BAC Information

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BAC

Clone NameB6Ng01-325G08
Chromosome4 (Build37)
Map Location 91,879,231 - 91,983,507
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G08.bB6Ng01-325G08.g
ACCGA113465GA113466
length1,1691,148
definitionB6Ng01-325G08.b B6Ng01-325G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,879,231 - 91,880,396)(91,982,349 - 91,983,507)
sequence
gaattcctaaaattatatcagtgattattaagctcttttatagtgggatt
gctattaggtcattttctgatagtcaaaactgcaatgagaattctgccag
tgtttcaagtatcactagttaattgctcttagatagtaaccagactttct
cctactcagaacacattccaagaggttgtaaaacaattaaccaaagatca
taaaaaaggaactaatgatttactgtaggtgctagggcagaagataaaat
attactgggtttatctatacaaaacttaactaataacttagttatggttt
taaaccttcagtcaacctgtggagctgagacacatgattggacgtttagc
caaataattacacctaatggatatgcatgtaaacattctcggttgtaaac
ttctatttcaatttgtgatttgatttttttgtgtgaacttgtggtgaact
ttgtaacatgtgatcatgtattctgaaagatgtataaatactgagaacaa
agagaaggagtagaattttttttttccctttcccctcctggaagaatctt
ttcccgtactagaatttttgcccacttagagaacttttatccttccctgc
ttaggatctttctgcctttccccttagttagctttcataggaaacttttt
acaacctagtaataaatgctctaatcattttttcagtgtccctttttctt
cctgtgacttccaactagcaggctgaaagttagagctgagcagctcctgc
tgagatagtacaaagactatttacttaatcctttgctgtttgaggaagat
gtcctaagtgcatcacagaagacaggtcacctacagtagcatataactta
gactcagataagtaaactctttattattatacagcaacccaaaatatctg
gtaagactaagtcttacccctgaatcttaagacaaagtcttaccctccct
attctcttcctcctctgctacctcaagaaggatccacagaaagaagaaaa
cactggaaacactgctgggattgtgtgaagtaggcagacattataaatgc
aatattgggaagaatatttcgtcatgttttatcatcataatgtaaagaat
gcaaagcataaccacctcagacagtgctgtcgatccaaagttgttcacct
catgactctgtgctcttag

gaattctaacctttcttccttttgaagcactgcatagcccattgtgtttc
atctatttctttatctgtagcttaaaaatgtgattcatgtaagctctaca
taacaatatctttatttactttgttcacaataacatcattacctctttac
tatgactgatagaaacaaaacaaaacaaaacaaacaaacaaacaaaaaac
tgttgtaatcttttttacctcctcttctatgacgtatcctgaaacttcgt
tgtaggatagcgttatacatattctcagcgtgggaactctgttctgtggt
ccatttttctcttcttagtcttcagttactggtctctgtagtagactcaa
tctgctgtaaaaagaaacctgtttaatgaggagtgacaactacaatctta
tgtgtatataggaatatatatttagaactcttttggaaatcatacagttt
taagaaagtgagagttgtaagccttcttctaggagccatacctgactaag
tgtaagtacttgtctaggtttaaagttccagacatgaattttctagtatt
tggtggaccttaagtgcaatttgatggctgttggctacttccaaaaattg
tacccttggatatatctttcaccattcaggaaattgtttagagccatgaa
ttttttaacagacttgcaggtcagattccactcagtttcttccaagtcct
gagtctgacatgtgcattatcttcagcattaaggttttttttttttcaaa
atatcctcaagttctaagagatatccaaataaaatagcaatagaatgttt
gttatagagtatattgtttgtgaaggtgattcttgttttcatgctgtata
atgaaaaaaatatgtgtatatatatgtatatatatatgtatatgtttcat
cttaaggctataaaataaaatgtttctgtatggcctattcaaatagtctt
agttattatctctcattcttttcttctttccttttcgtaacatccctctt
tctacataattataattcaaatctcagtatttttctctgatatcacttgg
tacagtctacaacaacaacacacacacgcaacgaaatcgacacaacacag
agtttctttcatttctgtgcttctatagttacttcagttaagtactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91879231_91880396
seq2: B6Ng01-325G08.b_63_1211

seq1  GTGATTATTAAGCTCTTTTATAGTGGGATTGCTATTAGGTCATTTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATTAAGCTCTTTTATAGTGGGATTGCTATTAGGTCATTTTCTGA  50

seq1  TAGTCAAAACTGCAATGAGAATTCTGCCAGTGTTTCAAGTATCACTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAACTGCAATGAGAATTCTGCCAGTGTTTCAAGTATCACTAGTT  100

seq1  AATTGCTCTTAGATAGTAACCAGACTTTCTCCTACTCAGAACACATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTCTTAGATAGTAACCAGACTTTCTCCTACTCAGAACACATTCCA  150

seq1  AGAGGTTGTAAAACAATTAACCAAAGATCATAAAAAAGGAACTAATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTGTAAAACAATTAACCAAAGATCATAAAAAAGGAACTAATGATT  200

