BAC Information

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BAC

Clone NameB6Ng01-328N06
Chromosome4 (Build37)
Map Location 62,225,834 - 62,366,222
singlet/doubletdoublet
Overlap geneRgs3
Upstream geneLOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N06.bB6Ng01-328N06.g
ACCGA115983GA115984
length8781,146
definitionB6Ng01-328N06.b B6Ng01-328N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,225,834 - 62,226,703)(62,365,068 - 62,366,222)
sequence
gaattcttctgggaaagagtacgaggtagggtggaagaatgcttgggtct
agcttgtacaggccctagatgctagtggatagccaatggataaccagtga
ctgctcttgataagactgaattactgtttcagaaaatcttgatccagtgg
ccatgtgaagctgtggagggaccagggagactgagcaggaggctttcctg
gaagttagggtgggaggtgcttggggcctggactagtgggtgtcacttga
cttgtagggagtctgagaagacacggactgaacagtgaagatgggaagga
atggaggagagggaagagccagtgctttcagccagattccaccaggtgct
gtctctggcagagtcaaagtcaagtggaggaggagccagtcggaggaagg
aagaattcatccatcaagcctttatgtggtccagtgaaggctgcatttcc
ctgtggaaactcagtgtgtggggctaaaaacaaaaaacgaaaaacaaaca
aaaaaagcacaaacgtaaagagaagacacgcagagctgacaggacaattg
cagctaatagaagctgtcccagttcccctgctccaagtgcctccaaaggg
aggccaagatggggggagggaaattcaccagtcccctttccatttgtaat
gccatgtgattttatgagtgacatagggattatttttagggcaatttgtg
gctattcacaatctatgtcttgaaatgctggttgtagaattgaaattcct
gggcaagattttagccacccacccgctcgccctgccctcaccccagtttg
tggcaagtgctaattcgggcagtcggcagctatgaagacttctgctgcta
ctgtgcctggagtagttcccttctctga
gaattccatctgcctgactctgttctccaggactttggtttccatggcaa
cttggggtttggaaggtagaggggtctggctcatggctatatccccgaaa
ccccccaaaaaagaagacagtgattctctgggtgtggccagtcacttttc
caagcacaagacgtcgtcacgggagagtcaggccagggtggacatcctaa
gctctgatctagctctgctttgaaccacttgaagaaacaagaagtggctt
ggcaatcctccctagacctcaggtgtcaggtcctccagctcaggcctgga
agaagcctgagaaatgtccttgctctcaactagaaacacagctctgcttc
ccaaatgttcagccctaatgagggtccacggtgggaaaggcctttactgt
ttacaaagccaaatgggctcacttgctaggcctactgctaggtttccggg
gcctggggaagcaagactcagcactctcctgggggcagcaaaatgacttc
caacctatatggagtccctgctccatgcctggtccagggcaagtcctttg
tatgcattggctcactgggccttcatccccagagctaagtacacgacgtc
ttccctatcataaggctcggggccccatagcgacaggccagcattagagc
aagtcagtagcgtcaacggttcaaacctggaactgcatcattccacttcc
cgtgaacctttggagacagaacagccacacctgacggtgctagccagagc
ttccctgacaaagcaggaaactagcgtcgcagccaggcccgtgtgtagca
tccgcagaggggcagaagtcaggtgcccagctcacccactcctgccaagt
gaagccccaagtctgcaacaggagtaggactacagaccctctccaactca
ggccctccccaagggtcctgcatggctcagccccaaacttcctggtggag
atgacttgctctgaccctctcctgtgcagcgggtgcagacatagcatggc
tgaaagaagagtgactgccaggcatgtcctctgcaacccagctgcctggt
gacagacccgtgccatgacttcaggcaagggaaaaaactctaggcagtgc
tcctaaacttcttaacgcatgaacgtcaacagttcctcaagtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62225834_62226703
seq2: B6Ng01-328N06.b_47_924

seq1  GAATTCTTCTGGGAAAGAGTACGAGGTAGGGTGGAAGAATGCTTGGGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGGAAAGAGTACGAGGTAGGGTGGAAGAATGCTTGGGTCT  50

seq1  AGCTTGTACAGGCCCTAGATGCTAGTGGATAGCCAATGGATAACCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTACAGGCCCTAGATGCTAGTGGATAGCCAATGGATAACCAGTGA  100

seq1  CTGCTCTTGATAAGACTGAATTACTGTTTCAGAAAATCTTGATCCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGATAAGACTGAATTACTGTTTCAGAAAATCTTGATCCAGTGG  150

