BAC Information

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BAC

Clone NameB6Ng01-331J21
Chromosome6 (Build37)4 (Build37)
Map Location 146,853,742 - 146,854,29579,950,935 - 79,951,868
singlet/doubletsingletsinglet
Overlap genePpfibp1
Upstream geneSspn, Itpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik
Downstream gene1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J21.bB6Ng01-331J21.g
ACCGA117935GA117936
length6581,083
definitionB6Ng01-331J21.b B6Ng01-331J21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,853,742 - 146,854,295)(79,950,935 - 79,951,868)
sequence
gaattcctgatcttgctatcatgtctttcatcttcgggtgtgggattgtg
ccggctgctttcgctactgaatacagcattatcatgtgggcttgcctaag
actttgccaatatgctgtatattctgcataaattaataaagacattcatt
gccaatcccctttatgctctatttatttaattttagacctgaagccatga
ttgtgtttaattgaaaaatttttttattattattttatgtgtatgggtgt
tttgcctgcatacatgtctgtatatcacatgtattctgatgtccaaaaag
gccagaagagggcattggatctcctgaaacatatttattgatagttgtga
gctgttatgtatgtgctgagaagtgaacctgtgttctctaaaaaagtcat
cttcaaccttgtggttacacttcagcagtgaattaactcagtatttgaat
agaaagtgagttataattacaggaaagagcttctgagctggtgactgaca
gccttggtttggatcttggagcttggatctattgtgtggttttctcatct
tctttcctgcatcttggtaggaatggagaggatatgggaaattttttcca
tgtaatatgaatatattcattttttaaaaggatcagatggtgttagggca
tgtaattc
gaattccggaccccgttcggagcccgtaggcaatcgccctattcttacgt
agagtctccatgatcgcttcactgccacggctatggatgcttgaaaatca
aaagaaaattttgttggctggaaattcttacaggactacctgctgccccc
ttataaggtcaatggacaatttctgttcttcccggaagtgcagatttact
gaaatttggcctctcccactgacataataaaatctggatttataaaacct
ctgcttggattgacagattgtgcctttaaccttgaggactgttaaaacaa
tccaggactacatttaccagaaagatgtcaatgacaggggacccctgcta
tttcccctaagggggagacttgggaggcaaaacaatgaacgcaggaatga
ttgagagaaacatcacacctttggaatcctaatactgatggctaagaaag
acatccctctggtctaagataatgctaaggtggtttgatttctgcactca
gagcaaggatttaatggaatagaggaggtatttgagagaacaataaaagg
catagaaacacaaggttttctgtaaagttttatttgaacatctggtgaca
tgacttactaaaacagttcctgactagcaagaaaaagatcctgggtccaa
tctctaatactgaaaattaaaataccaagtctcaagtcaaaatctccttt
gaaaacactgaattcaacatatatatagtagtttcctaaacagaaacaaa
acctgagctctgggttcaaagataaaggtgtcctggatcaattagaaata
cattttgtagcaatgaatttttttatttattgatgcttgggaagcatgtt
tgtactttttcagttcagaaaagctccaaactcaggatcttcatgcctca
gcctcccaagggctgagaatacaaaagtgttatctcaccaagcatcacaa
tgatatttatacaattatatatctgatataccttaaatcaaggacttatc
ctatttaggggttcattgctgtaaaagacatcagaccaagacaacttaag
cgaatattttatttggagcctagctaaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_146853742_146854295
seq2: B6Ng01-331J21.b_148_700

seq1  GCCAATATGCTTTTTATTCTGCAGAGTTAAAGAAAGACATTCATTGGGAA  50
      ||||||||||| | ||||||||| |  | || ||||||||||||||  ||
seq2  GCCAATATGCTGTATATTCTGCATAAATTAATAAAGACATTCATTGCCAA  50

seq1  TCCCCTTTATGCTCTATTTATTTAATTTTAGTCCCTGAAGCCATGATTGT  100
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  TCCCCTTTATGCTCTATTTATTTAATTTTAG-ACCTGAAGCCATGATTGT  99

seq1  GTTTAATTAAAAAATTTTTTTATTATTATTTTATGTGTATGGGTGTTTTG  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTGAAAAATTTTTTTATTATTATTTTATGTGTATGGGTGTTTTG  149

seq1  CCTGCATACATGTCTGTATATCACATGTATTCTGATGTCCAAAAAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATACATGTCTGTATATCACATGTATTCTGATGTCCAAAAAGGCCA  199

seq1  GAAGAGGGCATTGGATCTCCTGAAACATAGTTATTGATAGTTGTGAGCTG  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAGAGGGCATTGGATCTCCTGAAACATATTTATTGATAGTTGTGAGCTG  249

seq1  TTATGTATGTGCTGAGAAGTGAACCTGTGTTCTCTAAAAGAGTCATCTTC  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATGTATGTGCTGAGAAGTGAACCTGTGTTCTCTAAAAAAGTCATCTTC  299

seq1  AGCCTTGTGGTTACACTTCAGCAGTGAATTAACTCAGTATTTGAATAGAA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTGGTTACACTTCAGCAGTGAATTAACTCAGTATTTGAATAGAA  349

seq1  AGTGAGTTATAATTACAGGAAAGAGCTTCTGAGCTGGTGACTGACAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTATAATTACAGGAAAGAGCTTCTGAGCTGGTGACTGACAGCCT  399

seq1  TGGTTTGGATCTTGGAGCTTGGATCTATTGTGTGGTTTTCTCATCTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGATCTTGGAGCTTGGATCTATTGTGTGGTTTTCTCATCTTCTT  449

