BAC Information

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BAC

Clone NameB6Ng01-331M16
Chromosome4 (Build37)
Map Location 78,426,035 - 78,600,926
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M16.bB6Ng01-331M16.g
ACCGA118068GA118069
length1,123991
definitionB6Ng01-331M16.b B6Ng01-331M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,426,035 - 78,427,146)(78,599,930 - 78,600,926)
sequence
gaattcaacaaaatagttaaagaggattcggtgctcaagtgcagctttct
gaaagcaagaacataaagctgacatagatgtagagaccattgatgcaggc
aagtgtttaggtatgatgttaaggaatctgccaaagtgtttctctgagaa
gtgatcagatctcattcaatcagcaagagagggtgcatcaaaacttcaca
ctcatctcagcaggccgaggaggaccctaatctcgtagagaccttgactg
agacaaatctataactttgacacagaaaataatttcaggactagctagta
tgaagaaatttgagatttggtggaagttgttcaaaaggcactcaggaaga
aaataaaagcacacccaagaatacagctacagatgtcgccaagagagtgc
tgtaaaaaattatattcttgtttaggggcgtgggctacttatgggaagtc
cagagttagaataatggtttaactacacacacacacacacacacacacac
acacacacacacacacacacacatacacacggtatgtcttcaggattcat
tgtatgagtagctcaaagttatatcacaaaagacatttattttattttct
ctctgattaaaaaatgttatagattattctggggatttgttgcttggaat
tataatctgatatagtgaaaccagaagatattggggttgtataatgggtt
gtggacatatccttttctataagtggtgtctccagtgagatttctagaaa
gtcaaaattgatatctagaaagtcaaaataaatatttagaaagtccaaaa
tggcaaaattgaaacaccctactcagctactagttacatttaaatcattt
gctctcctgttaagagggttcatgctgattatggggtaagaataactcca
ccctcatgtcctcacagattcccctttcaatcctgattcatttcccaggc
agatgtgggttcaaggcacagagctcaccaaagatggagcctaggttctg
aaccaaatgaaaagtcaaagtgagtgatcttgcctgagcctgaagctctg
atgagaaagaatggtgtggtgtttgtcttgtattctccatgaatataggc
caacagttagtctgaatgacagg

gaattctacattagcaggataaaagaacttaccaggaagagttaggcaag
cacttgaaaagcaaaatctttttttctatcatttccttttcttttgctat
cgttagaatgtgtgacctagattttggctgggtctttccacctcaaatga
taaagtgaaaaaaagtcctccaagggagtgccaagataattgagttttag
ttgattccaaatagagtcacactggcaaccaagagtatggattttatagc
tgttcactgtgccgttacttgcttttccagaatcatggtatcatgtttgg
gttttgtaaagagacactaggaaatattagattaagaaatattacctatg
aatttataggccaaatacatattatctttttaaaaaattaattcaaaata
gagaaaatgaagttgggaggttcaacctcaaagtattagtgggtaagcca
tcctgtatataatagtagtacattctataagtctagccattcaaatatta
tcctaataaattctattgccatgtatttttcattagttttgcaagcaaat
ggatggagctagaaagtatcattctgagtgagttaactccaacccagatg
cataggcatggtatatactcaccaataataggatattagccaaaaatccc
cagaattcccaggtacaggattcccaggatatagtcacagagaagaagaa
ggataagaagcagaagatcctaagtgaggatgcctcattcccacttggga
gggagaagagagcaatcacaggagtggggagaaaaggagggacctggttg
caaaaggcaacaggggggagaagaggaaaacatgatcaggcatttggggg
gcgggagcacaagacttaaggcctgagagccagcagaagaatcaaaacag
gaaaccttggaaggtagaagtagggggcccctcttgatgtatcagaacta
ggagttaagagattctcagattcaatggccctacagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78426035_78427146
seq2: B6Ng01-331M16.b_50_1172

seq1  GAATTCAACAAAATAGTTAAAGAGGATTCGGTGCTCAAGTGCAGCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAAATAGTTAAAGAGGATTCGGTGCTCAAGTGCAGCTTTCT  50

seq1  GAAAGCAAGAACATAAAGCTGACATAGATGTAGAGACCATTGATGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAACATAAAGCTGACATAGATGTAGAGACCATTGATGCAGGC  100

seq1  AAGTGTTTAGGTATGATGTTAAGGAATCTGCCAAAGTGTTTCTCTGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTAGGTATGATGTTAAGGAATCTGCCAAAGTGTTTCTCTGAGAA  150

