BAC Information

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BAC

Clone NameB6Ng01-329J01
Chromosome4 (Build37)
Map Location 147,541,576 - 147,665,823
singlet/doubletdoublet
Overlap genePtchd2
Upstream geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
Downstream geneUbiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329J01.bB6Ng01-329J01.g
ACCGA116495GA116496
length1,154927
definitionB6Ng01-329J01.b B6Ng01-329J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,664,670 - 147,665,823)(147,541,576 - 147,542,488)
sequence
gaattcaacccaagttcccccactaacttgtgtgacctcaagaggacaat
ttaagcaaactcaggtgagtttaccaagctctttcctaactaatttcaca
actgctaaaacacaaccaatcattctattatttatctttctgactgcatc
aaattaaactctgcacaagagactatcgaacagttgcctagaaacacatc
ctaatctgtcataaaacttgctgcaagtgtagagaaggcagagctcctca
ttaatcccatcttgcagatgggtaaattgagtgtcaggtgaagcaagcta
acgagcccaagttcacacagttaatgcaacacacatgcacacaaaccaac
cccagatttccccaaagtcacagtgtttgcagattaaaaaaaaaaaaaat
gaactacttccaaaggtatttattcccttccaccatgctgggacaacatg
ttaatgtcccatatttttaaagataaacactcccaaccctccccatatgc
ttaaccctcagctgcttagccatctggtgaagtaacctgatttgtgcaca
atctttctcaccgatggagcaaaaaaacaggagaaactggtaccctggct
ctttttttagtaggagtttgaagaagaccctgatgtttacccaaatccac
agctacgcaatgtgctaagtgctgctttttcatagagatgttcttatctg
gtaaaccttgatggctaatgctgggaggcaggtactttcacaggctccat
tttataaataagaggggaggtggggcctcagcaaggggaagtgacttcct
tccccaagggcacaccgcagcttgtaaggagtggactgggaggcttagct
ctgaggtcctgcttgtgcatagctgcagaccagacagaggagcattaaag
ggaagagagccggggacaaagtggccctttatggctctcatccctttcaa
aaggagacttttcatttagtcaggaagacagaggtttcgagaaaatagcc
cctggggcactaagaggcattaaatcagaccaggaaatacttctgggcag
agggaactacagaggcagaggagacattggggtacctacatctctgccaa
cctccacagcctggccaatcacaggcactggagtcacctctgggagctct
ggag
gaattctaggtggttgtgagcctgacatagtgctgggatttgaatgtggc
tcctctgggagaacagcaagtgctcttaacctccacgccatctccactcc
aaactccccagctcccccgttcaccccagtcctttctaaggggactccga
gtctgaggggagggcaaggtcccacccaccttaattgctaatcataagag
gagcgactggtggcctcgggcctagcgtaatggaagggagcataaactcg
tgagcttgggttgtaatgaatgttaggtaaggtagagctttagggcaaag
gactgcaatatgtgtgtggagcctacctggctcagaagagggagcccaga
gcactgaggctgtcctttcaggccaaaaaaattaaaaaaaaaaaataaaa
gaaagaaaaaggcttctcaagggtcaggaacccacctaagagacccaagg
agttggctgaagtgtggcgtgacagttaaattcagtagttctgggagacc
atctggttgacagagacgtggcggtcaggaggttgtgttgctcagggagg
tgaagtgtgagttcttgggcatcccagtgggtgcttgttgtccactcaga
tgtgaacagggattgtcaccacccttccctaacatgaaacagaataagat
ggcaagtggcacccggaatcaacatagcaaatacagtcagtctgcattgg
ggtactgtgatccacgttcattctttttttttttttttaaggtttattta
tttattatatgtaagtacattgtagctgtcttcagacactcccagaagag
ggagtcagatctcgttacggatggttgttgagcccaccatgttggtttgc
tgaggattttgaactctggaccttgggaagagcagtcgggtggctcttac
ccaactgagaccatcttaccatgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147664670_147665823
seq2: B6Ng01-329J01.b_48_1201 (reverse)

seq1  CTCCAGAAGCTCCCCAGAGGTGACTCCAGTGGCCCTGTGATGGGCCCAGC  50
      |||||| |||| |||||||||||||||||||  |||||||| ||||  ||
seq2  CTCCAG-AGCT-CCCAGAGGTGACTCCAGTG--CCTGTGATTGGCCAGGC  46

seq1  TGT-GAGG-TGGCAGAGAATGTA-GTTCCCCATTGTCCTCTCTGGCTCTG  97
      ||| |||| |||||||| ||||| || ||||| ||||  ||||| |||||
seq2  TGTGGAGGTTGGCAGAG-ATGTAGGTACCCCAATGTCTCCTCTGCCTCTG  95