seq1  CCATGTGAAGCTGTGGAGGGACCAGGGAGACTGAGCAGGAGGCTTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAGCTGTGGAGGGACCAGGGAGACTGAGCAGGAGGCTTTCCTG  200

seq1  GAAGTTAGGGTGGGAGGTGCTTGGGGCCTGGACTAGTGGGTGTCACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGGGTGGGAGGTGCTTGGGGCCTGGACTAGTGGGTGTCACTTGA  250

seq1  CTTGTAGGGAGTCTGAGAAGACACGGACTGAACAGTGAAGATGGGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGGAGTCTGAGAAGACACGGACTGAACAGTGAAGATGGGAAGGA  300

seq1  ATGGAGGAGAGGGAAGAGCCAGTGCTTTCAGCCAGATTCCACCAGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGAGGGAAGAGCCAGTGCTTTCAGCCAGATTCCACCAGGTGCT  350

seq1  GTCTCTGGCAGAGTCAAAGTCAAGTGGAGGAGGAGCCAGTCGGAGGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGCAGAGTCAAAGTCAAGTGGAGGAGGAGCCAGTCGGAGGAAGG  400

seq1  AAGAATTCATCCATCAAGCCTTTATGTGGTCCAGTGAAGGCTGCATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCATCCATCAAGCCTTTATGTGGTCCAGTGAAGGCTGCATTTCC  450

seq1  CTGTGGAAACTCAGTGTGTGGGGCTAAAAACAAAAAACGAAAAACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAACTCAGTGTGTGGGGCTAAAAACAAAAAACGAAAAACAAACA  500

seq1  AAAAAAGCACAAACGTAAAGAGAAGACACGCAGAGCTGACAGGACAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCACAAACGTAAAGAGAAGACACGCAGAGCTGACAGGACAATTG  550

seq1  CAGCTAATAGAAGCTGTCCCAGTTCCCCTGCTCCAAGTGCCTCCAAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATAGAAGCTGTCCCAGTTCCCCTGCTCCAAGTGCCTCCAAAGGG  600

seq1  AGGCCAAGATGGGGGGAGGGAAATTCACCAGTCCCCTTTCCATTTGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGATGGGGGGAGGGAAATTCACCAGTCCCCTTTCCATTTGTAAT  650

seq1  GCCATGTGATTTTATGAGTGACATAGGGATTA-TTTTAGGGCAA-TTGTG  698
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GCCATGTGATTTTATGAGTGACATAGGGATTATTTTTAGGGCAATTTGTG  700

seq1  GCTATTCACAATCTATGTCTTG-AATGCTGGTTGTAGAATTGAAATTCCT  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTATTCACAATCTATGTCTTGAAATGCTGGTTGTAGAATTGAAATTCCT  750

seq1  -GGCAAGA-TTTAGCCACCCACCCGCTCGCCCTGCCCTCACCCCAGTTTG  795
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGATTTTAGCCACCCACCCGCTCGCCCTGCCCTCACCCCAGTTTG  800

seq1  TGGCAGGTGCTAA-TCGGGCAGTCGGCAGCTATGAAGACTTCTGCTGCTA  844
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGCTAATTCGGGCAGTCGGCAGCTATGAAGACTTCTGCTGCTA  850

seq1  CTGTG-CTGGAGTAGTTCAC-TCTCTGA  870
      ||||| |||||||||||| | |||||||
seq2  CTGTGCCTGGAGTAGTTCCCTTCTCTGA  878

seq1: chr4_62365068_62366222
seq2: B6Ng01-328N06.g_69_1214 (reverse)

seq1  CAACA--TGAGGAACTGTTGAACGGTCACTGCGTTAAGAAGGTTGAGAAC  48
      |||||  ||||||||||||| ||| ||| ||||||||||| ||| || | 
seq2  CAACACTTGAGGAACTGTTG-ACGTTCA-TGCGTTAAGAA-GTTTAGGAG  47

seq1  CACTGCCCTAGATGTTTTTTCCTTGCCTGGAGTCATGGGCACGGGTCTGT  98
      ||||| ||||||  ||||| ||||||||| |||||| |||||||||||||
seq2  CACTG-CCTAGAGTTTTTTCCCTTGCCTGAAGTCAT-GGCACGGGTCTGT  95

seq1  CCACCAGGCAGCTGGGGTTGCAGAGGACATGGCCTGGCAGTCACTCTCTT  148
       |||||||||||| |||||||||||||||| ||||||||||||||||  |
seq2  -CACCAGGCAGCT-GGGTTGCAGAGGACAT-GCCTGGCAGTCACTCTTCT  142

