BAC Information

Click to search

BAC

Clone NameB6Ng01-330M05
Chromosome4 (Build37)
Map Location 92,963,273 - 92,964,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125
Downstream geneTusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330M05.bB6Ng01-330M05.g
ACCGA117326GA117327
length1,1351,233
definitionB6Ng01-330M05.b B6Ng01-330M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgagctttccctattaatttatgcattaagacatatttgaac
agctgctgtgcatcaaacagtgtgctggaggccaaggttacaaacttaaa
tgtctagtgtatgaagaagagaatgagacagagccatagataggcgagca
tgtttatgtgtgcagagagaatgagcctagaagaaaacatgattcgactt
gggatttgaatgatggagaactagacacgtatagttctataccagaacac
gtatccccaggtttgaaagatgagaaaaagagttagcagagtcaacaaag
ttggcaccagagaagctatcataaatgttagaaattaatgctagagtatt
tgtgcctgccttcatattctcaccctgtattattcatacaaagggagaca
agtatgggttcgaaatgctctcaatagtttctaatggttggtctccatgt
ccattgttctgtatcacagtggactggctgtgaatcatcagggttacgtt
ttcctgtatacactaatcatgttactcaggaactgtctagtcttaggggt
tgtcccaattctacactgtacaatcactgaggtcactgttttagactcag
actttgatgcctcactttcctcatcacccttattaaggtgctatgttaaa
tttttttctttacaatttttttctaagttaaatatttttggggtcacaat
attctacacacaagtgaatgcaagttaatggtgctaatggagaaatggct
tttgttttgaaaattgagtatgtgtgaattttacagtgagaagacattct
ccacccatatgaaagagttttaatttcttcttgttgtattatgtcattca
tataatactctttgcttctgggttaaaaaaattagagcaaaatcaaaatg
ttatcccaaatgttactgtcaaagaaggagagattaaaacattcctaaca
tgttcacgttccacagtgatcagcttatattgatcatcatagcattgact
tgaaatgatgtatactcatgttacaggactgaaatatctgtaaataaaat
tggaaatgttataacattatatattttataacattataacatcagaaagt
atgcaatatattctaataataatgcatactatgat

gaattccagagatcacttactatgcaagtttgactaataatctcttgagt
gagatttaggtttgctgttttaaaatttaaagatgatgtgaattattata
ttaactcatttccatatgtcagcaatttctcagcatttataccttcgatt
atctatttgctttgcaattatatattccagttgatattactatgaaaagg
aagctcgtatataatatttcagatcttgtgtattttaaatagtaaaacaa
aggcaaacactcctcgctttttctcagtttgataaatatgctatcagtca
ccacagtttggttaaatagtgcagatctgcaaatagtgactttatttcta
ctaatactttgttcaaactcgacatatataaagtacttcacactgctgaa
tattctgtcctcaaatcatatcagtaaccagtgcttcatgattatgacaa
atcccaagtttttaaaagtctgtcagtgatttgtcatgatatatctgtcc
tttggtttgtgcatagataaatcagcatataatgtgtcatctccttatca
ttaaatagcaagcctatgcgacattttataaaaatagatcttcacaagag
aaaataaatacagaatttgaattaaatgggcaaaggtagtcaccacttgg
tgtccggtattgcatctattctgtaagcatacaaccacagaaatgatgac
aaactttattgacagaaatgaggaatttaggtatgattgaaagggtgata
caaaagaggaagtaatttaagccaaaatgtttaaaaaaatatggaggatg
gtgttttagaaattacaggaaaaaaatcttactttgtataaaaacatata
acaagagatgttaaaaggtacaggaagaaggaacctttagaaactcctgg
tggcactggaaactagtgcagccactatggaaaccagtatggcagtccct
caataactgaaaataggtctatcatatgattcagctctattactctagta
tatacccaaaggaatgtagacacatctcacaaagatgcttaccacattca
gtttgctgtgaatataattcagtgcccagaaataagaaaacccaactaga
tgactatcacagaagacttagaaaaagaaattagatatgcaatgcataca
attgaaattgtcagttgcaaaatgagtattaccttatgttaggaacaatc
acactgttgagaagagatactagtgacgatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92963273_92964408
seq2: B6Ng01-330M05.b_48_1182

seq1  GAATTCTCTGAGCTTTCCCTATTAATTTATGCATTAAGACATATTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGCTTTCCCTATTAATTTATGCATTAAGACATATTTGAAC  50

seq1  AGCTGCTGTGCATCAAACAGTGTGCTGGAGGCCAAGGTTACAAACTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGCATCAAACAGTGTGCTGGAGGCCAAGGTTACAAACTTAAA  100

