BAC Information

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BAC

Clone NameB6Ng01-327F12
Chromosome4 (Build37)
Map Location 142,789,349 - 142,905,051
singlet/doubletdoublet
Overlap genePrdm2, EG626575, LOC433776, Pdpn
Upstream geneEG665983, LOC546484, 6330411D24Rik, LOC666018
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327F12.bB6Ng01-327F12.g
ACCGA114915GA114916
length827528
definitionB6Ng01-327F12.b B6Ng01-327F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,904,253 - 142,905,051)(142,789,349 - 142,789,882)
sequence
gaattctctctaagcacaatccctgtgatccaagttagccagatttggct
attgcagtagaaaggatgcttaaggcgattggatattctcagcatggctc
gattgtctcagagtgttttattgctaaggatttagggagcccattttgaa
agacaaacactgagcaccaagtcctttctctgtataatcttatgtctccc
aagctaatcctctcaaaggagacagcttggctgactggttttcaagagga
gggtcaacaggagtgttttatcctccaggtaacctttagcaaatcttaat
ctcatgttttatcattacatgggaaaatgggtgtctgccaatggtacctg
gtagatggagaccatgggtgtccctaaatatcttataatgcccagggcat
gacttcctaaaaaagaattattgagttccaaatatcagcagtgccaaggt
tcagaagccgtgctgtggctgacaggtggggacatcgggagaagccgttt
caaacccttccgtgcagaaaccccacagtcggtgtctgtagctccctgct
gctccaccacctcctggagtcccctcttagctctcctccagtaccatcca
actgtccttcctgcctcagtgtctccctagtgctcccccttccacctgcc
tgtctccctcttcatcctcagcaggcagctgaaggcgcctgtcttctctt
cacagaagagacacttcactgaagtctcctcacttcacaaagttgccccc
ccaccccactattctttaggttcagggatgttgtttgtttgtttgtttga
ttgattgattgattgattgattgattt
actctgtagaccaggctgacctcaaactcagaaatctgcctgcctctgcc
tctcaagtactgggattaaagacgtacgccaccactacctggctcacttt
tttaaaaaaatatttctttttaaatgagtacactatagctgtcttcagac
acaccagaacagggtattggatcccattacagatggttgtgagccaccat
gtggttgctgggaattgaactcaggacctctggaaaagctgtcagtgttc
ttacttaacccctgagccatctctccagccccacactttcttttaaaagt
tcactacatagtcatgtttactggaccctcttctctgttacttctaatcc
taaccattagaaaactcatctttgtaggtaagggcacttgctgccaagcc
tgatagcctgagttcaatccccagaacacaagtgaatagaaagaaccaat
tctctcagttgttttgacctacacagacacacagacacagatacacacat
agacacacacagggggagggggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142904253_142905051
seq2: B6Ng01-327F12.b_75_873 (reverse)

seq1  AAATCAATCAATCAATCAATCAATCAATCAAACAAACAAACAAACAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATCAATCAATCAATCAATCAATCAAACAAACAAACAAACAACAT  50

seq1  CCCTGAACCTAAAGAATAGTGGGGTGGGGGGGCAACTTTGTGAAGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCTAAAGAATAGTGGGGTGGGGGGGCAACTTTGTGAAGTGAGG  100

seq1  AGACTTCAGTGAAGTGTCTCTTCTGTGAAGAGAAGACAGGCGCCTTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAGTGAAGTGTCTCTTCTGTGAAGAGAAGACAGGCGCCTTCAGC  150

seq1  TGCCTGCTGAGGATGAAGAGGGAGACAGGCAGGTGGAAGGGGGAGCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGAGGATGAAGAGGGAGACAGGCAGGTGGAAGGGGGAGCACTA  200

seq1  GGGAGACACTGAGGCAGGAAGGACAGTTGGATGGTACTGGAGGAGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACACTGAGGCAGGAAGGACAGTTGGATGGTACTGGAGGAGAGCTA  250

seq1  AGAGGGGACTCCAGGAGGTGGTGGAGCAGCAGGGAGCTACAGACACCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGACTCCAGGAGGTGGTGGAGCAGCAGGGAGCTACAGACACCGAC  300

