BAC Information

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BAC

Clone NameB6Ng01-330O03
Chromosome4 (Build37)
Map Location 145,539,992 - 145,541,247
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330O03.bB6Ng01-330O03.g
ACCGA117406GA117407
length1,1931,233
definitionB6Ng01-330O03.b B6Ng01-330O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgatgaatattaagatgaaatttgtgggtaaagcatttgtca
cattcactacatttataaattttctcttctgcatgaattccctgatggat
actaagatcgatctgatgggtaaagcatttgtcacttttactacttctgt
aatgtttcttttcatgataaattctctgctgactttgaagtttgtctctc
tgggtaagatatttgtcaaatttactacatttgtaagggttcactccagt
attatttcgtttcaccatgactttatgtttagaaataaaagccttctcag
attctgcatttccgttgtgttttttcttctgcatgtggattccctgattg
agactaatggtagaaaacaaagttaaactgtttacagagtcattgtattt
gcaaacttctttagtgttcctgggcttaagtcttttttggttcgaaaatt
gaagagcatcagaggtatgattagttttgtaaggtgtacattggggggct
tcaagtatcacattgctaagtttgtcccatttagaagacttctcttgaat
attcatgtgttcatggacaatgtactggctgtcttgatccaagaccttct
catactttccacatatgcaatgattttctgaaaaaaagtagggaggggca
attagaggtgacatgaattacttatataaggagtaagtgattcaataatc
agtgatctcatggattcgtactctcaagagaggtttttctcctttttttg
aatcattacatgtatcctcaaaagaacttcaaatatggtctatatcaaat
gattggaaatgatagtaacctgctaaatttcagtttcaaattggacatca
tacccacctcaaatataataacccagaattgctcccgtgttaaggaaaaa
gagggaaaaaaatggaaaagagctgaagtaagccatccagagactggacc
aaagagatgcagatccctgcagcaccattagactgagcagggggctacat
gaagagttaagggaaggactgaagaagctgaaggctttgcacttttgtag
agaacaacatattcaaacaacagaacatacaaagcttcgaaggaaaatca
ccaaccaagtgtacaaatgatgttacaaatgctccagcttatatatagaa
aggatggcccttatatgcattcacgaggcaattccttggtact
gaattcatacaggagagaaaccttacaaatgcagtgagtgtgacaaatgc
tttacccaaccatcccatcttagtattcatcgtagaattcattcaggaga
gaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaattca
ctctgagaaagcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgcgacaaatgctttactgacaaattcactctgagaaagcatca
gagaattcatataggagagaaaccttacaaatgtaatgaatgtgacaaat
gctttactgacaaaggcagtctgagagttcatcagagaattcatacagga
gagaaaccttacaaatgcagtgagtgtgacaaatgctttacccaaccatc
ccatcttagtattcatcgtagaattcattcaggagagaaaccttacaaat
gtagtgaatgcgacaaatgctttactgacaaaggcagtctgagagttcat
cagagaattcatataggagagaaaccgtacaaatgcagtgagtgtgacaa
atgctttacccaaccatcccatcttagtattcatcgtagaattcattcag
gagagaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaa
ggcagtctgagagttcatcagagaattcatacaggagagaaaccgtacca
atgcagtgagtgtgacaaatgctttactgacaaaagcagtcttagagttc
atcatagaattcatgcaggagagaaaccttacaaatgtagtgaatgcgac
aaatgctttactgacaaaggctatctgagagttcatcatagaattcatgc
aggagagaaatcttacaaatgtagtgaatgtgacaaatgctttactcaca
aaggctctctgagagttcatcatagaattcatgcaggagagaaaccttat
aaatgcagtgaatgtgacaaatgctttaccggaaaatcacatcttagtat
catcagagattcatacaggagagaactgtacaaatgcagtgaatgtgaca
aatgctttacccacatgcccatcttaggtattcatcagaaaaattcattc
aagaagagagaaccttacaaatgcaatgatgcgacaaatgctttactgac
caacacagtctggaagcatcggataattcatacaggaggaagaaaccctt
aacaatgttattggagatggtggtactcaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145539992_145541247
seq2: B6Ng01-330O03.b_4_1239