seq1  TACTGTAGGTGCTAGGGCAGAAGATAAAATATTACTGGGTTTATCTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGGTGCTAGGGCAGAAGATAAAATATTACTGGGTTTATCTATAC  250

seq1  AAAACTTAACTAATAACTTAGTTATGGTTTTAAACCTTCAGTCAACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAACTAATAACTTAGTTATGGTTTTAAACCTTCAGTCAACCTGT  300

seq1  GGAGCTGAGACACATGATTGGACGTTTAGCCAAATAATTACACCTAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGACACATGATTGGACGTTTAGCCAAATAATTACACCTAATGG  350

seq1  ATATGCATGTAAACATTCTCGGTTGTAAACTTCTATTTCAATTTGTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGTAAACATTCTCGGTTGTAAACTTCTATTTCAATTTGTGATT  400

seq1  TGATTTTTTTGTGTGAACTTGTGGTGAACTTTGTAACATGTGATCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTGTGTGAACTTGTGGTGAACTTTGTAACATGTGATCATGTA  450

seq1  TTCTGAAAGATGTATAAATACTGAGAACAAAGAGAAGGAGTAGAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGATGTATAAATACTGAGAACAAAGAGAAGGAGTAGAATTTTT  500

seq1  TTTTTCCCTTTCCCCTCCTGGAAGAATCTTTTCCCGTACTAGAATTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTTCCCCTCCTGGAAGAATCTTTTCCCGTACTAGAATTTTTG  550

seq1  CCCACTTAGAGAACTTTTATCCTTCCCTGCTTAGGATCTTTCTGCCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTAGAGAACTTTTATCCTTCCCTGCTTAGGATCTTTCTGCCTTTC  600

seq1  CCCTTAGTTAGCTTTCATAGGAAACTTTTTACAACCTAGTAATAAATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGTTAGCTTTCATAGGAAACTTTTTACAACCTAGTAATAAATGCT  650

seq1  CTAATCATTTTTTCAGTGTCCCTTTTTCTTCCTGTGACTTCCAACTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATTTTTTCAGTGTCCCTTTTTCTTCCTGTGACTTCCAACTAGCA  700

seq1  GGCTGAAAGTTAGAGCTGAGCAGCTCCTGCTGAGATAGTACAAAGACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGTTAGAGCTGAGCAGCTCCTGCTGAGATAGTACAAAGACTAT  750

seq1  TTACTTAATCCTTTGCTGTTTGAGGAAGATGTCCTAAGTGCATCACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAATCCTTTGCTGTTTGAGGAAGATGTCCTAAGTGCATCACAGAA  800

seq1  GACAGGTCACCTACAGTAGCATATAACTTAGACTCAGATAAGTAAACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCACCTACAGTAGCATATAACTTAGACTCAGATAAGTAAACTCT  850

seq1  TTATTATTATACAGCAACCCAAAATATCTGGTAAGACTAAGTCTTACCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATACAGCAACCCAAAATATCTGGTAAGACTAAGTCTTACCCC  900

seq1  TGAATCTTAAGACAAAGTCTTACCCTCCCTATTCTCTTCCTCCTCTGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTAAGACAAAGTCTTACCCTCCCTATTCTCTTCCTCCTCTGCTA  950

seq1  CCTCAAGAAGGATCCACAAGAAAGAAGAAAACACTGGGAAAACACTGCTG  1000
      ||||||||||||||||| |||||||||||||||||||  |||||||||||
seq2  CCTCAAGAAGGATCCAC-AGAAAGAAGAAAACACTGG--AAACACTGCTG  997

seq1  GGAATTGTGTGAAAGTAAGGCAGACATTATAAAATGCAATAATTGGGAAG  1050
      || |||||||| |||| ||||||||||||| ||||||||| |||||||||
seq2  GG-ATTGTGTG-AAGT-AGGCAGACATTAT-AAATGCAAT-ATTGGGAAG  1042

seq1  -ATATTTCGTTCATGTTTTAATCATCATAATGTAAAGAAATGCAAAAGCA  1099
       |||||||| ||||||||| ||||||||||||||||| ||||| ||||||
seq2  AATATTTCG-TCATGTTTT-ATCATCATAATGTAAAG-AATGC-AAAGCA  1088

seq1  TAACCA-CTCAGACAAGTGCTTGTCGAATCCAAAGTTTGTTCACCTCAAT  1148
      |||||| ||||||| ||||| ||||| |||||||| ||||||||||| ||
seq2  TAACCACCTCAGAC-AGTGC-TGTCG-ATCCAAAG-TTGTTCACCTC-AT  1133

seq1  GAACTTCTGTGCTCTTAG  1166
      ||   |||||||||||||
seq2  GA--CTCTGTGCTCTTAG  1149


seq1: chr4_91982349_91983507
seq2: B6Ng01-325G08.g_63_1210 (reverse)