seq1  TGTGGGGTTTCTGCACGGAAGGGTTTGAAACGGCTTCTCCCGATGTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTTCTGCACGGAAGGGTTTGAAACGGCTTCTCCCGATGTCCCC  350

seq1  ACCTGTCAGCCACAGCACGGCTTCTGAACCTTGGCACTGCTGATATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCAGCCACAGCACGGCTTCTGAACCTTGGCACTGCTGATATTTGG  400

seq1  AACTCAATAATTCTTTTTTAGGAAGTCATGCCCTGGGCATTATAAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATAATTCTTTTTTAGGAAGTCATGCCCTGGGCATTATAAGATAT  450

seq1  TTAGGGACACCCATGGTCTCCATCTACCAGGTACCATTGGCAGACACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACACCCATGGTCTCCATCTACCAGGTACCATTGGCAGACACCCA  500

seq1  TTTTCCCATGTAATGATAAAACATGAGATTAAGATTTGCTAAAGGTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGTAATGATAAAACATGAGATTAAGATTTGCTAAAGGTTACC  550

seq1  TGGAGGATAAAACACTCCTGTTGACCCTCCTCTTGAAAACCAGTCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATAAAACACTCCTGTTGACCCTCCTCTTGAAAACCAGTCAGCCA  600

seq1  AGCTGTCTCCTTTGAGAGGATTAGCTTGGGAGACATAAGATTATACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCCTTTGAGAGGATTAGCTTGGGAGACATAAGATTATACAGAG  650

seq1  AAAGGACTTGGTGCTCAGTGTTTGTCTTTCAAAATGGGCTCCCTAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTGGTGCTCAGTGTTTGTCTTTCAAAATGGGCTCCCTAAATCC  700

seq1  TTAGCAATAAAACACTCTGAGACAATCGAGCCATGCTGAGAATATCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATAAAACACTCTGAGACAATCGAGCCATGCTGAGAATATCCAAT  750

seq1  CGCCTTAAGCATCCTTTCTACTGCAATAGCCAAATCTGGCTAACTTGGA  799
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAAGCATCCTTTCTACTGCAATAGCCAAATCTGGCTAACTTGGA  799

seq1: chr4_142789349_142789882
seq2: B6Ng01-327F12.g_63_596

seq1  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGACCTCAAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCTCAAGTACTGGGATTAAAGACGTACGCCACCACTACCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCAAGTACTGGGATTAAAGACGTACGCCACCACTACCTGGCT  100

seq1  CACTTTTTTAAAAAAATATTTCTTTTTAAATGAGTACACTATAGCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTAAAAAAATATTTCTTTTTAAATGAGTACACTATAGCTGTCT  150

seq1  TCAGACACACCAGAACAGGGTATTGGATCCCATTACAGATGGTTGTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACCAGAACAGGGTATTGGATCCCATTACAGATGGTTGTGAGC  200

seq1  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAAAGCTGTCA  250

seq1  GTGTTCTTACTTAACCCCTGAGCCATCTCTCCAGCCCCACACTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTACTTAACCCCTGAGCCATCTCTCCAGCCCCACACTTTCTTTT  300

seq1  AAAAGTTCACTACATAGTCATGTTTACTGGACCCTCTTCTCTGTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCACTACATAGTCATGTTTACTGGACCCTCTTCTCTGTTACTTC  350

seq1  TAATCCTAACCATTAGAAAACTCATCTTTGTAGGTAAGGGCACTTGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTAACCATTAGAAAACTCATCTTTGTAGGTAAGGGCACTTGCTGC  400

seq1  CAAGCCTGATAGCCTGAGTTCAATCCCCAGAACACAAGTGAATAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGATAGCCTGAGTTCAATCCCCAGAACACAAGTGAATAGAAAGA  450

seq1  ACCAATTCTCTCAGTTGTTTTGACCTACACAGACACACAGACACAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCTCTCAGTTGTTTTGACCTACACAGACACACAGACACAGATAC  500

seq1  ACACATAGACACACACAGGGGGAGGGGGAGGGGG  534
      ||||||||||||||||||||||||||||||||||
seq2  ACACATAGACACACACAGGGGGAGGGGGAGGGGG  534