BAC Information

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BAC

Clone NameB6Ng01-329N17
Chromosome4 (Build37)
Map Location 65,641,812 - 65,753,319
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N17.bB6Ng01-329N17.g
ACCGA116703GA116704
length1,1101,109
definitionB6Ng01-329N17.b B6Ng01-329N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,752,212 - 65,753,319)(65,641,812 - 65,642,926)
sequence
gaattcattccaagattttgctactgcaagtagagctgctctttatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
cttcatgtgggtgtatgcttatgtttttcttgggtaaataacaagaaatg
gggtgtcacggtcatgtaatttttacagaagatagaaattatgagcaact
tttccccccaaactagatacataatataaattcttatcagcagtacaaga
tgttttcactttaaacacttatcaaagttgatgatgtcaatgtttgtgga
cctctgagctccctgatattttataatatcacaatgtgatttaatttgca
tttcttctatgactaaagtggctaaggttgtcaacttccttacttgcatt
cagaattttgagataattcttcagaactttaactatcttttattggattt
ttgtgtgtgtgtgtctaagtgataaaatgttatatggaaaagtaaacaat
atggatacaagtcctttataactgtacacatttagatattttcttctctt
tggggcttagatttctatttgcctagttttatcttttattaagcaaaaga
tgtttatgttttgaaagaggccattaattaaaagacataaagaggaagtt
gtggaagggtttagatggaggaagaaaagaaagtgtttttataataatat
tataatcttaaaatgaaagaaataatcaaaaatctaactttttaattttt
ctttctagttaatacaattgctttttaaaaattgttgactaccctaagac
tctttaaaggtttaacacttagatattgatttgtgatctctcttgaggtg
ctatgtgtgattgttaggaatgcagggactgtgttgggtttcttttcaat
tctgcctctaggtctcctttgtagcatgtcaaaaaagaccttccttcaac
attgccaaatgggagctgtgtatatttcctggtctaactgtctggtttgt
gctgttgtagttgttgttttgtcagcggcctgctctttgatgaatagcat
gctgaacctagttcttgtgggctcttggtaattcctgaaagcacacaggc
aaatgtctcc
gaattcaaatcacagtaaactagctctgcagccaattatgaacctcgtcc
tttattaaagtcacgaagccttgtattaccttcctctcttgagttgaaag
acaagacaaagcaggccaaggagagcagaaaatttcagaaaggatacatt
acaaacaaatatgtgttcaaaaatatccacagtgtggcgtatcaataaac
tacagcatcctgatatgtgcgcatttatacttcattttccaggatcagaa
cgaacactcagactttaaataactcagttataaggaacataggagacttg
acaactatcttacttcatctaacaaaatgaggttaatagttcaaattgaa
cttattaaaaagtacattttaacataggtatatttctataatattaatat
ttgtattaattatagttttattcaaatctctctagtgtttgtgtgtgtgt
gtgtgtgttaaattcatgactttgattagaaaagtattctagaagcactc
tgtctccctaaccccacacatcagagtttttcattatttctgagactcct
caaataatgggtgacgatcagagataaaatattaaagacaaaataagcat
attgtaaaaatattcaaaaatgaagtggtttgaaaatttaggttctgata
aaatggtttctaatgaaacagaagatatgtttagccccactcatgccttc
tccttacttctatgacttcatagaatggggtcatttgttcttgcaggtat
cctgtgatggggactcattaccttgcaatgagccccgtttcatattaaaa
aaacattgcaacaactactagcatttgtatgatttattgagccattacta
tgtcttcagtattcagctaagtgcttcatgagcattatttcatttattct
gcacaataatttcaggtgataaatatgctattatccccaattcatagata
tgaaactgatgcgtagagttaggaagtgggcacaaggtcacacagacaac
agcaaaagaagactttaccaaaccaggcttcacttttacacctcagagtc
tacttttgctttctggagatctcaggaactggttctttctccaatgtaat
tattcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65752212_65753319
seq2: B6Ng01-329N17.b_46_1155 (reverse)

seq1  GGAGACATTTGCCCTGTGTGCTTCCAAGATTTACCAAGAGCCCACAAGAA  50
      ||||||||||| ||||||||||| || || ||||||||||||||||||||
seq2  GGAGACATTTG-CCTGTGTGCTTTCAGGAATTACCAAGAGCCCACAAGAA  49

seq1  CCAGG-TCAGCATGCTA-TCACCAAAGAACAGGCCGCAGACAAAACAACA  98
      | ||| ||||||||||| ||| |||||| |||||||| ||||||||||| 
seq2  CTAGGTTCAGCATGCTATTCATCAAAGAGCAGGCCGCTGACAAAACAAC-  98

seq1  AACAACAACAGCAACAAACCAGACAGTAAGACCA-GAAATATACACAGCT  147
      ||| |||||||| |||||||||||||| |||||| |||||||||||||||
seq2  AACTACAACAGC-ACAAACCAGACAGTTAGACCAGGAAATATACACAGCT  147

