BAC Information

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BAC

Clone NameB6Ng01-330A04
Chromosome4 (Build37)2 (Build37)
Map Location 26,126,780 - 26,127,98071,293,316 - 71,293,850
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780, Hn1-ps1
Downstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330A04.bB6Ng01-330A04.g
ACCGA116810GA116811
length1,180529
definitionB6Ng01-330A04.b B6Ng01-330A04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,126,780 - 26,127,980)(71,293,316 - 71,293,850)
sequence
gaattcttgatctttgacaagggcgctaaaaccatccatcaggaaaaaga
cagcattttcaacaaatggtgttggcacaactgacggttatcatggggaa
gaatgtgaattgatccattcttatctccttgtacaaagctcaagtctaac
tggatcaaggaactccacataaaaccagagacactaaattttatagagga
gaaagtgggaaaagcctctaagatatgggcacaggggggaaattcctgac
cagaataacaatggcttttactgtgagactgagaattgacaaatgggacc
tcataaaattgcaaatcctctgcaaggcaaaagacactgtcaataagaaa
aaaatgctaccaacagattgggaacggatatttacaaatcctaaatcaga
taggggactaatatgcaatatctataaagaactcaagaaaatggactcca
taaaatcaaataaccttattaagaaatggggtacagagctgtaatctgat
ttttaatctatttttgaaagatctggtggtcaaaattgatttaacaaatg
acatgtcttagcctaagctcatttatgtagctaatttctcccaattaaaa
cattttctcctggagtgagtagagtcctaaaattctgagggcccagaaag
ttacaagataatttaggttataaaagtgtgaatagtgttgatgaaaggaa
aatttctaatgcagcagagtgcaagttgggtaaagaaatcaagagattca
acctctgtgatccagcatccacaatagggtgggtttttcagatacaagta
cctctgaatcacctacattctttgaataacctcatgaactcattgccccc
tcccaagctatacttggtggaatcatttccttagttatcaacagcgttct
gtcacagagtaatacaggttctccaaatgattgagaaacagtataacaac
atctctcacttcatttctctgaaagatacagtctctgttacttgtttaga
cgttctgaatttgaacagtaagttcgatctgcagtagtctaggaggtcct
tgagctttggtttgtgtcatattcctgatgggaggctctttttacctata
tatgctagattcttttctgaaatttggcaacatatgttatcaaatgaaga
tgtccatgtgaatttccttggttatagaaa

ctggtccttctgccatttccaagcatgtgctgccacacccagtaaacata
acaactttttaaaaaaagatttattttttatttatgtgcatgcatgtaat
ccatcttgagtttacgtgcaccacatatgtgcaggtacctgaggaggcca
gagggagtcatatcccctggaactgaaattataggcagttgtgagccata
agatacaggttatgagaatccaactggccagatcctctggaagagcagta
agtgcttttaaccacggaaccatctctctagccccgtaacggctatttta
aacacttgaaatcagagtttccccacagtctgtcttatttgatgatggtg
gtgatgatggtggtgataattgattggctacactttcctgcttcacagct
catgtaacataattatatatgtaacacaatgactggtatcttttggagat
tatgttgattttttttctttaaaatatgttgagtattaggcaggtagttt
ggttctcccacacttggtgttatctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26126780_26127980
seq2: B6Ng01-330A04.b_46_1225

seq1  GAATTCTTGATCTTTGACAAGGGCGCTAAAACCATCCATCAGGAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCTTTGACAAGGGCGCTAAAACCATCCATCAGGAAAAAGA  50

seq1  CAGCATTTTCAACAAATGGTGTTGGCACAACTGACGGTTATCATGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTTCAACAAATGGTGTTGGCACAACTGACGGTTATCATGGGGAA  100

seq1  GAATGTGAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGAATTGATCCATTCTTATCTCCTTGTACAAAGCTCAAGTCTAAC  150

seq1  TGGATCAAGGAACTCCACATAAAACCAGAGACACTAAATTTTATAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAAGGAACTCCACATAAAACCAGAGACACTAAATTTTATAGAGGA  200

seq1  GAAAGTGGGAAAAGCCTCTAAGATATGGGCACAGGGGGGAAATTCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGAAAAGCCTCTAAGATATGGGCACAGGGGGGAAATTCCTGAC  250

seq1  CAGAATAACAATGGCTTTTACTGTGAGACTGAGAATTGACAAATGGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAACAATGGCTTTTACTGTGAGACTGAGAATTGACAAATGGGACC  300

seq1  TCATAAAATTGCAAATCCTCTGCAAGGCAAAAGACACTGTCAATAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATTGCAAATCCTCTGCAAGGCAAAAGACACTGTCAATAAGAAA  350

seq1  AAAATGCTACCAACAGATTGGGAACGGATATTTACAAATCCTAAATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTACCAACAGATTGGGAACGGATATTTACAAATCCTAAATCAGA  400

seq1  TAGGGGACTAATATGCAATATCTATAAAGAACTCAAGAAAATGGACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATGCAATATCTATAAAGAACTCAAGAAAATGGACTCCA  450

seq1  TAAAATCAAATAACCTTATTAAGAAATGGGGTACAGAGCTGTAATCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAATAACCTTATTAAGAAATGGGGTACAGAGCTGTAATCTGAT  500

seq1  TTTTAATCTATTTTTGAAAGATCTGGTGGTCAAAATTGATTTAACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCTATTTTTGAAAGATCTGGTGGTCAAAATTGATTTAACAAATG  550