seq1  TAGTTCCCTCTG-CCAGAAGTATTTCCTGGGTCTGATTTAAATGCCTCTT  146
      |||||||||||| ||||||||||||||| |||||||||| ||||||||||
seq2  TAGTTCCCTCTGCCCAGAAGTATTTCCT-GGTCTGATTT-AATGCCTCTT  143

seq1  AGTG-CCCAGGGGCTA-TTTCTCGAAAACTCTGTCTTCCTGACTAAATGA  194
      |||| ||||||||||| |||||||||| ||||||||||||||||||||||
seq2  AGTGCCCCAGGGGCTATTTTCTCGAAACCTCTGTCTTCCTGACTAAATGA  193

seq1  AAAGTCTTCTTTTGAAAGGGATGGGAGCCATAAAGGGCCACTTTGTCCCC  244
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGTCTCCTTTTGAAAGGGATGAGAGCCATAAAGGGCCACTTTGTCCCC  243

seq1  GGCTCTCTT-CCTTTAATGCTCCTCTGTCTGGTCTGCAGCTATGCACAAG  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTTCCCTTTAATGCTCCTCTGTCTGGTCTGCAGCTATGCACAAG  293

seq1  CAGGACCTCAGAGCTAAGCCTCCCAGTCCACTCCTTACAAGCTGCGGTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTCAGAGCTAAGCCTCCCAGTCCACTCCTTACAAGCTGCGGTGT  343

seq1  GCCCTTGGGGAAGGAAGTCACTTCCCCTTGCTGAGGCCCCACCTCCCCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGGGAAGGAAGTCACTTCCCCTTGCTGAGGCCCCACCTCCCCTC  393

seq1  TTATTTATAAAATGGAGCCTGTGAAAGTACCTGCCTCCCAGCATTAGCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAAATGGAGCCTGTGAAAGTACCTGCCTCCCAGCATTAGCCA  443

seq1  TCAAGGTTTACCAGATAAGAACATCTCTATGAAAAAGCAGCACTTAGCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTACCAGATAAGAACATCTCTATGAAAAAGCAGCACTTAGCAC  493

seq1  ATTGCGTAGCTGTGGATTTGGGTAAACATCAGGGTCTTCTTCAAACTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGTAGCTGTGGATTTGGGTAAACATCAGGGTCTTCTTCAAACTCCT  543

seq1  ACTAAAAAAAGAGCCAGGGTACCAGTTTCTCCTGTTTTTTTGCTCCATCG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAAAGAGCCAGGGTACCAGTTTCTCCTGTTTTTTTGCTCCATCG  593

seq1  GTGAGAAAGATTGTGCACAAATCAGGTTACTTCACCAGATGGCTAAGCAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGATTGTGCACAAATCAGGTTACTTCACCAGATGGCTAAGCAG  643

seq1  CTGAGGGTTAAGCATATGGGGAGGGTTGGGAGTGTTTATCTTTAAAAATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTAAGCATATGGGGAGGGTTGGGAGTGTTTATCTTTAAAAATA  693

seq1  TGGGACATTAACATGTTGTCCCAGCATGGTGGAAGGGAATAAATACCTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATTAACATGTTGTCCCAGCATGGTGGAAGGGAATAAATACCTTT  743

seq1  GGAAGTAGTTCATTTTTTTTTTTTTTAATCTGCAAACACTGTGACTTTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGTTCATTTTTTTTTTTTTTAATCTGCAAACACTGTGACTTTGG  793

seq1  GGAAATCTGGGGTTGGTTTGTGTGCATGTGTGTTGCATTAACTGTGTGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTGGGGTTGGTTTGTGTGCATGTGTGTTGCATTAACTGTGTGAA  843

seq1  CTTGGGCTCGTTAGCTTGCTTCACCTGACACTCAATTTACCCATCTGCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCTCGTTAGCTTGCTTCACCTGACACTCAATTTACCCATCTGCAA  893

seq1  GATGGGATTAATGAGGAGCTCTGCCTTCTCTACACTTGCAGCAAGTTTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATTAATGAGGAGCTCTGCCTTCTCTACACTTGCAGCAAGTTTTA  943

seq1  TGACAGATTAGGATGTGTTTCTAGGCAACTGTTCGATAGTCTCTTGTGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATTAGGATGTGTTTCTAGGCAACTGTTCGATAGTCTCTTGTGCA  993

seq1  GAGTTTAATTTGATGCAGTCAGAAAGATAAATAATAGAATGATTGGTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAATTTGATGCAGTCAGAAAGATAAATAATAGAATGATTGGTTGT  1043

seq1  GTTTTAGCAGTTGTGAAATTAGTTAGGAAAGAGCTTGGTAAACTCACCTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCAGTTGTGAAATTAGTTAGGAAAGAGCTTGGTAAACTCACCTG  1093

