BAC Information

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BAC

Clone NameB6Ng01-325O21
Chromosome4 (Build37)
Map Location 66,570,698 - 66,700,140
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325O21.bB6Ng01-325O21.g
ACCGA113864GA113865
length8141,159
definitionB6Ng01-325O21.b B6Ng01-325O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,570,698 - 66,571,476)(66,698,982 - 66,700,140)
sequence
gaattcagtctcctgattttatatagctgtcttttaacctagtctagcta
tttattcatgggctaaataataaaaaggaaagagaaatttgaaggacaat
taacattttagactccttttggacttcagtttccagttgtatgaaggagg
aatagtaaagaaactgcaggcatgatcactccattattagatataacatt
gtttggtgtgtgtgaataagaagggggagggatattgagagcatttggaa
gagtccatagctgagaaaaggagaagaaggcatccttaatcatcagggaa
atgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggc
ttagatcaaaaattcagttgacagcagatgctggcaaggatgtggagaaa
gagggacactcctcctttgttggtgggattgcaaacttgtacaaccactc
tggaaatcagtctggcggttcctcagaaaaatggacatagtactactgga
ggatcccacaatacctctcctgggcatatatccagaagttgttccaaccg
gtaagaaggacacatgctccattatgttcatagcagccttatttataata
gccagaagctggaaagaacccagatgcccctcaacagaggaatggataca
gaaaatgtggtacatttacacaatggagtattactcagctattaaaaaga
atgaatttatgaaattcctaggcaaatggatggacctggagggcatcatc
ctgagtgaggtaacccaatcacaaaggaactcacacaatatgtactcact
gataagtggaatta

gaattcaaaatggaggtttatctatgccattagcgtggcttaggaagaaa
tatgaaccacagctcttgtcacaatgtgtagctcagagacactgaaggaa
caaagtagttctggaagtaggatgagtgctgttctactgaaggacaggct
gagaaacacattaactgttccccatgttcatacattttccaaacacaaac
ctactacttctctgtaagagccatgaaatctttccatatagagggaattg
tgaaaatagttttatatttgtcaccaacctataaaatatggaataataat
aagtaaaatagaatagaatattaactgctagagatctactctgtgtatct
tgctattcaagaaacacctctaagttttaacagcactatgaaggaaaaat
caatactaactccattatgcaataaataaataagtaaataaataaataaa
taaataaagttagaaagagctttctcaaggttatctactatttcctaaaa
taaaaaaaattgtttcaatttcttattccacaatattttatgtacttatg
aaaaaaatacctgggcatttcatgacattttaatcattattttaaatata
tttttaagcatggctactaattacagtcataattcatataaaagaggaat
gataattattattaaagaatttactttgaaaaaatgtgttcttgaatttg
aatgcccctgtcccaaagtatccacacactagcaactacagtggagggtg
acagttcagttaaccaaatatgggaagaaatagcattgattaagtagaaa
tctaaggatgtagttaattacatttcttgagacagtttgtgtttcagttc
atcttaatgaaaatctaaatatatcaggccttctgcagagctcagtgaac
ttctgctagtgtcacgggaacatacttaaaaacacatatcacacacacac
acacacacacacacacacgcgcgcgcgcacaaacacacacacacacacag
agtcttctttggcgattgttattattattgtagtactgaataaacagtcc
tgggttcaaacatacatcttcagttccagttttccttggtgaactcacag
tgttcttcttttgaaaatatatattattcaagatcttatgaaacaaacaa
tcccctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66570698_66571476
seq2: B6Ng01-325O21.b_45_823

seq1  GAATTCAGTCTCCTGATTTTATATAGCTGTCTTTTAACCTAGTCTAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCCTGATTTTATATAGCTGTCTTTTAACCTAGTCTAGCTA  50

seq1  TTTATTCATGGGCTAAATAATAAAAAGGAAAGAGAAATTTGAAGGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATGGGCTAAATAATAAAAAGGAAAGAGAAATTTGAAGGACAAT  100

