BAC Information

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BAC

Clone NameB6Ng01-326D17
Chromosome4 (Build37)
Map Location 66,677,193 - 66,831,797
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326D17.bB6Ng01-326D17.g
ACCGA114092GA114093
length1,1531,112
definitionB6Ng01-326D17.b B6Ng01-326D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,677,193 - 66,678,358)(66,830,672 - 66,831,797)
sequence
gaattcaatactaatgattaatggaaatgtttagttcattcactttactg
gaatatcatttagaatgggcttctagtttccgtctgttttcaattctttc
tcaatgattttatttttagctcaggttggtctcatactacattttcctag
cagtgtttgaactcccttgctttttgctcacaataccgattgaagcctga
aaaataatgcatatatactgtctcccctttctttgttttaaagtatctat
ttctgagactcctggagccttaattcattatctgatcccagacaaagcag
tactattctttcctgttctctcttatcaccatgtcaagtgaaaggttaag
tgcgcagagtgaatctgagataaatttagagatcaagtcaagactttaaa
catagaaaccatctgcccaatacccccatcttaaaagaatcttaggttgg
gagaaaagctttgctagacactatttatcctcaatatacttcatttttca
tatcatttgttgattgatttattttttaatgcctatgtctcagtctctca
ataataaccattagttaacctgctgcatttacaaatttgtatagcttaaa
agacctatgtatttataaaaaatgaataccactaattcccttcatgaagt
cagttacttaggtaattactccacaggaattttttttttttaagtaagga
tgggaagcagaaggaattagcatctgtcccatatttagtgtattaattat
ttttgttgccataataaacatacaaagacaatagaaactattggctaaaa
gtgactatgttagtttatggctccagagggttaaatagtctaaaacagtg
gaagaggaatggctgcaagtaacaagattaggaaaactcagagatcatga
cttcaactacagaaagcagagaatgaactagactggggtgaagacctaaa
atccaaagtctgtttcgagtgatttccatcctccatcaaggcccatcttc
taaaagttcaataatctctgcaaatggcagcacactgcagatgagtgttc
aaatgccttggatgctttcatgcaaacacctcacactttgctaagtcact
accttcggtttcggaacctctttttttcgtaataaaagacagaatgtctc
att

gaattctataagtttcaaccctgcatgcttttctaagcaccccccccccc
cacctacagaagagaaatatacatatgtgtgtaagtgagtccatagagag
caataggaaaaagaaaacctgggaggctgatgaagttgaagtatttgatg
aggttgagtgtactcctgttccttacttcttagatatctcataacgtagt
gaaatggagagaaacagcacggattaattgacacccacctgttacagtta
ttgggcttctctctaccttcattgtctctgaattacggacatgagtaagt
tgtacaaatgattattacctaaacatatacacaatattcattggagatgt
gaattactaacttattggtattcctgtgacacccagactgagtttgttac
acagcatctttctaatactgattgttattgcctgctactaattttctgga
acctcttgcctgtttctaactaattttcttggttctttgtgttagtactt
ataaatgtgagctaaacaagaatgataagcgacatgccagcacacaagat
tcccaacattcccaaataaaggcaactgaggagagctgggaatggggaag
gtcactgtccccaagaatgagcccatcagctggtggggcagcactctata
gtcagctctgaggatacacacggagggagtactgtacagacttagtaggt
aatatagacatatttatatatacaaatacatatatgcatgcaaaaacaat
gtcatgaatttgaagaattgtagaagagttttatgggaggctttagagaa
aggaatgggaaggagaaatgctttatttaaatcataatttcaaaaataaa
ccaaaaaaggaagaaattggcaaatgttgaaaaagaagaatacaataaaa
ggaaatgttactcagaatcattttgtttattacattaaagaacctcagct
tatagatgatgactaaagttagttttctgatttgcacttatttacatgac
taatttactattttcagtttttcataaaaggcatttagagtcagcacttt
aagatgagaaactatattaagtttgttagtagagaactggcacattattc
cctctgatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66677193_66678358
seq2: B6Ng01-326D17.b_48_1200

seq1  GAATTCAATACTAATGATTAATGGAAATGTTTAGTTCATTCACTTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACTAATGATTAATGGAAATGTTTAGTTCATTCACTTTACTG  50

seq1  GAATATCATTTAGAATGGGCTTCTAGTTTCCGTCTGTTTTCAATTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCATTTAGAATGGGCTTCTAGTTTCCGTCTGTTTTCAATTCTTTC  100

seq1  TCAATGATTTTATTTTTAGCTCAGGTTGGTCTCATACTACATTTTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTTTATTTTTAGCTCAGGTTGGTCTCATACTACATTTTCCTAG  150

seq1  CAGTGTTTGAACTCCCTTGCTTTTTGCTCACAATACCGATTGAAGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTGAACTCCCTTGCTTTTTGCTCACAATACCGATTGAAGCCTGA  200