seq1  ACCATTTGGCAATTGTTGAAGGAAGGTC-TTTTTGACATGCTAC-AAGGA  195
       ||||||||||| ||||||||||||||| ||||||||||||||| |||||
seq2  CCCATTTGGCAA-TGTTGAAGGAAGGTCTTTTTTGACATGCTACAAAGGA  196

seq1  GACCTAGAGGCAGAATCTGAAAGAAA-CCAACACAGTCCCTGCATTCCTA  244
      ||||||||||||||||   ||||||| |||||||||||||||||||||||
seq2  GACCTAGAGGCAGAATTGAAAAGAAACCCAACACAGTCCCTGCATTCCTA  246

seq1  ACAATCACACATAGCACCTCAAGAGAGATCACAAATCAATATCTAAGTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACACATAGCACCTCAAGAGAGATCACAAATCAATATCTAAGTGT  296

seq1  TAAACCTTTAAAGAGTCTTAGGGTAGTCAACAATTTTTAAAAAGCAATTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTTAAAGAGTCTTAGGGTAGTCAACAATTTTTAAAAAGCAATTG  346

seq1  TATTAACTAGAAAGAAAAATTAAAAAGTTAGATTTTTGATTATTTCTTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTAGAAAGAAAAATTAAAAAGTTAGATTTTTGATTATTTCTTTC  396

seq1  ATTTTAAGATTATAATATTATTATAAAAACACTTTCTTTTCTTCCTCCAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGATTATAATATTATTATAAAAACACTTTCTTTTCTTCCTCCAT  446

seq1  CTAAACCCTTCCACAACTTCCTCTTTATGTCTTTTAATTAATGGCCTCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCTTCCACAACTTCCTCTTTATGTCTTTTAATTAATGGCCTCTT  496

seq1  TCAAAACATAAACATCTTTTGCTTAATAAAAGATAAAACTAGGCAAATAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATAAACATCTTTTGCTTAATAAAAGATAAAACTAGGCAAATAG  546

seq1  AAATCTAAGCCCCAAAGAGAAGAAAATATCTAAATGTGTACAGTTATAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAAGCCCCAAAGAGAAGAAAATATCTAAATGTGTACAGTTATAAA  596

seq1  GGACTTGTATCCATATTGTTTACTTTTCCATATAACATTTTATCACTTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGTATCCATATTGTTTACTTTTCCATATAACATTTTATCACTTAG  646

seq1  ACACACACACACAAAAATCCAATAAAAGATAGTTAAAGTTCTGAAGAATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAAAAATCCAATAAAAGATAGTTAAAGTTCTGAAGAATT  696

seq1  ATCTCAAAATTCTGAATGCAAGTAAGGAAGTTGACAACCTTAGCCACTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAATTCTGAATGCAAGTAAGGAAGTTGACAACCTTAGCCACTTT  746

seq1  AGTCATAGAAGAAATGCAAATTAAATCACATTGTGATATTATAAAATATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGAAGAAATGCAAATTAAATCACATTGTGATATTATAAAATATC  796

seq1  AGGGAGCTCAGAGGTCCACAAACATTGACATCATCAACTTTGATAAGTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTCAGAGGTCCACAAACATTGACATCATCAACTTTGATAAGTGT  846

seq1  TTAAAGTGAAAACATCTTGTACTGCTGATAAGAATTTATATTATGTATCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGAAAACATCTTGTACTGCTGATAAGAATTTATATTATGTATCT  896

seq1  AGTTTGGGGGGAAAAGTTGCTCATAATTTCTATCTTCTGTAAAAATTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGGGGAAAAGTTGCTCATAATTTCTATCTTCTGTAAAAATTACA  946

seq1  TGACCGTGACACCCCATTTCTTGTTATTTACCCAAGAAAAACATAAGCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGTGACACCCCATTTCTTGTTATTTACCCAAGAAAAACATAAGCAT  996

seq1  ACACCCACATGAAGATATATATATATATATATATATATATATATATATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACATGAAGATATATATATATATATATATATATATATATATATAT  1046

seq1  ATATATATATATATATATATAAAGAGCAGCTCTACTTGCAGTAGCAAAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATAAAGAGCAGCTCTACTTGCAGTAGCAAAAT  1096

seq1  CTTGGAATGAATTC  1108
      ||||||||||||||
seq2  CTTGGAATGAATTC  1110

seq1: chr4_65641812_65642926
seq2: B6Ng01-329N17.g_68_1176

seq1  GAATTCAAATCACAGTAAACTAGCTCTGCAGCCAATTATGAACCTCGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCACAGTAAACTAGCTCTGCAGCCAATTATGAACCTCGTCC  50