seq1  TGTCTAGTGTATGAAGAAGAGAATGAGACAGAGCCATAGATAGGCGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTGTATGAAGAAGAGAATGAGACAGAGCCATAGATAGGCGAGCA  150

seq1  TGTTTATGTGTGCAGAGAGAATGAGCCTAGAAGAAAACATGATTCGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGTGCAGAGAGAATGAGCCTAGAAGAAAACATGATTCGACTT  200

seq1  GGGATTTGAATGATGGAGAACTAGACACGTATAGTTCTATACCAGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAATGATGGAGAACTAGACACGTATAGTTCTATACCAGAACAC  250

seq1  GTATCCCCAGGTTTGAAAGATGAGAAAAAGAGTTAGCAGAGTCAACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCCAGGTTTGAAAGATGAGAAAAAGAGTTAGCAGAGTCAACAAAG  300

seq1  TTGGCACCAGAGAAGCTATCATAAATGTTAGAAATTAATGCTAGAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACCAGAGAAGCTATCATAAATGTTAGAAATTAATGCTAGAGTATT  350

seq1  TGTGCCTGCCTTCATATTCTCACCCTGTATTATTCATACAAAGGGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCCTTCATATTCTCACCCTGTATTATTCATACAAAGGGAGACA  400

seq1  AGTATGGGTTCGAAATGCTCTCAATAGTTTCTAATGGTTGGTCTCCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGGTTCGAAATGCTCTCAATAGTTTCTAATGGTTGGTCTCCATGT  450

seq1  CCATTGTTCTGTATCACAGTGGACTGGCTGTGAATCATCAGGGTTACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCTGTATCACAGTGGACTGGCTGTGAATCATCAGGGTTACGTT  500

seq1  TTCCTGTATACACTAATCATGTTACTCAGGAACTGTCTAGTCTTAGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATACACTAATCATGTTACTCAGGAACTGTCTAGTCTTAGGGGT  550

seq1  TGTCCCAATTCTACACTGTACAATCACTGAGGTCACTGTTTTAGACTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAATTCTACACTGTACAATCACTGAGGTCACTGTTTTAGACTCAG  600

seq1  ACTTTGATGCCTCACTTTCCTCATCACCCTTATTAAGGTGCTATGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATGCCTCACTTTCCTCATCACCCTTATTAAGGTGCTATGTTAAA  650

seq1  TTTTTTTCTTTACAATTTTTTTCTAAGTTAAATATTTTTGGGGTCACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTACAATTTTTTTCTAAGTTAAATATTTTTGGGGTCACAAT  700

seq1  ATTCTACACACAAGTGAATGCAAGTTAATGGTGCTAATGGAGAAATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACACACAAGTGAATGCAAGTTAATGGTGCTAATGGAGAAATGGCT  750

seq1  TTTGTTTTGAAAATTGAGTATGTGTGAATTTTACAGTGAGAAGACATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAAAATTGAGTATGTGTGAATTTTACAGTGAGAAGACATTCT  800

seq1  CCACCCATATGAAAGAGTTTTAATTTCTTCTTGTTGTATTATGTCATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATATGAAAGAGTTTTAATTTCTTCTTGTTGTATTATGTCATTCA  850

seq1  TATAATACTCTTTGCTTCTGGGTTAAAAAAATTAGAGCAAAATCAAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACTCTTTGCTTCTGGGTTAAAAAAATTAGAGCAAAATCAAAATG  900

seq1  TTATCCCAAATGTTACTGTCAAAGAAGGAGAGATTAAAAACATTCCTAAC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTATCCCAAATGTTACTGTCAAAGAAGGAGAGATT-AAAACATTCCTAAC  949

seq1  ATGTTCACGTTCCACAGTGATCAGCTTATATTGATCATCAATAGCATTGA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTTCACGTTCCACAGTGATCAGCTTATATTGATCATC-ATAGCATTGA  998

seq1  CTTGAAATGATGTATACTCATGTTACAGGACTGAAATATCTGTAAATAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATGATGTATACTCATGTTACAGGACTGAAATATCTGTAAATAAA  1048

seq1  ATTGGAAATGTTAT-ACATTATATA-TGTATAACA-TAT-ACATCAGAAA  1096
      |||||||||||||| |||||||||| | ||||||| ||| ||||||||||
seq2  ATTGGAAATGTTATAACATTATATATTTTATAACATTATAACATCAGAAA  1098

seq1  GTAATGCAATATAATTCTAATAATAATGCATACTAGTGAT  1136
      || ||||||||| |||||||||||||||||||||| ||||
seq2  GT-ATGCAATAT-ATTCTAATAATAATGCATACTA-TGAT  1135


| Home | SequenceCutter | Blast | Download |