BAC Information

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BAC

Clone NameB6Ng01-328P23
Chromosome4 (Build37)
Map Location 77,416,534 - 77,535,681
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328P23.bB6Ng01-328P23.g
ACCGA116098GA116099
length1,1371,118
definitionB6Ng01-328P23.b B6Ng01-328P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,416,534 - 77,417,672)(77,534,543 - 77,535,681)
sequence
gaattcacagggtttaatagctgattattgtgttattatctttcagcatt
actttccttcttgggctttgtcttttatagcatgggatatgattgaaatg
cagtacttaaatttcaatcagaaggtttctatttttggagatattgaaag
caaatttatctactatggttaagacaatgattgtctctagaatatacagg
atagcagattctgtacattgtaaaccaaaattgcaggggactagaagtct
acgggtggtaaacagagatggatgacatcattttagacatagaaattttg
ttttcccaatcactggaaaatatgttttcccctatatacttcctccttat
tggattactactaactatattaatgagtagtgagaaatggagggttcacc
agaggaatgcattttgataaaaatagcatagtttcccaatctataagaaa
tactagtcttacatgagagtttggacccaaaaggactattcacagatcac
aaagttccaaatgacacctggtccctacacactgtagtgagcatgtattc
ctttctactatctccacacaggacagaggagatgcaaagtttatcataaa
acaaaagagaagtaattcttattaaagaaaggcaacatgtaaaactcaaa
tttataacgatgaaggacaattagctgtggtgaggcattcactttcagta
taataaatgagggtaacacatacagactagagatctttctgaaataacct
gcaaaagctataacccatatggaaagaaatcattctaagaaggagaaagg
agagtatgaaatatgaagtcaaaaaaatttaagttattgctaaaatttta
agataaagttatgctaacacaatctgtcttctaaatcatcatggactgag
gggtgttctgagtaacttgcattagaagtgtagcttataaaatgtagtgc
attatgaggtattgcagcattagctcctgtgtagtatgtgtgctactata
tgaatggatactgttcaaatgcactgtttgtagctaactcatttagttct
aaacaaataactgtggagggtgatttgtatactatcctttattttaaaat
gagagtatgaagccaaaaatctctaatctctggactc

gaattcttggcattggcaagcactgcatctgtaatataattggaatcctt
gaactcgaacttggcaaatgggcctcactcattagcagtggctgttccac
actgtgtgaatattagaaccggcaacctgctattaagtttaaggttttgg
aagatacaaacttatacatatttaagagcgtgaacagttacttcatttcc
ctggctaccagtctattgagaattatcagaggggtaaaaaaaaaataaaa
ataaaaaaagaagtatgtatggctgcttaaaaaggatgaaatataaattc
atgagatttgcttttattactttttctttttactgtaggtcctccaattt
taaagggcaaacttagactgccattttccatattttgcatattctggaac
acttggaagtgctgctatctgtctgatgttgtggatcattgcacctctcc
atgcaggccctctcttgccctccttgccttggaattctgccataggaaat
gacagctgcactaagggagccttccgctatgaaaggccttttggaaatgc
catatttccatgtcttcaatatttccacattagaactcccatagtaagca
ttcaggcagatatttgtcacaatgttttataagccactttccaggcacta
caatgagagagctaaaactaagccttcatttacccataacacagtcaaga
ggtgatatattacctatactgctaaagggactactaatttacaaatgcat
acataaacttaatgaaaagtatgtatcaacagtttgtaaaatttatagaa
aagcaaaagcaactttttagagaagtgggcatttcaactcccagtgcagt
tttaaggaacttgctttccctgttgaggaaatgctttccgcaatagagaa
cttgggtggaagataataggtacaagtgtccacttccatgctagtttgaa
tgagtggggttactgttgcagtgatcaaacactaggacctaagcacacag
tggagaaaagtcattttgtttaaattccattcaccatcatcatcaagaac
gataggaactcatcagcagatctatagaggagggatgaatgctgagcccg
aacaatgcttctatagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77416534_77417672
seq2: B6Ng01-328P23.b_48_1184

seq1  GAATTCACAGGGTTTAATAGCTGATTATTGTGTTATTATCTTTCAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGTTTAATAGCTGATTATTGTGTTATTATCTTTCAGCATT  50

seq1  ACTTTCCTTCTTGGGCTTTGTCTTTTATAGCATGGGATATGATTGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTCTTGGGCTTTGTCTTTTATAGCATGGGATATGATTGAAATG  100

seq1  CAGTACTTAAATTTCAATCAGAAGGTTTCTATTTTTGGAGATATTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTAAATTTCAATCAGAAGGTTTCTATTTTTGGAGATATTGAAAG  150

seq1  CAAATTTATCTACTATGGTTAAGACAATGATTGTCTCTAGAATATACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATCTACTATGGTTAAGACAATGATTGTCTCTAGAATATACAGG  200