seq1  TAACATTTTAGACTCCTTTTGGACTTCAGTTTCCAGTTGTATGAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTAGACTCCTTTTGGACTTCAGTTTCCAGTTGTATGAAGGAGG  150

seq1  AATAGTAAAGAAACTGCAGGCATGATCACTCCATTATTAGATATAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAAAGAAACTGCAGGCATGATCACTCCATTATTAGATATAACATT  200

seq1  GTTTGGTGTGTGTGAATAAGAAGGGGGAGGGATATTGAGAGCATTTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGTGTGTGAATAAGAAGGGGGAGGGATATTGAGAGCATTTGGAA  250

seq1  GAGTCCATAGCTGAGAAAAGGAGAAGAAGGCATCCTTAATCATCAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATAGCTGAGAAAAGGAGAAGAAGGCATCCTTAATCATCAGGGAA  300

seq1  ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC  350

seq1  TTAGATCAAAAATTCAGTTGACAGCAGATGCTGGCAAGGATGTGGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAAAAATTCAGTTGACAGCAGATGCTGGCAAGGATGTGGAGAAA  400

seq1  GAGGGACACTCCTCCTTTGTTGGTGGGATTGCAAACTTGTACAACCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACACTCCTCCTTTGTTGGTGGGATTGCAAACTTGTACAACCACTC  450

seq1  TGGAAATCAGTCTGGCGGTTCCTCAGAAAAATGGACATAGTACTACTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCAGTCTGGCGGTTCCTCAGAAAAATGGACATAGTACTACTGGA  500

seq1  GGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGTTGTTCCAACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCACAATACCTCTCCTGGGCATATATCCAGAAGTTGTTCCAACCG  550

seq1  GTAAGAAGGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGACACATGCTCCATTATGTTCATAGCAGCCTTATTTATAATA  600

seq1  GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA  650

seq1  GAAAATGTGGTACATTTACACAATGGAGTATTACTCAGCTATTAAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGGTACATTTACACAATGGAGTATTACTCAGCTATTAAAAAGA  700

seq1  ATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATC  750

seq1  CTGAGTGAGGTAACCCAATCACAAAGGAA  779
      |||||||||||||||||||||||||||||
seq2  CTGAGTGAGGTAACCCAATCACAAAGGAA  779


seq1: chr4_66698982_66700140
seq2: B6Ng01-325O21.g_68_1226 (reverse)

seq1  TTCAGGGGATTGTTGTTTTCAACAAGATCTTGAAT-ATATATATACTCAA  49
      ||||||||||||||  |||| | |||||||||||| ||||||||  ||||
seq2  TTCAGGGGATTGTTTGTTTC-ATAAGATCTTGAATAATATATATTTTCAA  49

seq1  AAGAAG-ACACTTGTGAGTTTCACAAGG-AAACTGGGAAACTGAAGATGT  97
      |||||| |||| ||||||||   ||||| |||||||  ||||||||||||
seq2  AAGAAGAACAC-TGTGAGTTCACCAAGGAAAACTGG--AACTGAAGATGT  96

seq1  ATGTTTGGAACCAGGACTGTTTATCAGGTACTACAATAATAAT-ACAATC  146
      ||||||| | ||||||||||||||   |||||||||||||||| ||||||
seq2  ATGTTTGAACCCAGGACTGTTTATTCAGTACTACAATAATAATAACAATC  146

seq1  GCCAAAGAAGACTCTGTGTGTGTGTGTGTGTTTGTGCGCGCGCGCGTGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAAGACTCTGTGTGTGTGTGTGTGTTTGTGCGCGCGCGCGTGTG  196

seq1  TGTGTGTGTGTGTGTGTGTGTGTGATATGTGTTTTTAAGTATGTTTCCGT  246
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGATATGTGTTTTTAAGTATGTTCCCGT  246

