BAC Information

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BAC

Clone NameB6Ng01-328M03
Chromosome4 (Build37)
Map Location 67,124,481 - 67,226,305
singlet/doubletdoublet
Overlap geneHmgb1-rs18
Upstream geneLOC667499, Tlr4, LOC100039379
Downstream geneLOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328M03.bB6Ng01-328M03.g
ACCGA115929GA115930
length1,1521,110
definitionB6Ng01-328M03.b B6Ng01-328M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,225,154 - 67,226,305)(67,124,481 - 67,125,593)
sequence
gaattcccatcagtagattttctgaattgggcttaagcatatgaattgag
agaaaagattctggctgatttttgtgatctgagaatatgtaaaacacatg
aatgaatcaggtgttaaacttttatgagcatagatgtttgggatatgtga
tacacatgaattccgtaaagccatgctgaatatatggatgtatgttgcca
agtagggctaggatttgagccttttcacctcacttttaattcaagcaaaa
aaaaaaaaattaggaaactaaaataggaaacaaatagatttctctatttc
ccatttgtaccaaagcatttcttctattttaccttacccttgttttaact
tcttttcatagcaaccagaaagtaaacaggttttttgtggttgatgtgat
atctcctgctgtttataaacctacaaaaaattttgcaagatttaagagaa
gcctactgctttttagatattctcaaaaaaatgctttctagccttagggg
acatttgtccattaaaaatcttttgatctatatcctcctatattactgat
taggataaaaatttaattaaagataaataaacgtgtttccattgtggctt
gggaaataaagcattaatagcatagtgactgggactcagaatgttaaata
gcagaaaatgagagactcagcccattttgtatcaattggtcctgctcagc
agaatgcaaatcaggaaggtacttaatctcaggcattgcttttaatttta
ctctcgatgtgtacgcctttatagttccagatgcatttgcaaaattaaaa
gtataatttatctccaaaagcagtaatctgtcagtgtggtgacttcgttt
tcatgaatagctggcactaaacaattttcattcactgctgggcctgctct
caggaagagcagtggaacaacaatgtcctgcttcaaggataagtgacagc
gatataagccagcatttatgcctccttccagcatatacaggtgattgaac
cagacacgtccattcttccacccttcactgccaccactagctgttttaga
ggtaaaaacctagtagaatgtttgagaagcccttccactgaagactcgaa
tggagctgtttcaccgccttatatagaattgatgtgttcttccctagctc
tg

gaattcatttttctagataccataaagaagatctatctatctatctatct
atctatctatctatctatctatctatctatctatctatctaagtcttaga
taatgtttatgaatgcttggaatcttttagaatagtctaggtgtcttcat
aacaaatgaggttttgttaccataggatcactaggagatgtactgctgaa
caccgcaaactctacaaacaaaattaactctacgtacaagggagctgggt
taaatgtctgtgataaagaccagcagtgacacatcccagatttatatggc
tgtatttacaatgaagggacatggtctatttttatttgatctgcaccatc
caaaaagaaaattggaattataattaaagcaagggaaatgataacttaaa
cattgattttccaataaagatgtcgactctcagaacattgtccagtctct
atgtcccacagcttgctgggcaactttaaatgaatgtgatccaattcttc
aataagttgccttacaccagactgtgtacaattcagtccccgatgactca
tctttatagctaagatattgttcgggtttgtattaaatgaagggtgcctt
agaaaatcaggaagaagcatcctatgaggaacagcagtttactattggag
attctttatagatccacctctgataaaatttattcctcatcactatttta
gatttcttcaacctcctatagagattaaataaaaaaagaaatagcattta
tctgtacaggtaaaatttacagcacctataatcctttcataaatagatat
atcaaccaccacattaataaaaagtgcaatctgaaggcagaaaggtcatt
atatttacttactgtcaaatataaagctgtagttgcaagtcatgcatgat
tttaatatggcttgataatatgctatcagttggtgggagctatagattga
actcatatagatttttggcttcaactttcaagtaatcaatcatgtcagat
atgaaaatcacttcattctttcaattgagaagagatgtgaattaaaatgc
cagtctagatattatcgctgtaatcaatcatgcaacttataccatttaat
ttagtaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67225154_67226305
seq2: B6Ng01-328M03.b_48_1199 (reverse)

seq1  CAGAGCTTAGGG--GAAGACATCA--TCTATAT-AGGCGGTGAAAACAGG  45
      |||||| |||||  ||| ||||||  ||||||| |||||||| |||||| 
seq2  CAGAGC-TAGGGAAGAACACATCAATTCTATATAAGGCGGTG-AAACAGC  48

seq1  CTCATTCGGAGTCTTTCAGTGGAAGGGC-TCTCAAACATTCCTACTAGGT  94
        ||||| ||||| |||||||||||||| ||||||||||| |||||||||
seq2  TCCATTC-GAGTC-TTCAGTGGAAGGGCTTCTCAAACATT-CTACTAGGT  95