seq1  ATAGCAGATTCTGTACATTGTAAACCAAAATTGCAGGGGACTAGAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATTCTGTACATTGTAAACCAAAATTGCAGGGGACTAGAAGTCT  250

seq1  ACGGGTGGTAAACAGAGATGGATGACATCATTTTAGACATAGAAATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGGTAAACAGAGATGGATGACATCATTTTAGACATAGAAATTTTG  300

seq1  TTTTCCCAATCACTGGAAAATATGTTTTCCCCTATATACTTCCTCCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAATCACTGGAAAATATGTTTTCCCCTATATACTTCCTCCTTAT  350

seq1  TGGATTACTACTAACTATATTAATGAGTAGTGAGAAATGGAGGGTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACTACTAACTATATTAATGAGTAGTGAGAAATGGAGGGTTCACC  400

seq1  AGAGGAATGCATTTTGATAAAAATAGCATAGTTTCCCAATCTATAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGCATTTTGATAAAAATAGCATAGTTTCCCAATCTATAAGAAA  450

seq1  TACTAGTCTTACATGAGAGTTTGGACCCAAAAGGACTATTCACAGATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTCTTACATGAGAGTTTGGACCCAAAAGGACTATTCACAGATCAC  500

seq1  AAAGTTCCAAATGACACCTGGTCCCTACACACTGTAGTGAGCATGTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCAAATGACACCTGGTCCCTACACACTGTAGTGAGCATGTATTC  550

seq1  CTTTCTACTATCTCCACACAGGACAGAGGAGATGCAAAGTTTATCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTATCTCCACACAGGACAGAGGAGATGCAAAGTTTATCATAAA  600

seq1  ACAAAAGAGAAGTAATTCTTATTAAAGAAAGGCAACATGTAAAACTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAGAAGTAATTCTTATTAAAGAAAGGCAACATGTAAAACTCAAA  650

seq1  TTTATAACGATGAAGGACAATTAGCTGTGGTGAGGCATTCACTTTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACGATGAAGGACAATTAGCTGTGGTGAGGCATTCACTTTCAGTA  700

seq1  TAATAAATGAGGGTAACACATACAGACTAGAGATCTTTCTGAAATAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGAGGGTAACACATACAGACTAGAGATCTTTCTGAAATAACCT  750

seq1  GCAAAAGCTATAACCCATATGGAAAGAAATCATTCTAAGAAGGAG-AAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAAAAGCTATAACCCATATGGAAAGAAATCATTCTAAGAAGGAGAAAGG  800

seq1  AGAGTATGAAATATGAAGTCAAAAAAATTTAAGTTATTGCTAAAATTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGAAATATGAAGTCAAAAAAATTTAAGTTATTGCTAAAATTTTA  850

seq1  AGATAAAGTTATGCTAACACAATCTGTCTTCTAAATCATCATGGACTGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTTATGCTAACACAATCTGTCTTCTAAATCATCATGGACTGAG  900

seq1  GGGTGTTCTGAGTAACTTGCATTAGAAGTGTAGCTTATAAAATGTAGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTGAGTAACTTGCATTAGAAGTGTAGCTTATAAAATGTAGTGC  950

seq1  ATTATGAGGTATTGCAGCATTAGCTCCTGTGTAGTATGTGTGCTTACTAT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTATGAGGTATTGCAGCATTAGCTCCTGTGTAGTATGTGTGC-TACTAT  999

seq1  ATGAATGGATACTGTTCAAAATGCACTGTTTGTAGCTTAACTCATTTAGT  1049
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ATGAATGGATACTGTTC-AAATGCACTGTTTGTAGC-TAACTCATTTAGT  1047

seq1  TCTAAACAAAATAACTGTG--AGGTGATTTGTAATACTATTCTTTATTTT  1097
      ||||||| |||||||||||   |||||||||| ||||||| |||||||||
seq2  TCTAAAC-AAATAACTGTGGAGGGTGATTTGT-ATACTATCCTTTATTTT  1095

seq1  AAAATGAGAGTATGAAGCAAAAAATCTCTAATACTCT-GACTC  1139
      |||||||||||||||||| ||||||||||||| |||| |||||
seq2  AAAATGAGAGTATGAAGCCAAAAATCTCTAAT-CTCTGGACTC  1137


seq1: chr4_77534543_77535681
seq2: B6Ng01-328P23.g_66_1183 (reverse)

seq1  AGCTAATAGAAAGCATTGCTCCGCGCCCTCAGCA-TCATCCCCTCTCTAT  49
      |||| |||| |||||||| |   ||  ||||||| |||||||  ||||||
seq2  AGCT-ATAG-AAGCATTGTT---CGGGCTCAGCATTCATCCCTCCTCTAT  45

seq1  AGATTCCTGCCTTGGATGAGTTCCTATCGTTCTTTGATGATGAATGGTGA  99
      ||||  ||||    |||||||||||||||||| ||||||||| |||||| 
seq2  AGAT--CTGC---TGATGAGTTCCTATCGTTC-TTGATGATG-ATGGTG-  87

