGAATCCATTTCTCTTACATCTTAATTAGAACAGGAACTTGCAGAACAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCATTTCTCTTACATCTTAATTAGAACAGGAACTTGCAGAACAA  1098

seq1  CAGAAAGATGGCAGGAAACATGATCTCTGAATTC  1125
      ||||||||||||||||||||||||||||||||||
seq2  CAGAAAGATGGCAGGAAACATGATCTCTGAATTC  1132


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