seq1  TTTATACTCTAAAACAGCTAGTGGTGGGCAGTGAAGGGTGGAAGAATGGA  144
      |||   ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTACCTCTAAAACAGCTAGTGGT-GGCAGTGAAGGGTGGAAGAATGGA  144

seq1  CGTGTCTGGTTCAATCACCTGTATATGCTGGAAGGAGGCATAAATGCTGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTGGTTCAATCACCTGTATATGCTGGAAGGAGGCATAAATGCTGG  194

seq1  CTTATATCGCTGTCACTTATCCTTGAAGCAGGACATTGTTGTTCCACTGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCGCTGTCACTTATCCTTGAAGCAGGACATTGTTGTTCCACTGC  244

seq1  TCTTCCTGAGAGCAGGCCCAGCAGTGAATGAAAATTGTTTAGTGCCAGCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGAGAGCAGGCCCAGCAGTGAATGAAAATTGTTTAGTGCCAGCT  294

seq1  ATTCATGAAAACGAAGTCACCACACTGACAGATTACTGCTTTTGGAGATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAAAACGAAGTCACCACACTGACAGATTACTGCTTTTGGAGATA  344

seq1  AATTATACTTTTAATTTTGCAAATGCATCTGGAACTATAAAGGCGTACAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTTTTAATTTTGCAAATGCATCTGGAACTATAAAGGCGTACAC  394

seq1  ATCGAGAGTAAAATTAAAAGCAATGCCTGAGATTAAGTACCTTCCTGATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGAGTAAAATTAAAAGCAATGCCTGAGATTAAGTACCTTCCTGATT  444

seq1  TGCATTCTGCTGAGCAGGACCAATTGATACAAAATGGGCTGAGTCTCTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTGCTGAGCAGGACCAATTGATACAAAATGGGCTGAGTCTCTCA  494

seq1  TTTTCTGCTATTTAACATTCTGAGTCCCAGTCACTATGCTATTAATGCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTATTTAACATTCTGAGTCCCAGTCACTATGCTATTAATGCTT  544

seq1  TATTTCCCAAGCCACAATGGAAACACGTTTATTTATCTTTAATTAAATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCAAGCCACAATGGAAACACGTTTATTTATCTTTAATTAAATTT  594

seq1  TTATCCTAATCAGTAATATAGGAGGATATAGATCAAAAGATTTTTAATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAATCAGTAATATAGGAGGATATAGATCAAAAGATTTTTAATGG  644

seq1  ACAAATGTCCCCTAAGGCTAGAAAGCATTTTTTTGAGAATATCTAAAAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTCCCCTAAGGCTAGAAAGCATTTTTTTGAGAATATCTAAAAAG  694

seq1  CAGTAGGCTTCTCTTAAATCTTGCAAAATTTTTTGTAGGTTTATAAACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCTTCTCTTAAATCTTGCAAAATTTTTTGTAGGTTTATAAACAG  744

seq1  CAGGAGATATCACATCAACCACAAAAAACCTGTTTACTTTCTGGTTGCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATATCACATCAACCACAAAAAACCTGTTTACTTTCTGGTTGCTA  794

seq1  TGAAAAGAAGTTAAAACAAGGGTAAGGTAAAATAGAAGAAATGCTTTGGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAGTTAAAACAAGGGTAAGGTAAAATAGAAGAAATGCTTTGGT  844

seq1  ACAAATGGGAAATAGAGAAATCTATTTGTTTCCTATTTTAGTTTCCTAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGAAATAGAGAAATCTATTTGTTTCCTATTTTAGTTTCCTAAT  894

seq1  TTTTTTTTTTTTGCTTGAATTAAAAGTGAGGTGAAAAGGCTCAAATCCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGCTTGAATTAAAAGTGAGGTGAAAAGGCTCAAATCCTA  944

seq1  GCCCTACTTGGCAACATACATCCATATATTCAGCATGGCTTTACGGAATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTTGGCAACATACATCCATATATTCAGCATGGCTTTACGGAATT  994

seq1  CATGTGTATCACATATCCCAAACATCTATGCTCATAAAAGTTTAACACCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATCACATATCCCAAACATCTATGCTCATAAAAGTTTAACACCT  1044

seq1  GATTCATTCATGTGTTTTACATATTCTCAGATCACAAAAATCAGCCAGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTCATGTGTTTTACATATTCTCAGATCACAAAAATCAGCCAGAA  1094

seq1  TCTTTTCTCTCAATTCATATGCTTAAGCCCAATTCAGAAAATCTACTGAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCTCAATTCATATGCTTAAGCCCAATTCAGAAAATCTACTGAT  1144

seq1  GGGAATTC  1152
      ||||||||
seq2  GGGAATTC  1152


seq1: chr4_67124481_67125593
seq2: B6Ng01-328M03.g_70_1179

seq1  GAATTCATTTTTCTAGATACCATAAAGAAGATCTATCTATCTATCTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCTAGATACCATAAAGAAGATCTATCTATCTATCTATCT  50