seq1  GTGATCAGATCTCATTCAATCAGCAAGAGAGGGTGCATCAAAACTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCAGATCTCATTCAATCAGCAAGAGAGGGTGCATCAAAACTTCACA  200

seq1  CTCATCTCAGCAGGCCGAGGAGGACCCTAATCTCGTAGAGACCTTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAGCAGGCCGAGGAGGACCCTAATCTCGTAGAGACCTTGACTG  250

seq1  AGACAAATCTATAACTTTGACACAGAAAATAATTTCAGGACTAGCTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATCTATAACTTTGACACAGAAAATAATTTCAGGACTAGCTAGTA  300

seq1  TGAAGAAATTTGAGATTTGGTGGAAGTTGTTCAAAAGGCACTCAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATTTGAGATTTGGTGGAAGTTGTTCAAAAGGCACTCAGGAAGA  350

seq1  AAATAAAAGCACACCCAAGAATACAGCTACAGATGTCGCCAAGAGAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGCACACCCAAGAATACAGCTACAGATGTCGCCAAGAGAGTGC  400

seq1  TGTAAAAAATTATATTCTTGTTTAGGGGCGTGGGCTACTTATGGGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAATTATATTCTTGTTTAGGGGCGTGGGCTACTTATGGGAAGTC  450

seq1  CAGAGTTAGAATAATGGTTTAACTACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTAGAATAATGGTTTAACTACACACACACACACACACACACACAC  500

seq1  ACACACACACACACACACACACATACACACGGTATGTCTTCAGGATTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATACACACGGTATGTCTTCAGGATTCAT  550

seq1  TGTATGAGTAGCTCAAAGTTATATCACAAAAGACATTTATTTTATTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTAGCTCAAAGTTATATCACAAAAGACATTTATTTTATTTTCT  600

seq1  CTCTGATTAAAAAATGTTATAGATTATTCTGGGGATTTGTTGCTTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTAAAAAATGTTATAGATTATTCTGGGGATTTGTTGCTTGGAAT  650

seq1  TATAATCTGATATAGTGAAACCAGAAGATATTGGGGTTGTATAATGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTGATATAGTGAAACCAGAAGATATTGGGGTTGTATAATGGGTT  700

seq1  GTGGACATATCCTTTTCTATAAGTGGTGTCTCCAGTGAGATTTCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATATCCTTTTCTATAAGTGGTGTCTCCAGTGAGATTTCTAGAAA  750

seq1  GTCAAAATTGATATCTAGAAAGTCAAAATAAATATTTAGAAAGTCCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTGATATCTAGAAAGTCAAAATAAATATTTAGAAAGTCCAAAA  800

seq1  TGGCAAAATTGAAACACCCTACTCAGCTACTAGTTACATTTAAATCA-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCAAAATTGAAACACCCTACTCAGCTACTAGTTACATTTAAATCATTT  850

seq1  GCTCTCCTGTTAAGAGGGTTCATGCTGATTATGGGGTAAGAATAACTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTGTTAAGAGGGTTCATGCTGATTATGGGGTAAGAATAACTCCA  900

seq1  CCCTCATGTCCTCACAGATTCCCCTTTCAATCCTGATTCATTTCCAAGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCTCATGTCCTCACAGATTCCCCTTTCAATCCTGATTCATTTCCCAGGC  950

seq1  AGATGT-GGTTCAAGGCACAGAGCTCACCAAAGATGGAG-CTA-GTTCTG  996
      |||||| |||||||||||||||||||||||||||||||| ||| ||||||
seq2  AGATGTGGGTTCAAGGCACAGAGCTCACCAAAGATGGAGCCTAGGTTCTG  1000

seq1  AA-CAAATGAAAAGTC-AAGTGAGTGACCTTG-CTGAG-CTGAAGCTCTG  1042
      || ||||||||||||| |||||||||| |||| ||||| |||||||||||
seq2  AACCAAATGAAAAGTCAAAGTGAGTGATCTTGCCTGAGCCTGAAGCTCTG  1050

seq1  GTGAGAAAGAAT-GTGTGTGTTTTGTCTTTGTAATTCT-CATG-ATATAG  1089
       ||||||||||| |||||   |||||| |||| ||||| |||| ||||||
seq2  ATGAGAAAGAATGGTGTGGTGTTTGTC-TTGT-ATTCTCCATGAATATAG  1098

seq1  G-CACCAGTTAGTCTG-ATGACAGG  1112
      | || ||||||||||| ||||||||
seq2  GCCAACAGTTAGTCTGAATGACAGG  1123


seq1: chr4_78599930_78600926
seq2: B6Ng01-331M16.g_70_1060 (reverse)

