BAC Information

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BAC

Clone NameB6Ng01-324J05
Chromosome4 (Build37)
Map Location 30,817,241 - 30,846,821
singlet/doubletdoublet
Overlap geneLOC100040864
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324J05.bB6Ng01-324J05.g
ACCGA112853GA112854
length1,1481,139
definitionB6Ng01-324J05.b B6Ng01-324J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,845,663 - 30,846,821)(30,817,241 - 30,818,211)
sequence
gaattccttaaattgttttaaatcttaactacaatgaagctcttctgtac
agtgagtctgatgtgatgtgtaacaagtataaatatttagcttatggatt
caccttgactcatcattctggaatgctttggagtaggagctctcaaccat
cctaaagctgtagccctttaatccagttccttatgctgtggtgagcttca
taagtgtaacttattttgttgtcacttcataagtgtaactttgctactca
taatataaatatttgatatgcagggtattgaaaattaacccatatgaaag
ggtaattctaccaccaaagcttcagcccacaggttaagaaccactgcttt
ggaatattgcccaataaattaggacattattaaatatcaaataaaacata
cagccatggacaaacagacacaccaacaggaataagaagacagatagaca
ggcagaaatagaagaaagccctacctggggatcctggggcacattctcct
ggtgtgtctctgaacgctccagttcctccaatccttaattcttccctttc
ttcctcaggactccccaagtttcacctaaggcttgaccattgtgctctgc
acctgctcccatcagttgctgaataaagtctctctgatgtctttgatgat
gattctgctaggctatggtcacagaatactctgcaggcaggacaatctgt
atgtctaaggttttgtggttgggttggtgtcccaatctctctgcctggtt
aacaaagatggccagttaagtccctgtgtccctcattactaggaatcttt
gttagggttactctcatagattctgtggaacttcttaaatttgtttttat
tgctaggtataactaaagtttctttacctacataaaaatcactaaaaggt
cacagagattttaactgaaatgtatactaaatgtttttaagaataaatta
tatgatttgtagcctggatttgagcacatcagtccacttgtgatttggct
tgacatcttagaagtgggcactatacatttaagagctaagagaacttgga
gtatttcagctggtcttgctttctcttacccccgagaatagaaatgaatg
cttgatagtcaacacattccatcgaattatcgacttgcctctgatgta

gaattcagagactgaggcaacatgtacagagttttatagcaggtagggtc
ttaattttgaaagaagtagacacatgcccccatccataactcaaagaaat
ctccagcaacaaccacttgcaaataaaagttttgtttcccccaaggagtc
ttactggggtaatactttacttttaatggtaagctgaatgcccagcagta
gattgtcaccagaaaatgagctactcaacagcagctttgaaggttccttg
tcttgtaaaaccatattaaggctccctccttttaatcatacctcattatt
ttaaattttattatatatttttcttctctatttttacttttcaggtctgt
gttgtaggtgatacagcttctagtttagtgtttttatgagattcttgagt
ttgcaaaagaatgggtctctgtctttgggccatctcctggctctttgtgt
ttggtttggttttgctttgtttgtgttgtcctattccaatgggttagttt
cattttatattatatgttatttctttaatgttgcttaagatgcctatttc
ttttttaatgatgaatagaaagcatagatcatgatgtgaagaaatgtgga
gagcaactgggagatgtagcaagatgaaagaagaaaaatgtaaacagaaa
aattatgtgagaagagtacactttaaatcaaaggggggaataaaaataaa
aaagagtagcaaaataaataaatagcttcttatatcttagtaaccactct
atagggcaataatttaaattccaacactattagagatgagccattatttt
tgattatacttcaagagttttattttttgaaacttctactctgtaagcat
actacctcatcatttactacagaatatgcatcagttcaaacattactgat
aggctttttacttttcctcaattccttaccttctttctttaaaaaattat
taattttatttttatttacgtgagtgcactctaagtgtcattagacagac
caaagaggacatcagagcacattacagatggtgtgaccaccatgtggtgc
tgggatgactcagactctggaagaagcagtcagtgctctaaacactgagc
atctcctccagcacttcctacttcttttttttccttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30845663_30846821
seq2: B6Ng01-324J05.b_43_1190 (reverse)

seq1  TACATTCAGAGGCAAGTCTGAATAAATCTGATGGAAATGTGTTGGAACTA  50
      |||| |||||||||||||   |||| || ||||| |||||||||  ||||
seq2  TACA-TCAGAGGCAAGTC--GATAATTC-GATGG-AATGTGTTG--ACTA  43

seq1  TCAGGCATTTCATTCTAATCTCCGGGGGTAAGAGAAAGCAAGAACAGCTG  100
      ||| |||||   ||||| ||| ||||||||||||||||||||| ||||||
seq2  TCAAGCATTCATTTCTATTCT-CGGGGGTAAGAGAAAGCAAGACCAGCTG  92