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAGTCTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAAGTCTTAGA  100

seq1  TAATGTTTATGAATGCTTGGAATCTTTTAGAATAGTCTAGGTGTCTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTATGAATGCTTGGAATCTTTTAGAATAGTCTAGGTGTCTTCAT  150

seq1  AACAAATGAGGTTTTGTTACCATAGGATCACTAGGAGATGTACTGCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGAGGTTTTGTTACCATAGGATCACTAGGAGATGTACTGCTGAA  200

seq1  CACCGCAAACTCTACAAACAAAATTAACTCTACGTACAAGGGAGCTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCAAACTCTACAAACAAAATTAACTCTACGTACAAGGGAGCTGGGT  250

seq1  TAAATGTCTGTGATAAAGACCAGCAGTGACACATCCCAGATTTATATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCTGTGATAAAGACCAGCAGTGACACATCCCAGATTTATATGGC  300

seq1  TGTATTTACAATGAAGGGACATGGTCTATTTTTATTTGATCTGCACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTACAATGAAGGGACATGGTCTATTTTTATTTGATCTGCACCATC  350

seq1  CAAAAAGAAAATTGGAATTATAATTAAAGCAAGGGAAATGATAACTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAAATTGGAATTATAATTAAAGCAAGGGAAATGATAACTTAAA  400

seq1  CATTGATTTTCCAATAAAGATGTCGACTCTCAGAACATTGTCCAGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTTTCCAATAAAGATGTCGACTCTCAGAACATTGTCCAGTCTCT  450

seq1  ATGTCCCACAGCTTGCTGGGCAACTTTAAATGAATGTGATCCAATTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCACAGCTTGCTGGGCAACTTTAAATGAATGTGATCCAATTCTTC  500

seq1  AATAAGTTGCCTTACACCAGACTGTGTACAATTCAGTCCCCGATGACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTGCCTTACACCAGACTGTGTACAATTCAGTCCCCGATGACTCA  550

seq1  TCTTTATAGCTAAGATATTGTTCGGGTTTGTATTAAATGAAGGGTGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAGCTAAGATATTGTTCGGGTTTGTATTAAATGAAGGGTGCCTT  600

seq1  AGAAAATCAGGAAGAAGCATCCTATGAGGAACAGCAGTTTACTATTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAGGAAGAAGCATCCTATGAGGAACAGCAGTTTACTATTGGAG  650

seq1  ATTCTTTATAGATCCACCTCTGATAAAATTTATTCCTCATCACTATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATAGATCCACCTCTGATAAAATTTATTCCTCATCACTATTTTA  700

seq1  GATTTCTTCAACCTCCTATAGAGATTAAATAAAAAAAGAAATAGCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCAACCTCCTATAGAGATTAAATAAAAAAAGAAATAGCATTTA  750

seq1  TCTGTACAGGTAAAATTTACAGCACCTATAATCCTTTCATAAATAGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGGTAAAATTTACAGCACCTATAATCCTTTCATAAATAGATAT  800

seq1  ATCAACCACCACATTAATAAAAAGTGCAATCTGAAGGCAG-AAGGTCATT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAACCACCACATTAATAAAAAGTGCAATCTGAAGGCAGAAAGGTCATT  850

seq1  ATATTTACTTACTGTCAAATATAAAGCTGTAGTTGCAAGTCATGCATGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTTACTGTCAAATATAAAGCTGTAGTTGCAAGTCATGCATGAT  900

seq1  TTTAATATGGCTTGATAATATGCTATCAGTTGGTGGGAGCTATAGATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATGGCTTGATAATATGCTATCAGTTGGTGGGAGCTATAGATTGA  950

seq1  ACTCATATAGATTTTTGGCTTCAACTTTCAAGTAATCAATCATGTCAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTCATATAGATTTTTGGCTTCAACTTTCAAGTAATCAATCATGTCA-GA  999

seq1  TATGAAAATCACTTCATTCCTTTCAATTGAGAAGAAGATGTGATTTAAAA  1049
      |||||||||||||||||| ||||||||||||||| |||||||| ||||||
seq2  TATGAAAATCACTTCATT-CTTTCAATTGAGAAG-AGATGTGAATTAAAA  1047

seq1  TGCCAGTCCTTAGATA-TATCGCTGTAATCAATCATGCAAACTATACCAT  1098
      ||||||||  |||||| |||||||||||||||||||||||  ||||||||
seq2  TGCCAGTC--TAGATATTATCGCTGTAATCAATCATGCAACTTATACCAT  1095

seq1  TTAATTTAGTAAATT  1113
      |||||||||||||||
seq2  TTAATTTAGTAAATT  1110


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