seq1  GACACTAGCAGAAGTTCACTGAGCTCTGCAGAAGGCCTGATATATTTAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAGCAGAAGTTCACTGAGCTCTGCAGAAGGCCTGATATATTTAGA  296

seq1  TTTTCATTAAGATGAACTGAAACACAAACTGTCTCAAGAAATGTAATTAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTAAGATGAACTGAAACACAAACTGTCTCAAGAAATGTAATTAA  346

seq1  CTACATCCTTAGATTTCTACTTAATCAATGCTATTTCTTCCCATATTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTTAGATTTCTACTTAATCAATGCTATTTCTTCCCATATTTGG  396

seq1  TTAACTGAACTGTCACCCTCCACTGTAGTTGCTAGTGTGTGGATACTTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAACTGTCACCCTCCACTGTAGTTGCTAGTGTGTGGATACTTTG  446

seq1  GGACAGGGGCATTCAAATTCAAGAACACATTTTTTCAAAGTAAATTCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGGCATTCAAATTCAAGAACACATTTTTTCAAAGTAAATTCTTT  496

seq1  AATAATAATTATCATTCCTCTTTTATATGAATTATGACTGTAATTAGTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATTATCATTCCTCTTTTATATGAATTATGACTGTAATTAGTAG  546

seq1  CCATGCTTAAAAATATATTTAAAATAATGATTAAAATGTCATGAAATGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTAAAAATATATTTAAAATAATGATTAAAATGTCATGAAATGCC  596

seq1  CAGGTATTTTTTTCATAAGTACATAAAATATTGTGGAATAAGAAATTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTTTTTCATAAGTACATAAAATATTGTGGAATAAGAAATTGAA  646

seq1  ACAATTTTTTTTATTTTAGGAAATAGTAGATAACCTTGAGAAAGCTCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTTTTTATTTTAGGAAATAGTAGATAACCTTGAGAAAGCTCTTT  696

seq1  CTAACTTTATTTATTTATTTATTTATTTACTTATTTATTTATTGCATAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTTATTTATTTATTTATTTATTTACTTATTTATTTATTGCATAAT  746

seq1  GGAGTTAGTATTGATTTTTCCTTCATAGTGCTGTTAAAACTTAGAGGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGTATTGATTTTTCCTTCATAGTGCTGTTAAAACTTAGAGGTGT  796

seq1  TTCTTGAATAGCAAGATACACAGAGTAGATCTCTAGCAGTTAATATTCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATAGCAAGATACACAGAGTAGATCTCTAGCAGTTAATATTCTA  846

seq1  TTCTATTTTACTTATTATTATTCCATATTTTATAGGTTGGTGACAAATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTACTTATTATTATTCCATATTTTATAGGTTGGTGACAAATAT  896

seq1  AAAACTATTTTCACAATTCCCTCTATATGGAAAGATTTCATGGCTCTTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATTTTCACAATTCCCTCTATATGGAAAGATTTCATGGCTCTTAC  946

seq1  AGAGAAGTAGTAGGTTTGTGTTTGGAAAATGTATGAACATGGGGAACAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTAGTAGGTTTGTGTTTGGAAAATGTATGAACATGGGGAACAGT  996

seq1  TAATGTGTTTCTCAGCCTGTCCTTCAGTAGAACAGCACTCATCCTACTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTTCTCAGCCTGTCCTTCAGTAGAACAGCACTCATCCTACTTC  1046

seq1  CAGAACTACTTTGTTCCTTCAGTGTCTCTGAGCTACACATTGTGACAAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTACTTTGTTCCTTCAGTGTCTCTGAGCTACACATTGTGACAAGA  1096

seq1  GCTGTGGTTCATATTTCTTCCTAAGCCACGCTAATGGCATAGATAAACCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTCATATTTCTTCCTAAGCCACGCTAATGGCATAGATAAACCT  1146

seq1  CCATTTTGAATTC  1159
      |||||||||||||
seq2  CCATTTTGAATTC  1159


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