seq1  CATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCT  50
                                                 |||||||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTCT  50

seq1  CTGATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCAC  100

seq1  TACATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGA  150

seq1  TCGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAATGTTT  200

seq1  CTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAA  250

seq1  GATATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTT  300

seq1  CGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGC  350

seq1  ATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAA  400

seq1  CGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTGCAAACT  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTGCAAACT  450

seq1  TCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAATTGAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAATTGAAGAGC  500

seq1  ATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGGGGGGCTTCAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGGGGGGCTTCAAGTA  550

seq1  TCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTCTTGAATATTCATG  600

seq1  TGTTCATGGACAATGTACTGGCTGTCTTGATCCAAGACCTTCTCATACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGACAATGTACTGGCTGTCTTGATCCAAGACCTTCTCATACTT  650

seq1  TCCACATATGCAATGATTTTCTGAAAAAAAGTAGGGAGGGGCAATTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATGCAATGATTTTCTGAAAAAAAGTAGGGAGGGGCAATTAGAG  700

seq1  GTGACATGAATTACTTATATAAGGAGTAAGTGATTCAATAATCAGTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATGAATTACTTATATAAGGAGTAAGTGATTCAATAATCAGTGATC  750

seq1  TCATGGATTCGTACTCTCAAGAGAGGTTTTTCTCCTTTTTTTGAATCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTCGTACTCTCAAGAGAGGTTTTTCTCCTTTTTTTGAATCATT  800

seq1  ACATGTATCCTCAAAAGAACTTCAAATATGGTCTATATCAAATGATTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATCCTCAAAAGAACTTCAAATATGGTCTATATCAAATGATTGGA  850

seq1  AATGATAGTAACCTGCTAAATTTCAGTTTCAAATTGGACATCATACCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGTAACCTGCTAAATTTCAGTTTCAAATTGGACATCATACCCAC  900

seq1  CTCAAATATAATAACCCAGAATTGCTCCCGTGTTAAGGAAAAAGAGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATAATAACCCAGAATTGCTCCCGTGTTAAGGAAAAAGAGGGAA  950

seq1  AAAAATGGAAAAGAGGCTGAAGGTAAGGCCATCCAGAGACTGGACCAAAG  1000
      |||||||||||||| |||||| |||| |||||||||||||||||||||||
seq2  AAAAATGGAAAAGA-GCTGAA-GTAA-GCCATCCAGAGACTGGACCAAAG  997

seq1  AGATGCAGATCCCTGCAGCCAACCATTAGACTGAGCAGGGGGGCTACATG  1050
      |||||||||||||||||||  |||||||||||||||| ||||||||||||
seq2  AGATGCAGATCCCTGCAGC--ACCATTAGACTGAGCA-GGGGGCTACATG  1044

seq1  AAGGAGTTAAGGGAAGGACTGAAGAAGCTGAAGGGCTTTGCAACTGTGTA  1100
      || ||||||||||||||||||||||||||||| |||||||||  | ||||
seq2  AA-GAGTTAAGGGAAGGACTGAAGAAGCTGAA-GGCTTTGCACTTTTGTA  1092

seq1  GGAGGAACAACAATATCAAACAACAAGACCATACAAAGCTTCGAAGGGGA  1150
      |   ||||||||   ||||||||| ||| ||||||||||||||||  |||
seq2  G--AGAACAACATATTCAAACAAC-AGAACATACAAAGCTTCGAA--GGA  1137

seq1  AAATCACCAACCAAAGTGTACACATGGATG-TACAAATGGCTCCAGCTTT  1199
      |||||||||||| ||||||||| || |||| ||||||| |||||||| ||
seq2  AAATCACCAACC-AAGTGTACAAAT-GATGTTACAAAT-GCTCCAGC-TT  1183

seq1  ATATATAGAAGGGGATTG-CCTTATATGGCATCAACAGGAGGGGAGTCCC  1248
      ||||||||||  |||| | |||||||| ||||   || || || | | ||
seq2  ATATATAGAA-AGGATGGCCCTTATAT-GCAT--TCACGA-GGCAATTCC  1228

seq1  TTGGTACT  1256
      ||||||||
seq2  TTGGTACT  1236