seq1  CTCAGCCATGCTATGTCTGCACCCCGCTGCACAGGGAGAGGGTCAGAGCA  198
       |||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  TTCAGCCATGCTATGTCTGCA-CCCGCTGCACA-GGAGAGGGTCAGAGCA  190

seq1  AGTCATCTCCACCAGGAAGTTTGGGGGCTGAGCCATGCAGGACCCTTGGG  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCATCTCCACCAGGAAGTTT-GGGGCTGAGCCATGCAGGACCCTTGGG  239

seq1  GAGGGCCTGAGTTGGAGAGGGTCTGTAGTCCTACTCCTGTTGCAGACTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTGAGTTGGAGAGGGTCTGTAGTCCTACTCCTGTTGCAGACTTG  289

seq1  GGGCTTCACTTGGCAGGAGTGGGTGAGCTGGGCACCTGACTTCTGCCCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCACTTGGCAGGAGTGGGTGAGCTGGGCACCTGACTTCTGCCCCT  339

seq1  CTGCGGATGCTACACACGGGCCTGGCTGCGACGCTAGTTTCCTGCTTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGATGCTACACACGGGCCTGGCTGCGACGCTAGTTTCCTGCTTTGT  389

seq1  CAGGGAAGCTCTGGCTAGCACCGTCAGGTGTGGCTGTTCTGTCTCCAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGCTCTGGCTAGCACCGTCAGGTGTGGCTGTTCTGTCTCCAAAG  439

seq1  GTTCACGGGAAGTGGAATGATGCAGTTCCAGGTTTGAACCGTTGACGCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACGGGAAGTGGAATGATGCAGTTCCAGGTTTGAACCGTTGACGCTA  489

seq1  CTGACTTGCTCTAATGCTGGCCTGTCGCTATGGGGCCCCGAGCCTTATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGCTCTAATGCTGGCCTGTCGCTATGGGGCCCCGAGCCTTATGA  539

seq1  TAGGGAAGACGTCGTGTACTTAGCTCTGGGGATGAAGGCCCAGTGAGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGACGTCGTGTACTTAGCTCTGGGGATGAAGGCCCAGTGAGCCA  589

seq1  ATGCATACAAAGGACTTGCCCTGGACCAGGCATGGAGCAGGGACTCCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAAAGGACTTGCCCTGGACCAGGCATGGAGCAGGGACTCCATA  639

seq1  TAGGTTGGAAGTCATTTTGCTGCCCCCAGGAGAGTGCTGAGTCTTGCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGAAGTCATTTTGCTGCCCCCAGGAGAGTGCTGAGTCTTGCTTC  689

seq1  CCCAGGCCCCGGAAACCTAGCAGTAGGCCTAGCAAGTGAGCCCATTTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCCGGAAACCTAGCAGTAGGCCTAGCAAGTGAGCCCATTTGGC  739

seq1  TTTGTAAACAGTAAAGGCCTTTCCCACCGTGGACCCTCATTAGGGCTGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAACAGTAAAGGCCTTTCCCACCGTGGACCCTCATTAGGGCTGAA  789

seq1  CATTTGGGAAGCAGAGCTGTGTTTCTAGTTGAGAGCAAGGACATTTCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGAAGCAGAGCTGTGTTTCTAGTTGAGAGCAAGGACATTTCTCA  839

seq1  GGCTTCTTCCAGGCCTGAGCTGGAGGACCTGACACCTGAGGTCTAGGGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTCCAGGCCTGAGCTGGAGGACCTGACACCTGAGGTCTAGGGAG  889

seq1  GATTGCCAAGCCACTTCTTGTTTCTTCAAGTGGTTCAAAGCAGAGCTAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAAGCCACTTCTTGTTTCTTCAAGTGGTTCAAAGCAGAGCTAGA  939

seq1  TCAGAGCTTAGGATGTCCACCCTGGCCTGACTCTCCCGTGACGACGTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTTAGGATGTCCACCCTGGCCTGACTCTCCCGTGACGACGTCTT  989

seq1  GTGCTTGGAAAAGTGACTGGCCACACCCAGAGAATCACTGTCTTCTTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGAAAAGTGACTGGCCACACCCAGAGAATCACTGTCTTCTTTTT  1039

seq1  TGGGGGGTTTCGGGGATATAGCCATGAGCCAGACCCCTCTACCTTCCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTTTCGGGGATATAGCCATGAGCCAGACCCCTCTACCTTCCAAA  1089

seq1  CCCCAAGTTGCCATGGAAACCAAAGTCCTGGAGAACAGAGTCAGGCAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTTGCCATGGAAACCAAAGTCCTGGAGAACAGAGTCAGGCAGAT  1139

seq1  GGAATTC  1155
      |||||||
seq2  GGAATTC  1146