BAC Information

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BAC

Clone NameB6Ng01-326A06
Chromosome4 (Build37)4 (Build37)
Map Location 59,894,798 - 59,895,86861,507,359 - 61,507,694
singlet/doubletsingletsinglet
Overlap geneSnx30
Upstream geneAI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik
Downstream geneSlc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A06.bB6Ng01-326A06.g
ACCGA113929GA113930
length1,0681,009
definitionB6Ng01-326A06.b B6Ng01-326A06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,894,798 - 59,895,868)(61,507,359 - 61,507,694)
sequence
gaattcatcctcagctctgtagtgaagtgagggccagcctgagctccgtg
aatccctgtctgaaggagcagagctttctgtgcttagagagtggagacgc
tacactcagagacagcagctctttctccctactaactctcctgtgttcgc
ctttaacatactgtcgcgtaaacttccctgcagggagatgtcaagaaaca
tctattatttcccaagacagaagacctatgacagaacaatataatgattc
ctccagagctaagacagtggaggtgttgggttttatctacagccccccag
ggaaggggttactcacaggagcatgtgtgactgaaacagcctcacagctg
tctcaccccagtgcaggccatgccttccctgtagttgtgccgatgagcct
ccccatcagcttctgtgctgtgtgtaagctcactccaactacaaaggaga
gctacgtacagatgtcaaggaagtagaggaaggaacggatagtgtctcag
gtaagggtctgatgatcttcctcctatgaggagcaacaggcctgatcttg
acaagggtcccttgggtagtcacagctgctagattcaggcactaggctgg
gaagggaagtgttttatagtgtgcactgaggccaagatcttagatgaagc
acttctgtgcagcatttataagacagccctcttggtgatagcatgccctc
atcccaaactagacatgtccccaagaagaagccagtggtgctgggagact
catgggaagtgatgggagcaggaggcttgttcccctgacaggctgtatac
acttttggttgttgctgttttgagatagggtctgtggtggttggaataaa
gaatgcctcccctctccaatgcgttcatacatttgaatgcttagtcatca
gaaaatggcactatttgaaaggattgggaggtgtggccttgttggaggag
ttgtttcatgtgggctttgacatttcaaaagcccataccaggcccagtgt
ctgtcagtatattgtctccaccagtggatcacgatcagggatctgtctgt
ctgtctgtctggtctgtc
gaattcagtactgctcctggtattacactatcactttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcaccaaggaagaaagaagtttc
tgaccataggagaaaccagaatagatacttagaactatagctgagttaca
cccatatacaggaatttacaatggtttaggaagtagatcgggtagagtat
tgaattattcatgagatggttagctagaacggaactccctagttagaacc
atgacttgggtgtgaaagcccttgccctaggagtgaaaatttctcacacc
tggcttctaagactatagctgaccttagatagggctgactctgtctcagt
tattttattgcccagttcctgccagtctttgtgttttcatttctctgttc
tgtgtaagagtcattaagcatctggttacctcatttgtaccttgcaggta
tgtcacccaacttccttattgtcttctgcataaaaagtctgatgctcgat
ttgacaaaataaattcagatccaacacaacctctcctgtgtgcatctgtc
tgtcaattcatccgatgctttgcccacccgagactagagacccattccac
gcagacaaaggggcccagagggactgaggcagcaaacttccaagaacaaa
ttggtgttttctgtatctttatatagataaatattaaagttattggggtt
aatatcatgaccaaaagcaagctgaggaggaaagggtttattttagctta
cagtccattatggggggagctgggggtgcaaggaaggggcgggggtaact
ctatgtgagaactcagacataggaactaaagcagagttcttcggagaatg
ttgcttcctgactcattccctgtggattgtgagcctatcttcttatataa
cttattaccccctgcccagggtggtatttccatgcagagttgggccctcc
tgatcagtgttatagaggcatttttttttcacttaaaagtgcctatttcc
atatactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59894798_59895868
seq2: B6Ng01-326A06.b_52_1119

seq1  GAATTCATCCTCAGCTCTGTAGTGAAGTGAGGGCCAGCCTGAGCTCCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCAGCTCTGTAGTGAAGTGAGGGCCAGCCTGAGCTCCGTG  50

seq1  AATCCCTGTCTGAAGGAGCAGAGCTTTCTGTGCTTAGAGAGTGGAGACGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTCTGAAGGAGCAGAGCTTTCTGTGCTTAGAGAGTGGAGACGC  100

seq1  TACACTCAGAGACAGCAGCTCTTTCTCCCTACTAACTCTCCTGTGTTCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCAGAGACAGCAGCTCTTTCTCCCTACTAACTCTCCTGTGTTCGC  150

seq1  CTTTAACATACTGTCGCGTAAACTTCCCTGCAGGGAGATGTCAAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACATACTGTCGCGTAAACTTCCCTGCAGGGAGATGTCAAGAAACA  200

seq1  TCTATTATTTCCCAAGACAGAAGACCTATGACAGAACAATATAATGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTTCCCAAGACAGAAGACCTATGACAGAACAATATAATGATTC  250

seq1  CTCCAGAGCTAAGACAGTGGAGGTGTTGGGTTTTATCTACAGCCCCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCTAAGACAGTGGAGGTGTTGGGTTTTATCTACAGCCCCCCAG  300

seq1  GGAAGGGGTTACTCACAGGAGCATGTGTGACTGAAACAGCCTCACAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTTACTCACAGGAGCATGTGTGACTGAAACAGCCTCACAGCTG  350