seq1  AGTTTGCTTAAATTGTCCTCTTGAGGTCACACAAGTTAGTGGGGGAACTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTAAATTGTCCTCTTGAGGTCACACAAGTTAGTGGGGGAACTT  1143

seq1  GGGTTGAATTC  1154
      |||||||||||
seq2  GGGTTGAATTC  1154

seq1: chr4_147541576_147542488
seq2: B6Ng01-329J01.g_66_991

seq1  GAATTCTAGGTGGTTGTGAGCCTGACATAGTGCTGGGATTTGAATGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTGGTTGTGAGCCTGACATAGTGCTGGGATTTGAATGTGGC  50

seq1  TCCTCTGGGAGAACAGCAAGTGCTCTTAACCTCCACGCCATCTCCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGAGAACAGCAAGTGCTCTTAACCTCCACGCCATCTCCACTCC  100

seq1  AAACTCCCCAGCTCCCCCGTTCACCCCAGTCCTTTCTAAGGGGACTCCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCCAGCTCCCCCGTTCACCCCAGTCCTTTCTAAGGGGACTCCGA  150

seq1  GTCTGAGGGGAGGGCAAGGTCCCACCCACCTTAATTGCTAATCATAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGGGAGGGCAAGGTCCCACCCACCTTAATTGCTAATCATAAGAG  200

seq1  GAGCGACTGGTGGCCTCGGGCCTAGCGTAATGGAAGGGAGCATAAACTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGACTGGTGGCCTCGGGCCTAGCGTAATGGAAGGGAGCATAAACTCG  250

seq1  TGAGCTTGGGTTGTAATGAATGTTAGGTAAGGTAGAGCTTTAGGGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGGGTTGTAATGAATGTTAGGTAAGGTAGAGCTTTAGGGCAAAG  300

seq1  GACTGCAATATGTGTGTGGAGCCTACCTGGCTCAGAAGAGGGAGCCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAATATGTGTGTGGAGCCTACCTGGCTCAGAAGAGGGAGCCCAGA  350

seq1  GCACTGAGGCTGTCCTTTCAGGCCAAAAAAATTAAAAAAAAAAAATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGGCTGTCCTTTCAGGCCAAAAAAATTAAAAAAAAAAAATAAAA  400

seq1  GAAAGAAAAAGGCTTCTCAAGGGTCAGGAACCCACCTAAGAGACCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAGGCTTCTCAAGGGTCAGGAACCCACCTAAGAGACCCAAGG  450

seq1  AGTTGGCTGAAGTGTGGCGTGACAGTTAAATTCAGTAGTTCTGGGAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTGAAGTGTGGCGTGACAGTTAAATTCAGTAGTTCTGGGAGACC  500

seq1  ATCTGGTTGACAGAGACGTGGCGGTCAGGAGGTTGTGTTGCTCAGGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTGACAGAGACGTGGCGGTCAGGAGGTTGTGTTGCTCAGGGAGG  550

seq1  TGAAGTGTGAGTTCTTGGGCATCCCAGTGGGTGCTTGTTGTCCACTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTGAGTTCTTGGGCATCCCAGTGGGTGCTTGTTGTCCACTCAGA  600

seq1  TGTGAACAGGGATTGTCACCACCCTTCCCTAACATGAAACAGAATAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAGGGATTGTCACCACCCTTCCCTAACATGAAACAGAATAAGAT  650

seq1  GGCAAGTGGCACCCGGAATCAACATAGC-AATACAGTCAGTCTGCATTGG  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCAAGTGGCACCCGGAATCAACATAGCAAATACAGTCAGTCTGCATTGG  700

seq1  GGTACTGTGATCCACGTTCATTCTTTTTTTTTTTTTTTAAGGTTTATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGTGATCCACGTTCATTCTTTTTTTTTTTTTTTAAGGTTTATTTA  750

seq1  TTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACT-CCAGAAGAG  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACTCCCAGAAGAG  800

seq1  GGAGTCAGATCTCGTTACGGATGGTTG-TGAG-CCACCATGT--GGTTGC  844
      ||||||||||||||||||||||||||| |||| |||||||||  | ||||
seq2  GGAGTCAGATCTCGTTACGGATGGTTGTTGAGCCCACCATGTTGGTTTGC  850

seq1  TG-GGA-TTTGAACTCTGGACCTT-GGAAGAGCAGTCGGGT-GCTCTTAC  890
      || ||| ||||||||||||||||| |||||||||||||||| ||||||||
seq2  TGAGGATTTTGAACTCTGGACCTTGGGAAGAGCAGTCGGGTGGCTCTTAC  900

seq1  CC-ACTGAG-CCATCTCACCA-GCCC  913
      || |||||| |||||| |||| ||||
seq2  CCAACTGAGACCATCTTACCATGCCC  926