BAC Information

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BAC

Clone NameB6Ng01-329I16
Chromosome4 (Build37)
Map Location 145,293,228 - 145,294,118
singlet/doubletsinglet
Overlap geneLOC100041379
Upstream geneLOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC666349
Downstream geneLOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I16.bB6Ng01-329I16.g
ACCGA116477GA116478
length1,2481,109
definitionB6Ng01-329I16.b B6Ng01-329I16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctacactcagcaaagatggaatctcctcaatatggttgggctcc
attgacttcaacattgacaacagctgtgagccagattttctagaagctat
gctttcttccttgtttttgtttttttctttcttctttcactgaggtactg
gggggaggagagggtgtgagtggagggatgaatactaatttcgagttttc
gggtaaagcattttttacattcactacatttataaggtttctctccttta
tgaattctcggatgaatattaagataagatttttggggaaagcacttatc
acattcatgacatttgtaaggtttctctcctgaatgaattttctgatgaa
ttctcagattgcctttttcagtaaagcatttgtcacattcactgcatttg
taaggtttctctcctttatgaattttctgatgccttctcagactgccttt
gtcagtaaagcatttctcacattcactacatttgtaaggtttctctcttg
tatgaattttctgatgccttctcagattgcctttttcagtaaagcatttg
tcacattcactgcatttgtaaggtttctctcctgtatgaattctctgatg
aatactaagataggattttcgggtaaagcatttctcacattcgcatttgt
aagggttctctcctttatgaattctcggatgaatactaagataggatttt
tggggaaagcacttgtcacattcatgacatttgtaaggtttctctcctga
atgaattttctgatgaattctcagattgcctttttcagtaaagcatttgt
cacattcactgcatttgtaagtttctctcctttatgaattttctgatgcc
ttctcagactgccctttgtcagtatagcatttctcacattcactacattt
tgtaaggtttctctcctgtatgaattttctgatgccttctcagactgcct
tttgtcagtaaagcatttctcacattcactacatttgtaaggtttctctc
ctgtatgaaattttctgatgcctttctcagaattgcgtttgtccagtaaa
ggcatttgtccacattcactacatttgtaagttttcttctccttaatgat
tacctctgatgaatttacttagaactgggattttttgatatcaggcaatt
gcttatcacttccaccattgattgttacggttttccttcctgtaagtgaa
atctctctgcgatgatactccactaagagactcgtgatattatttcaa
gaattcttaagagctagatagtgtcctccactaataaaggggacgcttga
gataatcaaatgtcctttttgtcccgcgtcctagaagatgtggataccac
acacctggctgagtggtggaagtcttaaacggcttggccggagggaatac
tgcgatttctatcgtgaccctatgatgagccataagggattgagagttgg
gggaggaaagttggaatttcccacaaacttagtctgagaatgcatcagag
aattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaatg
ctttactaataaaggcagactgagaattaatcagataatttatacattta
aaaaaacccttacaagtattttgtatgtgataaatgcagtacccacaaca
tcagtctgacaaatcaacagatatttcaaacagtagagcaacattataaa
tgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaattcac
tggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaa
tcctttattttggcctatctcttagaatgtaatagataatttatacagtc
aagaatcttaacaaatataatatatgctgaaatatctttgacttcatttc
agtgcagaaaaaatatgtaaaaaaatttttttatgggaaaaatagttctc
ctggggaaatgtggcatatgttttacacgggtaatattcttttcaacagt
cagtgctctaaactagagaattattatgaatctgaaaacttttgaaaacc
ttcatgcaatgttcaaatcttagataatgtcaactattatgctggcagta
actctgaatatatgatagtgaagaaacattttcattaaacttttacttgt
tcaccctcaaatattatatgatgaagtcaggtgtgaaagccagaagaata
tgatgttgtgccacaattcatgggagatagaaatgatccattccaaaagg
aaactaaattaggagtggtacttatcgcttcaaattgtctaataaaactg
ggcagcaattttgtatatttattctatgaggaaatttgacacagattgta
ctgatagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145293228_145294118
seq2: B6Ng01-329I16.g_281_1173

seq1  TTTCCCACAAACTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACAAACTTAGTCTGAGAATGCATCAGAGAATTCATACAGTAGAG  50

seq1  AAAACTTACAAAAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTACAAAAATGCAGTGAATGTGATAAATGCTTTACTAATAAAGGC  100

seq1  AGACTGAGAATTAATCAGATAATTTATACATTTAAAAAAACCCTTACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGAATTAATCAGATAATTTATACATTTAAAAAAACCCTTACAAG  150

seq1  TATTTTGTATGTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTATGTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCA  200

seq1  ACAGATATTTCAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTTCAAACAGTAGAGCAACATTATAAATGAAATGAATGAGATA  250

seq1  GTCCTTTAACAAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTAACAAGAAATATCATCTTAAAATTCACTGGAGAATTCTTCCAA  300

seq1  AAGGGAAACTTTTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAACTTTTCAAATACATTGACGGTTTGAATCCTTTATTTTGGCCT  350

seq1  ATCTCTTAGAATGTAATAGATAATTTATACAGTCAAGAATCTTAACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAGAATGTAATAGATAATTTATACAGTCAAGAATCTTAACAAAT  400

seq1  ATAATATATGCTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATGCTGAAATATCTTTGACTTCATTTCAGTGCAGAAAAAATAT  450

seq1  GTAAAAAAATTTTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAATTTTTTTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCA  500

seq1  TATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGTGCTCTAAACTAG  550

seq1  AGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAA  600

seq1  ATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTCTGAATATATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTCTGAATATATGAT  650

seq1  AGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTA  700

seq1  TATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCCACAA  750

seq1  TTCAT-GGAGATAGAAATGATCCATTCCAAAAGGAAACTAAATAAAGAGT  799
      ||||| ||||||||||||||||||||||||||||||||||||| | ||||
seq2  TTCATGGGAGATAGAAATGATCCATTCCAAAAGGAAACTAAATTAGGAGT  800

seq1  -GTAC-TATCGCCTTCAAAATGTCTAATAAAACT-GGCAGC-ATTTTGTA  845
       |||| ||||| ||||||| |||||||||||||| |||||| ||||||||
seq2  GGTACTTATCG-CTTCAAATTGTCTAATAAAACTGGGCAGCAATTTTGTA  849

seq1  TATTTAATTCAAATGAGGAAA-TTGACACAGATTGTACTTGATAGTG  891
      ||||| ||||  ||||||||| |||||||||||||||| ||||||||
seq2  TATTT-ATTC-TATGAGGAAATTTGACACAGATTGTAC-TGATAGTG  893