seq1  AATGGAATTTTAAACAAAATGAACTTTTTCCTCCACCTGTTGTTGCTTTA  149
      ||||||| ||||||||||||| ||||||  ||||| ||||   ||| |||
seq2  AATGGAA-TTTAAACAAAATG-ACTTTT--CTCCA-CTGT--GTGC-TTA  129

seq1  GGTCCTAGTGTTTGATCACTGCAACAGTAACCCCAACTCATTCAAACTAG  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTCCTAGTGTTTGATCACTGCAACAGTAACCCC-ACTCATTCAAACTAG  178

seq1  CATGGAAGTGGACACTTGTACCTATTATCTTTCCACCAAGTTCTCTATTG  249
      ||||||||||||||||||||||||||||||| |  |||||||||||||||
seq2  CATGGAAGTGGACACTTGTACCTATTATCTTCCACCCAAGTTCTCTATTG  228

seq1  CGGAAAGCATTTCCTCAACAGGGAAAGCAAGTTCCTTAAAACTGCACTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGCATTTCCTCAACAGGGAAAGCAAGTTCCTTAAAACTGCACTGG  278

seq1  GAGTTGAAATGCCCACTTCTCTAAAAAGTTGCTTTTGCTTTTCTATAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAATGCCCACTTCTCTAAAAAGTTGCTTTTGCTTTTCTATAAAT  328

seq1  TTTACAAACTGTTGATACATACTTTTCATTAAGTTTATGTATGCATTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACTGTTGATACATACTTTTCATTAAGTTTATGTATGCATTTGT  378

seq1  AAATTAGTAGTCCCTTTAGCAGTATAGGTAATATATCACCTCTTGACTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAGTCCCTTTAGCAGTATAGGTAATATATCACCTCTTGACTGT  428

seq1  GTTATGGGTAAATGAAGGCTTAGTTTTAGCTCTCTCATTGTAGTGCCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGGTAAATGAAGGCTTAGTTTTAGCTCTCTCATTGTAGTGCCTGG  478

seq1  AAAGTGGCTTATAAAACATTGTGACAAATATCTGCCTGAATGCTTACTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCTTATAAAACATTGTGACAAATATCTGCCTGAATGCTTACTAT  528

seq1  GGGAGTTCTAATGTGGAAATATTGAAGACATGGAAATATGGCATTTCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCTAATGTGGAAATATTGAAGACATGGAAATATGGCATTTCCAA  578

seq1  AAGGCCTTTCATAGCGGAAGGCTCCCTTAGTGCAGCTGTCATTTCCTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTTCATAGCGGAAGGCTCCCTTAGTGCAGCTGTCATTTCCTATG  628

seq1  GCAGAATTCCAAGGCAAGGAGGGCAAGAGAGGGCCTGCATGGAGAGGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTCCAAGGCAAGGAGGGCAAGAGAGGGCCTGCATGGAGAGGTGC  678

seq1  AATGATCCACAACATCAGACAGATAGCAGCACTTCCAAGTGTTCCAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCCACAACATCAGACAGATAGCAGCACTTCCAAGTGTTCCAGAAT  728

seq1  ATGCAAAATATGGAAAATGGCAGTCTAAGTTTGCCCTTTAAAATTGGAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATATGGAAAATGGCAGTCTAAGTTTGCCCTTTAAAATTGGAGG  778

seq1  ACCTACAGTAAAAAGAAAAAGTAATAAAAGCAAATCTCATGAATTTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGTAAAAAGAAAAAGTAATAAAAGCAAATCTCATGAATTTATAT  828

seq1  TTCATCCTTTTTAAGCAGCCATACATACTTCTTTTTTTATTTTTATTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTTTTAAGCAGCCATACATACTTCTTTTTTTATTTTTATTTTT  878

seq1  TTTTTACCCCTCTGATAATTCTCAATAGACTGGTAGCCAGGGAAATGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCCCTCTGATAATTCTCAATAGACTGGTAGCCAGGGAAATGAAG  928

seq1  TAACTGTTCACGCTCTTAAATATGTATAAGTTTGTATCTTCCAAAACCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTCACGCTCTTAAATATGTATAAGTTTGTATCTTCCAAAACCTT  978

seq1  AAACTTAATAGCAGGTTGCCGGTTCTAATATTCACACAGTGTGGAACAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAATAGCAGGTTGCCGGTTCTAATATTCACACAGTGTGGAACAGC  1028

seq1  CACTGCTAATGAGTGAGGCCCATTTGCCAAGTTCGAGTTCAAGGATTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTAATGAGTGAGGCCCATTTGCCAAGTTCGAGTTCAAGGATTCCA  1078

seq1  ATTATATTACAGATGCAGTGCTTGCCAATGCCAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTACAGATGCAGTGCTTGCCAATGCCAAGAATTC  1118


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