seq1  TCTCACCCCAGTGCAGGCCATGCCTTCCCTGTAGTTGTGCCGATGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCCAGTGCAGGCCATGCCTTCCCTGTAGTTGTGCCGATGAGCCT  400

seq1  CCCCATCAGCTTCTGTGCTGTGTGTAAGCTCACTCCAACTACAAAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCAGCTTCTGTGCTGTGTGTAAGCTCACTCCAACTACAAAGGAGA  450

seq1  GCTACGTACAGATGTCAAGGAAGTAGAGGAAGGAACGGATAGTGTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTACAGATGTCAAGGAAGTAGAGGAAGGAACGGATAGTGTCTCAG  500

seq1  GTAAGGGTCTGATGATCTTCCTCCTATGAGGAGCAACAGGCCTGATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTCTGATGATCTTCCTCCTATGAGGAGCAACAGGCCTGATCTTG  550

seq1  ACAAGGGTCCCTTGGGTAGTCACAGCTGCTAGATTCAGGCACTAGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTCCCTTGGGTAGTCACAGCTGCTAGATTCAGGCACTAGGCTGG  600

seq1  GAAGGGAAGTGTTTTATAGTGTGCACTGAGGCCAAGATCTTAGATGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGTGTTTTATAGTGTGCACTGAGGCCAAGATCTTAGATGAAGC  650

seq1  ACTTCTGTGCAGCATTTATAAGACAGCCCTCTTGGTGATAGCATGCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGCAGCATTTATAAGACAGCCCTCTTGGTGATAGCATGCCCTC  700

seq1  ATCCCAAACTAGACATGTCCCCAAGAAGAAGCCAGTGGTGCTGGGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAACTAGACATGTCCCCAAGAAGAAGCCAGTGGTGCTGGGAGACT  750

seq1  CATGGGAAGTGATGGGAGCAGGAGGCTTGTTCCCCTGACAGGCTGTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAGTGATGGGAGCAGGAGGCTTGTTCCCCTGACAGGCTGTATAC  800

seq1  ACTTTTGGTTGTTGCTGTTTTGAGATAGGGTCTGTGGTGGTTGGAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTTTGGTTGTTGCTGTTTTGAGATAGGGTCTGTGGTGGTTGGAAT-AA  849

seq1  AGAATGCCTCCCCTCTCCAATGCGTTCATACATTTGAATGCTTAGTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCTCCCCTCTCCAATGCGTTCATACATTTGAATGCTTAGTCATC  899

seq1  AGAAAATGGCACTATTTGAAAAGGATTGGGAGGTGTGGCCTTGTTGGAGG  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAATGGCACTATTTG-AAAGGATTGGGAGGTGTGGCCTTGTTGGAGG  948

seq1  AAGTGTTTCATGTGGGCTTTGACATTTCAAAAGCCCATACCAGGCCCAGT  1000
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTCATGTGGGCTTTGACATTTCAAAAGCCCATACCAGGCCCAGT  998

seq1  GTCTGTCAGTATATTTGTCTCCCAACCAGTGGATCACGATCA-GGATCTG  1049
      ||||||||||||| ||||||||  |||||||||||||||||| |||||||
seq2  GTCTGTCAGTATA-TTGTCTCC--ACCAGTGGATCACGATCAGGGATCTG  1045

seq1  TCTGTCTGTCTGTCT-GTCTGTC  1071
      ||||||||||||||| |||||||
seq2  TCTGTCTGTCTGTCTGGTCTGTC  1068

seq1: chr4_61507359_61507694
seq2: B6Ng01-326A06.g_701_1036

seq1  TCCAAGAACAAAGTGGTATTATCTGTATCTTTATATAGATAAATGTTAGA  50
      |||||||||||| |||| || ||||||||||||||||||||||| ||| |
seq2  TCCAAGAACAAATTGGTGTTTTCTGTATCTTTATATAGATAAATATTAAA  50

seq1  GTTATTGTGATTATTAACTGGACCAAAAGCAACCTGAGGAGGAAAGGGTT  100
      ||||||| | ||| || |  |||||||||||| |||||||||||||||||
seq2  GTTATTGGGGTTAATATCATGACCAAAAGCAAGCTGAGGAGGAAAGGGTT  100

seq1  TATTTTAGCTTACAGTCCATTATGAGGGTAGCTGGGAGTG-TGGGGAGGA  149
      |||||||||||||||||||||||| ||| ||||||| |||   || ||| 
seq2  TATTTTAGCTTACAGTCCATTATGGGGGGAGCTGGGGGTGCAAGGAAGGG  150

seq1  TTGGGGCTAACTGTATGTGAGAACTCAGAGGCAGGAACTAAAGCAGAGAC  199
        |||| ||||| ||||||||||||||||   ||||||||||||||||  
seq2  GCGGGGGTAACTCTATGTGAGAACTCAGACATAGGAACTAAAGCAGAGTT  200

seq1  CTTAGGGGAATGCTGCTTCCTGACTCATTCCCTATGGATTGTGATTCTAT  249
      ||| || ||||| |||||||||||||||||||| ||||||||||  ||||
seq2  CTTCGGAGAATGTTGCTTCCTGACTCATTCCCTGTGGATTGTGAGCCTAT  250

seq1  CTTCTTATATAACTTATTACCCCCTGCCCAGGGTGGTATTTCCATACAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTCTTATATAACTTATTACCCCCTGCCCAGGGTGGTATTTCCATGCAGA  300

seq1  GTTGGTCCCTCCTGAATCAGTTTTATAGAGGCATTTT  336
      ||||| |||||||| |||||| |||||||||||||||
seq2  GTTGGGCCCTCCTG-ATCAGTGTTATAGAGGCATTTT  336