seq1  TGAGTACTTAACCTGAAGTAACTATAGAAGCCACAGAAATAGAAAGAGAC  50
      ||||||||||| |||||||||||||||||| ||||||||| |||||| ||
seq2  TGAGTACTTAA-CTGAAGTAACTATAGAAG-CACAGAAAT-GAAAGAAAC  47

seq1  TCTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTATG  100
      ||||||| ||||| ||  | ||| ||||||||||||| |||   |||| |
seq2  TCTGTGT-TGTGT-CGATTTCGT-TGCGTGTGTGTGT-TGTTGTTGTA-G  92

seq1  ACTGTACACAGGTGATATCAAGGAGAAAATACTGGAGGATTTGAATTATA  150
      ||||||| || |||||||||  || |||||||||   |||||||||||||
seq2  ACTGTAC-CAAGTGATATCAGAGA-AAAATACTG--AGATTTGAATTATA  138

seq1  ATTATGTAGAAAGGAGGGATGTTACGAAAAGGAAAGAAG-AAAGAATGAG  199
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  ATTATGTAGAAA-GAGGGATGTTACGAAAAGGAAAGAAGAAAAGAATGAG  187

seq1  AGATAAT-ACTAAGACTATTTGAATAGGCCATACAGAAACATTTTATTTT  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAACTAAGACTATTTGAATAGGCCATACAGAAACATTTTATTTT  237

seq1  ATAGCCTTAAGATGAAACATATACATATATATATACATATATATACACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTTAAGATGAAACATATACATATATATATACATATATATACACAT  287

seq1  ATTTTTTTCATTATACAGCATGAAAACAAGAATCACCTTCACAAACAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCATTATACAGCATGAAAACAAGAATCACCTTCACAAACAATA  337

seq1  TACTCTATAACAAACATTCTATTGCTATTTTATTTGGATATCTCTTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTATAACAAACATTCTATTGCTATTTTATTTGGATATCTCTTAGAA  387

seq1  CTTGAGGATATTTTGAAAAAAAAAAAACCTTAATGCTGAAGATAATGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGATATTTTGAAAAAAAAAAAACCTTAATGCTGAAGATAATGCAC  437

seq1  ATGTCAGACTCAGGACTTGGAAGAAACTGAGTGGAATCTGACCTGCAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGACTCAGGACTTGGAAGAAACTGAGTGGAATCTGACCTGCAAGT  487

seq1  CTGTTAAAAAATTCATGGCTCTAAACAATTTCCTGAATGGTGAAAGATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAAAATTCATGGCTCTAAACAATTTCCTGAATGGTGAAAGATAT  537

seq1  ATCCAAGGGTACAATTTTTGGAAGTAGCCAACAGCCATCAAATTGCACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGGTACAATTTTTGGAAGTAGCCAACAGCCATCAAATTGCACTT  587

seq1  AAGGTCCACCAAATACTAGAAAATTCATGTCTGGAACTTTAAACCTAGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCACCAAATACTAGAAAATTCATGTCTGGAACTTTAAACCTAGAC  637

seq1  AAGTACTTACACTTAGTCAGGTATGGCTCCTAGAAGAAGGCTTACAACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTACACTTAGTCAGGTATGGCTCCTAGAAGAAGGCTTACAACTC  687

seq1  TCACTTTCTTAAAACTGTATGATTTCCAAAAGAGTTCTAAATATATATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCTTAAAACTGTATGATTTCCAAAAGAGTTCTAAATATATATTC  737

seq1  CTATATACACATAAGATTGTAGTTGTCACTCCTCATTAAACAGGTTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACACATAAGATTGTAGTTGTCACTCCTCATTAAACAGGTTTCTT  787

seq1  TTTACAGCAGATTGAGTCTACTACAGAGACCAGTAACTGAAGACTAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCAGATTGAGTCTACTACAGAGACCAGTAACTGAAGACTAAGAA  837

seq1  GAGAAAAATGGACCACAGAACAGAGTTCCCACGCTGAGAATATGTATAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATGGACCACAGAACAGAGTTCCCACGCTGAGAATATGTATAAC  887

seq1  GCTATCCTACAACGAAGTTTCAGGATACGTCATAGAAGAGGAGGTAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTACAACGAAGTTTCAGGATACGTCATAGAAGAGGAGGTAAAAA  937

seq1  AGATTACAACAGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAACAGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTC  987

seq1  TATCAGTCATAGTAAAGAGGTAATGATGTTATTGTGAACAAAGTAAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTCATAGTAAAGAGGTAATGATGTTATTGTGAACAAAGTAAATAA  1037

seq1  AGATATTGTTATGTAGAGCTTACATGAATCACATTTTTAAGCTACAGATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTGTTATGTAGAGCTTACATGAATCACATTTTTAAGCTACAGATA  1087

seq1  AAGAAATAGATGAAACACAATGGGCTATGCAGTGCTTCAAAAGGAAGAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGATGAAACACAATGGGCTATGCAGTGCTTCAAAAGGAAGAAA  1137

seq1  GGTTAGAATTC  1159
      |||||||||||
seq2  GGTTAGAATTC  1148


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