seq1  AAAATAATGCATATATACTGTCTCCCCTTTCTTTGTTTTAAAGTATCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGCATATATACTGTCTCCCCTTTCTTTGTTTTAAAGTATCTAT  250

seq1  TTCTGAGACTCCTGGAGCCTTAATTCATTATCTGATCCCAGACAAAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACTCCTGGAGCCTTAATTCATTATCTGATCCCAGACAAAGCAG  300

seq1  TACTATTCTTTCCTGTTCTCTCTTATCACCATGTCAAGTGAAAGGTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCTTTCCTGTTCTCTCTTATCACCATGTCAAGTGAAAGGTTAAG  350

seq1  TGCGCAGAGTGAATCTGAGATAAATTTAGAGATCAAGTCAAGACTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGAGTGAATCTGAGATAAATTTAGAGATCAAGTCAAGACTTTAAA  400

seq1  CATAGAAACCATCTGCCCAATACCCCCATCTTAAAAGAATCTTAGGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAACCATCTGCCCAATACCCCCATCTTAAAAGAATCTTAGGTTGG  450

seq1  GAGAAAAGCTTTGCTAGACACTATTTATCCTCAATATACTTCATTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCTTTGCTAGACACTATTTATCCTCAATATACTTCATTTTTCA  500

seq1  TATCATTTGTTGATTGATTTATTTTTTAATGCCTATGTCTCAGTCTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTGTTGATTGATTTATTTTTTAATGCCTATGTCTCAGTCTCTCA  550

seq1  ATAATAACCATTAGTTAACCTGCTGCATTTACAAATTTGTATAGCTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACCATTAGTTAACCTGCTGCATTTACAAATTTGTATAGCTTAAA  600

seq1  AGACCTATGTATTTATAAAAAATGAATACCACTAATTCCCTTCATGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTATGTATTTATAAAAAATGAATACCACTAATTCCCTTCATGAAGT  650

seq1  CAGTTACTTAGGTAATTACTCCACAGGAATTTTTTTTTTTTAAGTAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTTAGGTAATTACTCCACAGGAATTTTTTTTTTTTAAGTAAGGA  700

seq1  TGGGAAGCAGAAGGAATTAGCATCTGTCCCATATTTAGTGTATTAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCAGAAGGAATTAGCATCTGTCCCATATTTAGTGTATTAATTAT  750

seq1  TTTTGTTGCCATAATAAACATACAAAGACAATAGAAACTATTGGCTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCCATAATAAACATACAAAGACAATAGAAACTATTGGCTAAAA  800

seq1  GTGACTATGTTAGTTTATGGCTCCAGAGGGTTAAATAGTCTAAAACAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATGTTAGTTTATGGCTCCAGAGGGTTAAATAGTCTAAAACAGTG  850

seq1  GAAGAGGAATGGCTGCAAGTAACAAGATTAGGAAAACTCAGAGATCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAATGGCTGCAAGTAACAAGATTAGGAAAACTCAGAGATCATGA  900

seq1  CTTCAACTACAGAAAGCAGAGAATGAACTAGACTGGGGTGAAGACCTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTACAGAAAGCAGAGAATGAACTAGACTGGGGTGAAGACCTAAA  950

seq1  ATCCCAAAGTCTGTTTCGAGTGATTTCCATCCTCCATCAAGGCCCCATCT  1000
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AT-CCAAAGTCTGTTTCGAGTGATTTCCATCCTCCATCAAGG-CCCATCT  998

seq1  TCTAAAAGTTCAATAATCTCTGCAAATGGCAGCAACAACTGCAGATGAAG  1050
      ||||||||||||||||||||||||||||||||||   |||||||||| ||
seq2  TCTAAAAGTTCAATAATCTCTGCAAATGGCAGCA--CACTGCAGATG-AG  1045

seq1  TGTTCAAATGCCTTGGATGCTTTTCATGCAAACA-CTCACACTTTTGCTA  1099
      |||||||||||||||||||| ||||||||||||| ||||||| |||||||
seq2  TGTTCAAATGCCTTGGATGC-TTTCATGCAAACACCTCACAC-TTTGCTA  1093

seq1  AGTTCACCTACTTTCGTTTTCCGAACCTCTTTTTTCGTTAATAAAAAGGA  1149
      || ||| |||| |||| |||| |||||||||||||   ||||||||    
seq2  AG-TCA-CTACCTTCGGTTTCGGAACCTCTTTTTTTCGTAATAAAA---G  1138

seq1  ACAGAAATGGTCTCATT  1166
      ||||||   ||||||||
seq2  ACAGAA--TGTCTCATT  1153


seq1: chr4_66830672_66831797
seq2: B6Ng01-326D17.g_63_1174 (reverse)

seq1  TCTCATCAGAGGGGAATAATGTGCCAGTTTCTCTTTACCTTAACAAACTT  50
      |||||||||| |||||||||||||||||   ||| |||  ||||||||||
seq2  TCTCATCAGA-GGGAATAATGTGCCAGT---TCTCTAC--TAACAAACTT  44