seq1  AAATACTTCAAGTTCTCTTAGCTCCTTAAATGTATAGTTGCCCACTTCTA  150
      ||||||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  AAATACTCCAAGTTCTCTTAGCT-CTTAAATGTATAG-TGCCCACTTCTA  140

seq1  AGATGTTCAAGCCAAATCACAAGTGGACTGATGTGCTCAAATCCAGGCTA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATG-TCAAGCCAAATCACAAGTGGACTGATGTGCTCAAATCCAGGCTA  189

seq1  CAAATCATATAATTTATTCTTAAAAACATTTAGTATACATTTCAGTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATATAATTTATTCTTAAAAACATTTAGTATACATTTCAGTTAAA  239

seq1  ATCTCTGTGACCTTTTAGTGATTTTTATGTAGGTAAAGAAACCTTAGTTA  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCTCTGTGACCTTTTAGTGATTTTTATGTAGGTAAAGAAACTTTAGTTA  289

seq1  TACCTAGCAATAAAAACAAATTTAAGAAGTTCCACAGAATCTATGAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGCAATAAAAACAAATTTAAGAAGTTCCACAGAATCTATGAGAGT  339

seq1  AACCCTAACAAAGATTCCTAGTAATGAGGGACACAGGGACTTAACTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAACAAAGATTCCTAGTAATGAGGGACACAGGGACTTAACTGGCC  389

seq1  ATCTTTGTTAACCAGGCAGAGAGATTGGGACACCAACCCAACCACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTAACCAGGCAGAGAGATTGGGACACCAACCCAACCACAAAAC  439

seq1  CTTAGACATACAGATTGTCCTGCCTGCAGAGTATTCTGTGACCATAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACATACAGATTGTCCTGCCTGCAGAGTATTCTGTGACCATAGCCT  489

seq1  AGCAGAATCATCATCAAAGACATCAGAGAGACTTTATTCAGCAACTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATCATCATCAAAGACATCAGAGAGACTTTATTCAGCAACTGATG  539

seq1  GGAGCAGGTGCAGAGCACAATGGTCAAGCCTTAGGTGAAACTTGGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGTGCAGAGCACAATGGTCAAGCCTTAGGTGAAACTTGGGGAGT  589

seq1  CCTGAGGAAGAAAGGGAAGAATTAAGGATTGGAGGAACTGGAGCGTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAAGAAAGGGAAGAATTAAGGATTGGAGGAACTGGAGCGTTCAG  639

seq1  AGACACACCAGGAGAATGTGCCCCAGGATCCCCAGGTAGGGCTTTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCAGGAGAATGTGCCCCAGGATCCCCAGGTAGGGCTTTCTTCT  689

seq1  ATTTCTGCCTGTCTATCTGTCTTCTTATTCCTGTTGGTGTGTCTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCCTGTCTATCTGTCTTCTTATTCCTGTTGGTGTGTCTGTTTGT  739

seq1  CCATGGCTGTATGTTTTATTTGATATTTAATAATGTCCTAATTTATTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTGTATGTTTTATTTGATATTTAATAATGTCCTAATTTATTGGG  789

seq1  CAATATTCCAAAGCAGTGGTTCTTAACCTGTGGGCTGAAGCTTTGGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCCAAAGCAGTGGTTCTTAACCTGTGGGCTGAAGCTTTGGTGGT  839

seq1  AGAATTACCCTTTCATATGGGTTAATTTTCAATACCCTGCATATCAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACCCTTTCATATGGGTTAATTTTCAATACCCTGCATATCAAATA  889

seq1  TTTATATTATGAGTAGCAAAGTTACACTTATGAAGTGACAACAAAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATGAGTAGCAAAGTTACACTTATGAAGTGACAACAAAATAAG  939

seq1  TTACACTTATGAAGCTCACCACAGCATAAGGAACTGGATTAAAGGGCTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTATGAAGCTCACCACAGCATAAGGAACTGGATTAAAGGGCTAC  989

seq1  AGCTTTAGGATGGTTGAGAGCTCCTACTCCAAAGCATTCCAGAATGATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGGATGGTTGAGAGCTCCTACTCCAAAGCATTCCAGAATGATGA  1039

seq1  GTCAAGGTGAATCCATAAGCTAAATATTTATACTTGTTACACATCACATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGTGAATCCATAAGCTAAATATTTATACTTGTTACACATCACATC  1089

seq1  AGACTCACTGTACAGAAGAGCTTCATTGTAGTTAAGATTTAAAACAATTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACTGTACAGAAGAGCTTCATTGTAGTTAAGATTTAAAACAATTT  1139