seq1  ACATGTCTTAGCCTAAGCTCATTTATGTAGCTAATTTCTCCCAATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTAGCCTAAGCTCATTTATGTAGCTAATTTCTCCCAATTAAAA  600

seq1  CATTTTCTCCTGGAGTGAGTAGAGTCCTAAAATTCTGAGGGCCCAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCCTGGAGTGAGTAGAGTCCTAAAATTCTGAGGGCCCAGAAAG  650

seq1  TTACAAGATAATTTAGGTTATAAAAGTGTGAATAGTGTTGATGAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATAATTTAGGTTATAAAAGTGTGAATAGTGTTGATGAAAGGAA  700

seq1  AATTTCTAATGCAGCAGAGTGCAAGTTGGGTAAAGAAATCAAGAGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAATGCAGCAGAGTGCAAGTTGGGTAAAGAAATCAAGAGATTCA  750

seq1  ACCTCTGTGATCCAGCATCCACAATAGGGTGGGTTTTTCAGATACAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGATCCAGCATCCACAATAGGGTGGGTTTTTCAGATACAAGTA  800

seq1  CCTCTGAATCACCTACATTCTTTGAATAACCTCATGAACTCATTGCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATCACCTACATTCTTTGAATAACCTCATGAACTCATTGCCCCC  850

seq1  TCCCAAGCTATACTTGGTGGAATCATTTCCTTAGTTATCAACAGCGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTATACTTGGTGGAATCATTTCCTTAGTTATCAACAGCGTTCT  900

seq1  GTCACAGAGTAATACAGGTTCTCCAAATGATTGAGAAACAGTATAACAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGTAATACAGGTTCTCCAAATGATTGAGAAACAGTATAACAAC  950

seq1  ATCTCTCACTTCATTTCTCTGAAAGATACAGTCTCTGTTACTTGTTTTAG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCTCTCACTTCATTTCTCTGAAAGATACAGTCTCTGTTACTTG-TTTAG  999

seq1  AACGTTCTGAATTTGAACAGTAAGTTCGATCTGCAGTAGTTCTAGGAAGG  1050
       |||||||||||||||||||||||||||||||||||||| |||||||  |
seq2  -ACGTTCTGAATTTGAACAGTAAGTTCGATCTGCAGTAG-TCTAGGA--G  1045

seq1  GTCCTTGAGCTTTGGTTTGTGTCATATCCTGGATGGGAGGCTCTTTTACC  1100
      ||||||||||||||||||||||||||| |  ||||||||||||||||  |
seq2  GTCCTTGAGCTTTGGTTTGTGTCATATTCCTGATGGGAGGCTCTTTTTAC  1095

seq1  CTATAAATAATTGCTAGGGTTCTTTTTCCTGAAAAATTTGCCAACATATG  1150
      ||||| |    ||||| | |||||||  |||  ||||||| |||||||||
seq2  CTATATA----TGCTA-GATTCTTTT--CTG--AAATTTGGCAACATATG  1136

seq1  TATTCAAAATGAAGAATATTTCCATGTGAATTTTCTTTGTTTTTATAGAA  1200
      |  || ||||||||   || ||||||||||||| ||| |   ||||||||
seq2  TTATC-AAATGAAG---ATGTCCATGTGAATTTCCTTGG---TTATAGAA  1179

seq1  A  1201
      |
seq2  A  1180


seq1: chr2_71293316_71293850
seq2: B6Ng01-330A04.g_67_601

seq1  GAATTCCTGGTCCTTCTGCCATTTCCAAGCATGTGCTGCCACACCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCCTTCTGCCATTTCCAAGCATGTGCTGCCACACCCAGTA  50

seq1  AACATAACAACTTTTTAAAAAAAGATTTATTTTTTATTTATGTGCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACAACTTTTTAAAAAAAGATTTATTTTTTATTTATGTGCATGCA  100

seq1  TGTAATCCATCTTGAGTTTACGTGCACCACATATGTGCAGGTACCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCCATCTTGAGTTTACGTGCACCACATATGTGCAGGTACCTGAGG  150

seq1  AGGCCAGAGGGAGTCATATCCCCTGGAACTGAAATTATAGGCAGTTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGGGAGTCATATCCCCTGGAACTGAAATTATAGGCAGTTGTGA  200

seq1  GCCATAAGATACAGGTTATGAGAATCCAACTGGCCAGATCCTCTGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGATACAGGTTATGAGAATCCAACTGGCCAGATCCTCTGGAAGA  250

seq1  GCAGTAAGTGCTTTTAACCACGGAACCATCTCTCTAGCCCCGTAACGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGTGCTTTTAACCACGGAACCATCTCTCTAGCCCCGTAACGGCT  300

seq1  ATTTTAAACACTTGAAATCAGAGTTTCCCCACAGTCTGTCTTATTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACACTTGAAATCAGAGTTTCCCCACAGTCTGTCTTATTTGATG  350

seq1  ATGGTGGTGATGATGGTGGTGATAATTGATTGGCTACACTTTCCTGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGATGATGGTGGTGATAATTGATTGGCTACACTTTCCTGCTTC  400

seq1  ACAGCTCATGTAACATAATTATATATGTAACACAATGACTGGTATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATGTAACATAATTATATATGTAACACAATGACTGGTATCTTTT  450

seq1  GGAGATTATGTTGATTTTTTTTCTTTAAAATATGTTGAGTATTAGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTATGTTGATTTTTTTTCTTTAAAATATGTTGAGTATTAGGCAGG  500

seq1  TAGTTTGGTTCTCCCACACTTGGTGTTATCTTTGT  535
      |||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGTTCTCCCACACTTGGTGTTATCTTTGT  535


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