seq1  AATATAGTTTTCTCATCTTTAAAGTGCTGACTCTAAATGCCTTTTTAATG  100
      ||||||| ||||||||| |||||||||||||||||||||||||||  |||
seq2  AATATAG-TTTCTCATC-TTAAAGTGCTGACTCTAAATGCCTTTT--ATG  90

seq1  AAAAACTGAAAATAGTAAATTAGTCATGTAAATAAGTGCAAATTCAGAAA  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAACTGAAAATAGTAAATTAGTCATGTAAATAAGTGCAAA-TCAGAAA  139

seq1  ACTTAACTTTAGTCATCATCTATAAGCTGAGGTTCTTTAATTGTAATAAA  200
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AC-TAACTTTAGTCATCATCTATAAGCTGAGGTTCTTTAA-TGTAATAAA  187

seq1  CAAAATGATTCTGAGTAACATTTCCTTTTATTTGTATTCTTTCTTTTTCA  250
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CAAAATGATTCTGAGTAACATTTCCTTTTA-TTGTATTC-TTCTTTTTCA  235

seq1  ACATTTGCCAATTTCTTCCTTTTTTGGTTTATTTTTGAAATTATGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCAATTTCTTCCTTTTTTGGTTTATTTTTGAAATTATGATTTA  285

seq1  AATAAAGCATTTCTCCTTCCCATTCC-TTCTCTAAAGCCTCCCATAAAAC  349
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATAAAGCATTTCTCCTTCCCATTCCTTTCTCTAAAGCCTCCCATAAAAC  335

seq1  TCTTCTACAATTCTTCAAATTCATGACATTGTTTTTGCATGCATATATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACAATTCTTCAAATTCATGACATTGTTTTTGCATGCATATATGT  385

seq1  ATTTGTATATATAAATATGTCTATATTACCTACTAAGTCTGTACAGTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATATATAAATATGTCTATATTACCTACTAAGTCTGTACAGTACT  435

seq1  CCCTCCGTGTGTATCCTCAGAGCTGACTATAGAGTGCTGCCCCACCAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCGTGTGTATCCTCAGAGCTGACTATAGAGTGCTGCCCCACCAGCT  485

seq1  GATGGGCTCATTCTTGGGGACAGTGACCTTCCCCATTCCCAGCTCTCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTCATTCTTGGGGACAGTGACCTTCCCCATTCCCAGCTCTCCTC  535

seq1  AGTTGCCTTTATTTGGGAATGTTGGGAATCTTGTGTGCTGGCATGTCGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTTTATTTGGGAATGTTGGGAATCTTGTGTGCTGGCATGTCGCT  585

seq1  TATCATTCTTGTTTAGCTCACATTTATAAGTACTAACACAAAGAACCAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCTTGTTTAGCTCACATTTATAAGTACTAACACAAAGAACCAAG  635

seq1  AAAATTAGTTAGAAACAGGCAAGAGGTTCCAGAAAATTAGTAGCAGGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGTTAGAAACAGGCAAGAGGTTCCAGAAAATTAGTAGCAGGCAA  685

seq1  TAACAATCAGTATTAGAAAGATGCTGTGTAACAAACTCAGTCTGGGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCAGTATTAGAAAGATGCTGTGTAACAAACTCAGTCTGGGTGTC  735

seq1  ACAGGAATACCAATAAGTTAGTAATTCACATCTCCAATGAATATTGTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATACCAATAAGTTAGTAATTCACATCTCCAATGAATATTGTGTA  785

seq1  TATGTTTAGGTAATAATCATTTGTACAACTTACTCATGTCCGTAATTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGGTAATAATCATTTGTACAACTTACTCATGTCCGTAATTCAG  835

seq1  AGACAATGAAGGTAGAGAGAAGCCCAATAACTGTAACAGGTGGGTGTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAAGGTAGAGAGAAGCCCAATAACTGTAACAGGTGGGTGTCAA  885

seq1  TTAATCCGTGCTGTTTCTCTCCATTTCACTACGTTATGAGATATCTAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCGTGCTGTTTCTCTCCATTTCACTACGTTATGAGATATCTAAGA  935

seq1  AGTAAGGAACAGGAGTACACTCAACCTCATCAAATACTTCAACTTCATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGAACAGGAGTACACTCAACCTCATCAAATACTTCAACTTCATCA  985

seq1  GCCTCCCAGGTTTTCTTTTTCCTATTGCTCTCTATGGACTCACTTACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGGTTTTCTTTTTCCTATTGCTCTCTATGGACTCACTTACACA  1035

seq1  CATATGTATATTTCTCTTCTGTAGGTGGGGGGGGGGGGTGCTTAGAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATATTTCTCTTCTGTAGGTGGGGGGGGGGGGTGCTTAGAAAAG  1085

seq1  CATGCAGGGTTGAAACTTATAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  CATGCAGGGTTGAAACTTATAGAATTC  1112


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