seq1  TTTATTAAAGTCACGAAGCCTTGTATTACCTTCCTCTCTTGAGTTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAGTCACGAAGCCTTGTATTACCTTCCTCTCTTGAGTTGAAAG  100

seq1  ACAAGACAAAGCAGGCCAAGGAGAGCAGAAAATTTCAGAAAGGATACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAAGCAGGCCAAGGAGAGCAGAAAATTTCAGAAAGGATACATT  150

seq1  ACAAACAAATATGTGTTCAAAAATATCCACAGTGTGGCGTATCAATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAATATGTGTTCAAAAATATCCACAGTGTGGCGTATCAATAAAC  200

seq1  TACAGCATCCTGATATGTGCGCATTTATACTTCATTTTCCAGGATCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATCCTGATATGTGCGCATTTATACTTCATTTTCCAGGATCAGAA  250

seq1  CGAACACTCAGACTTTAAATAACTCAGTTATAAGGAACATAGGAGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACTCAGACTTTAAATAACTCAGTTATAAGGAACATAGGAGACTTG  300

seq1  ACAACTATCTTACTTCATCTAACAAAATGAGGTTAATAGTTCAAATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATCTTACTTCATCTAACAAAATGAGGTTAATAGTTCAAATTGAA  350

seq1  CTTATTAAAAAGTACATTTTAACATAGGTATATTTCTATAATATTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAAAGTACATTTTAACATAGGTATATTTCTATAATATTAATAT  400

seq1  TTGTATTAATTATAGTTTTATTCAAATCTCTCTAGTGTTTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAATTATAGTTTTATTCAAATCTCTCTAGTGTTTGTGTGTGTGT  450

seq1  GTGTGTGTTAAATTCATGACTTTGATTAGAAAAGTATTCTAGAAGCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTAAATTCATGACTTTGATTAGAAAAGTATTCTAGAAGCACTC  500

seq1  TGTCTCCCTAACCCCACACATCAGAGTTTTTCATTATTTCTGAGACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTAACCCCACACATCAGAGTTTTTCATTATTTCTGAGACTCCT  550

seq1  CAAATAATGGGTGACGATCAGAGATAAAATATTAAAGACAAAATAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGGGTGACGATCAGAGATAAAATATTAAAGACAAAATAAGCAT  600

seq1  ATTGTAAAAATATTCAAAAATGAAGTGGTTTGAAAATTTAGGTTCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAAATATTCAAAAATGAAGTGGTTTGAAAATTTAGGTTCTGATA  650

seq1  AAATGGTTTCTAATGAAACAGAAGATATGTTTAGCCCCACTCATGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTCTAATGAAACAGAAGATATGTTTAGCCCCACTCATGCCTTC  700

seq1  TCCTTACTTCTATGACTTCATAGAATGGGGTCATTTGTTCTTGCAGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTTCTATGACTTCATAGAATGGGGTCATTTGTTCTTGCAGGTAT  750

seq1  CCTGTGATGGGGACTCATTACCTTGCAATGAGCCCCGTTTCATATTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATGGGGACTCATTACCTTGCAATGAGCCCCGTTTCATATTAAAA  800

seq1  AAACATTGCAACAACTACTAGCATTTGTATGATTTATTGAGCCATTACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGCAACAACTACTAGCATTTGTATGATTTATTGAGCCATTACTA  850

seq1  TGTCTTCAGTATTCAGCTAAGTGCTTCATGAGCATTATTTCATTTATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGTATTCAGCTAAGTGCTTCATGAGCATTATTTCATTTATTCT  900

seq1  GCACAATAATTTCAGGTGATAAATATGCTATTATCCCCAATTCATAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCACAATAATTTCAGGTGATAAATATGCTATTATCCCCAATTCATAGAT-  949

seq1  ATGAAACTGATGCGTAAGAAGTTTAGGAAGTGGGCACAAGGTCACACAGA  1000
      ||||||||||||||| |||   ||||||||||||||||||||||||||||
seq2  ATGAAACTGATGCGT-AGA--GTTAGGAAGTGGGCACAAGGTCACACAGA  996

seq1  CAACAGCAAAAGAAGACTTTACCAAACCAAGCCTCCACTTTTTACA-CTC  1049
      |||||||||||||||||||||||||||| || || ||| ||||||| |||
seq2  CAACAGCAAAAGAAGACTTTACCAAACC-AGGCTTCAC-TTTTACACCTC  1044

seq1  AGAGTTCTACTTTTGCTTTCT-GAGATCTCCAAGAACTGGTCCTTTCTCC  1098
      |||| |||||||||||||||| ||||||| || |||||||| ||||||||
seq2  AGAG-TCTACTTTTGCTTTCTGGAGATCT-CAGGAACTGGTTCTTTCTCC  1092

seq1  ATTGTTAATTA-TCAGAG  1115
      | || |||||| ||||||
seq2  AATG-TAATTATTCAGAG  1109