seq1  TCCTGCATCTTGGTAGGAATGGAGAGGATATGGGAAATTTTCCTCATGTA  500
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TCCTGCATCTTGGTAGGAATGGAGAGGATATGGGAAATTTTTTCCATGTA  499

seq1  ATACATATAAGTTCATAAATTAGAATTATAATATAAT-TTAGGGCATGTA  549
      |||   |||  |||||   ||| ||  || | ||  | ||||||||||||
seq2  ATATGAATATATTCATTTTTTAAAAGGATCAGATGGTGTTAGGGCATGTA  549

seq1  CATTC  554
       ||||
seq2  -ATTC  553

seq1: chr4_79950935_79951868
seq2: B6Ng01-331J21.g_224_1149 (reverse)

seq1  AAATATTTTAGCTA-GCTCCAAAT-AAATATTTGCCTTTAAGTTGTCTTG  48
      ||||| |||||||| ||||||||| ||||||| ||  |||||||||||||
seq2  AAATA-TTTAGCTAGGCTCCAAATAAAATATTCGC--TTAAGTTGTCTTG  47

seq1  GTCTTGATGTCTGTTTACAGCAATGGAACCCCTAATTAAGATAAGTCCTT  98
      ||| |||||||| ||||||||||| |||||||||| || ||||||||| |
seq2  GTC-TGATGTCT-TTTACAGCAAT-GAACCCCTAAATAGGATAAGTCC-T  93

seq1  TGATTTAAGGTATATTCAGATATATAATTGTATAAATATCATTGTGATGC  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGATTTAAGGTATA-TCAGATATATAATTGTATAAATATCATTGTGATGC  142

seq1  TTGGTGAGATAACACTTTTGTATTCTCAGCCCTTGGGAGGCTGAGGCATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGATAACACTTTTGTATTCTCAGCCCTTGGGAGGCTGAGGCATG  192

seq1  AAGATCCTGAGTTTGGAGCTTTTCTGAACTG-AAAAGTACAAACATGCTT  247
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGATCCTGAGTTTGGAGCTTTTCTGAACTGAAAAAGTACAAACATGCTT  242

seq1  CCCAAGCATCAATAAATAAAAAAATTCATTGCTACAAAATGTATTTCTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCATCAATAAATAAAAAAATTCATTGCTACAAAATGTATTTCTAA  292

seq1  TTGATCCAGGACACCTTTATCTTTGAACCCAGAGCTCAGGTTTTGTTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCAGGACACCTTTATCTTTGAACCCAGAGCTCAGGTTTTGTTTCT  342

seq1  GTTTAGGAAACTACTATATATATGTTGAATTCAGTGTTTTCAAAGGAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGAAACTACTATATATATGTTGAATTCAGTGTTTTCAAAGGAGAT  392

seq1  TTTGACTTGAGACTTGGTATTTTAATTTTCAGTATTAGAGATTGGACCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTGAGACTTGGTATTTTAATTTTCAGTATTAGAGATTGGACCCA  442

seq1  GGATCTTTTTCTTGCTAGTCAGGAACTGTTTTAGTAAGTCATGTCACCAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTTTCTTGCTAGTCAGGAACTGTTTTAGTAAGTCATGTCACCAG  492

seq1  ATGTTCAAATAAAACTTTACAGAAAACCTTGTGTTTCTATGCCTTTTATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAATAAAACTTTACAGAAAACCTTGTGTTTCTATGCCTTTTATT  542

seq1  GTTCTCTCAAATACCTCCTCTATTCCATTAAATCCTTGCTCTGAGTGCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCAAATACCTCCTCTATTCCATTAAATCCTTGCTCTGAGTGCAG  592

seq1  AAATCAAACCACCTTAGCATTATCTTAGACCAGAGGGATGTCTTTCTTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACCACCTTAGCATTATCTTAGACCAGAGGGATGTCTTTCTTAG  642

seq1  CCATCAGTATTAGGATTCCAAAGGTGTGATGTTTCTCTCAATCATTCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTATTAGGATTCCAAAGGTGTGATGTTTCTCTCAATCATTCCTG  692

seq1  CGTTCATTGTTTTGCCTTTCTAAGTCCTAAAACTAGGGGAAATAGCAGGG  747
      |||||||||||||||| | | |||||       |||||||||||||||||
seq2  CGTTCATTGTTTTGCC-TCCCAAGTCTCCCCCTTAGGGGAAATAGCAGGG  741

seq1  TAACTGCTGTCATTGACATCTTTCTCATAAATGTCTTCCTGGATTGTTTT  797
         |  |||||||||||||||||||  |||||||  ||||||||||||||
seq2  -GTCCCCTGTCATTGACATCTTTCTGGTAAATGTAGTCCTGGATTGTTTT  790

seq1  AACAGTTATATAAGGTTAAAGGCACAATCTGTCAATCTAAGCACTGGTTT  847
      ||||||  |  |||||||||||||||||||||||||| |||||  |||||
seq2  AACAGTCCT-CAAGGTTAAAGGCACAATCTGTCAATCCAAGCAGAGGTTT  839

seq1  TATAAATCTTGCTTTTATTATTTCAGTTACTGAAGACAAATTTCTGTAAA  897
      ||||||||  | ||||||||| |||||    || | |||||||| |||||
seq2  TATAAATCCAGATTTTATTATGTCAGTGGGAGAGGCCAAATTTCAGTAAA  889

seq1  TCTACATTACTGGCTAAAATAGAAATTGTCCATTGAC  934
      ||| || | | ||  | || |||||||||||||||||
seq2  TCTGCACTTCCGGGAAGAACAGAAATTGTCCATTGAC  926