seq1  CCCCACTGTAGGCCATTTGAATCCTGAGAATCTCTTAACTCCTAAGTTTC  50
      |||||||||||| |  |||||| |||||||||||||||||||||   |||
seq2  CCCCACTGTAGGGCCATTGAAT-CTGAGAATCTCTTAACTCCTA--GTTC  47

seq1  TGATACATTCAAGAGGGGCCCCCTACCTTCTACCTTCCAAGGTTTCCTGT  100
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATACA-TCAAGAGGGGCCCCCTA-CTTCTACCTTCCAAGGTTTCCTGT  95

seq1  TTTGATTCTTTCTGCTGGCTCTCAGGCCTTAAGTCTTGTGCTCCCGCCCC  150
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTC-TTCTGCTGGCTCTCAGGCCTTAAGTCTTGTGCTCCCGCCCC  144

seq1  CCAAATGCCTGATCATGTTTTCCTCTTCTCCCCCCTGTTGCCTTTTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCCTGATCATGTTTTCCTCTTCTCCCCCCTGTTGCCTTTTGCAA  194

seq1  CCAGGTCCCTCCTTTTCTCCCCACTCCTGTGATTGCTCTCTTCTCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCCTCCTTTTCTCCCCACTCCTGTGATTGCTCTCTTCTCCCTCC  244

seq1  CAAGTGGGAATGAGGCATCCTCACTTAGGATCTTCTGCTTCTTATCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGAATGAGGCATCCTCACTTAGGATCTTCTGCTTCTTATCCTTC  294

seq1  TTCTTCTCTGTGACTATATCCTGGGAATCCTGTACCTGGGAATTCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGTGACTATATCCTGGGAATCCTGTACCTGGGAATTCTGGGG  344

seq1  ATTTTTGGCTAATATCCTATTATTGGTGAGTATATACCATGCCTATGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGCTAATATCCTATTATTGGTGAGTATATACCATGCCTATGCAT  394

seq1  CTGGGTTGGAGTTAACTCACTCAGAATGATACTTTCTAGCTCCATCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGGAGTTAACTCACTCAGAATGATACTTTCTAGCTCCATCCATT  444

seq1  TGCTTGCAAAACTAATGAAAAATACATGGCAATAGAATTTATTAGGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAAAACTAATGAAAAATACATGGCAATAGAATTTATTAGGATAA  494

seq1  TATTTGAATGGCTAGACTTATAGAATGTACTACTATTATATACAGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATGGCTAGACTTATAGAATGTACTACTATTATATACAGGATGG  544

seq1  CTTACCCACTAATACTTTGAGGTTGAACCTCCCAACTTCATTTTCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCACTAATACTTTGAGGTTGAACCTCCCAACTTCATTTTCTCTAT  594

seq1  TTTGAATTAATTTTTTAAAAAGATAATATGTATTTGGCCTATAAATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTAATTTTTTAAAAAGATAATATGTATTTGGCCTATAAATTCAT  644

seq1  AGGTAATATTTCTTAATCTAATATTTCCTAGTGTCTCTTTACAAAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATTTCTTAATCTAATATTTCCTAGTGTCTCTTTACAAAACCCA  694

seq1  AACATGATACCATGATTCTGGAAAAGCAAGTAACGGCACAGTGAACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATACCATGATTCTGGAAAAGCAAGTAACGGCACAGTGAACAGCT  744

seq1  ATAAAATCCATACTCTTGGTTGCCAGTGTGACTCTATTTGGAATCAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCATACTCTTGGTTGCCAGTGTGACTCTATTTGGAATCAACTA  794

seq1  AAACTCAATTATCTTGGCACTCCCTTGGAGGACTTTTTTTCACTTTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATTATCTTGGCACTCCCTTGGAGGACTTTTTTTCACTTTATCA  844

seq1  TTTGAGGTGGAAAGACCCAGCCAAAATCTAGGTCACACATTCTAACGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTGGAAAGACCCAGCCAAAATCTAGGTCACACATTCTAACGATA  894

seq1  GCAAAAGAAAAGGAAATGATAGAAAAAAAGATTTTGCTTTTCAAGTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAAAAGGAAATGATAGAAAAAAAGATTTTGCTTTTCAAGTGCTT  944

seq1  GCCTAACTCTTCCTGGTAAGTTCTTTTATCCTGCTAATGTAGAATTC  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTCTTCCTGGTAAGTTCTTTTATCCTGCTAATGTAGAATTC  991


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