seq1  AAGGAATTC  1159
      |||||||||
seq2  AAGGAATTC  1148


seq1: chr4_30817241_30818211
seq2: B6Ng01-324J05.g_250_1204

seq1  TGAATGCCCAGCAGTAGATTGTCACCAGAAAATGAGCTACTCAACAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCCAGCAGTAGATTGTCACCAGAAAATGAGCTACTCAACAGCAG  50

seq1  CTTTGAAGGTTCCTTGTCTTGTAAAACCATATTAAGGCTCCCTCCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGGTTCCTTGTCTTGTAAAACCATATTAAGGCTCCCTCCTTTTA  100

seq1  ATCATACCTCATTATTTTAAATTTTATTATATATTTTTCTTCTCTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACCTCATTATTTTAAATTTTATTATATATTTTTCTTCTCTATTTT  150

seq1  TACTTTTCAGGTCTGTGTTGTAGGTGATACAGCTTCTAGTTTAGTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAGGTCTGTGTTGTAGGTGATACAGCTTCTAGTTTAGTGTTTT  200

seq1  TATGAGATTCTTGAGTTTGCAAAAGAATGGGTCTCTGTCTTTGGGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTCTTGAGTTTGCAAAAGAATGGGTCTCTGTCTTTGGGCCATC  250

seq1  TCCTGGCTCTTTGTGTTTGGTTTGGTTTTGCTTTGTTTGTGTTGTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTCTTTGTGTTTGGTTTGGTTTTGCTTTGTTTGTGTTGTCCTAT  300

seq1  TCCAATGGGTTAGTTTCATTTTATATTATATGTTATTTCTTTAATGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGGGTTAGTTTCATTTTATATTATATGTTATTTCTTTAATGTTGC  350

seq1  TTAAGATGCCTATTTCTTTTTTAATGATGAATAGAAAGCATAGATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGCCTATTTCTTTTTTAATGATGAATAGAAAGCATAGATCATGA  400

seq1  TGTGAAGAAATGTGGAGAGCAACTGGGAGATGTAGCAAGATGAAAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAAATGTGGAGAGCAACTGGGAGATGTAGCAAGATGAAAGAAGA  450

seq1  AAAATGTAAACAGAAAAATTATGTGAGAAGAGTACACTTTAAATCAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAACAGAAAAATTATGTGAGAAGAGTACACTTTAAATCAAAGG  500

seq1  GGGGAATAAAAATAAAAAAGAGTAGCAAAATAAATAAATAGCTTCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATAAAAATAAAAAAGAGTAGCAAAATAAATAAATAGCTTCTTATA  550

seq1  TCTTAGTAACCACTCTATAGGGCAATAATTTAAATTCCAACACTATTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAACCACTCTATAGGGCAATAATTTAAATTCCAACACTATTAGA  600

seq1  GATGAGCCATTATTTTTGATTATACTTCAAGAGTTTTATTTTTTGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCATTATTTTTGATTATACTTCAAGAGTTTTATTTTTTGAAACT  650

seq1  TCTACTCTGTAAGCATACTACCTCATCATTTACTACAGAATATGCATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTGTAAGCATACTACCTCATCATTTACTACAGAATATGCATCAG  700

seq1  TTCAAACATTACTGATAGGCTTTTTACTTTTCCTCAATTCCTTACCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATTACTGATAGGCTTTTTACTTTTCCTCAATTCCTTACCTTCT  750

seq1  TTCTTTTAAAAAAATTATTAA-TTTATTTTTATTTACGTGAGTGCACTCT  799
      ||||||  ||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTTT--AAAAAATTATTAATTTTATTTTTATTTACGTGAGTGCACTCT  798

seq1  AAGTGTCATTAGACAGACCAAAAGAGGACATCAGAGCACATTACAGATGG  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGTGTCATTAGACAGACC-AAAGAGGACATCAGAGCACATTACAGATGG  847

seq1  TTGTGAACCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAG  899
       |||| |||||||||||| ||||||||  || ||||||   |||||||||
seq2  -TGTG-ACCACCATGTGG-TGCTGGGA--TG-ACTCAG--ACTCTGGAAG  889

seq1  -AGCAGTCAGTGCTCTTAAACACTGAGCCATCT-CTCCAGCCAACTTTCT  947
       |||||||||||||| ||||||||||| ||||| |||||||  || ||| 
seq2  AAGCAGTCAGTGCTC-TAAACACTGAG-CATCTCCTCCAGC--AC-TTCC  934

seq1  TACTTTCTTTTTTTTTTCCTTTTT  971
      ||||   | |||||||||||||||
seq2  TACT---TCTTTTTTTTCCTTTTT  955


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